TCONS_00017144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017144
Unique NameTCONS_00017144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017144 ID=TCONS_00017144|Name=TCONS_00017144|organism=Clytia hemisphaerica|type=transcript|length=3152bp
tatagaTGAATCACTAATTGATATATAGATATAAACTGATAATTGTATAA
CAGAAATGGAAATTCAACACAAGCTTATGTTGCTGGGAGTATTTCTATTA
TGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACCCNA
TTATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACC
CTCAGCGTGTGGTTTAAACCaatattttcaattctccaGTTTAACATGTG
TTGCATGTGGTGAGTTTCAACAGAGAAGTCCAGATTTGGTGTCTTGTACA
TGTCAACCAGGTGCTAAATTAGTATCTTATTTTGGTGGGCCAGTGAAAAC
ATGTCAACCTTGTGCACCCCCTAAGGTAGTAACAAATGACGGTTGGGGAT
GTTCTGATTGTCCAACAGGGAGACCATACGACTCTACATTAAAGAAATGT
GCATCCTGCGTATCACCTTTACAACACCAAACCGATCGCTCAGAAACAGG
TTTTTTGTTGACAAGAAAAACTTGCTTACAATGTCAATCTGATACATCGC
CTTCTACAAATGAGGGTGTTTGTAGGAGATGTCATTCACAAGTATTGAAA
GTGACTGGTGGTGCCTCTTGTGCATGTCCCACTGATGATGTATTTACTGG
TGGAGTTTGTTTATCAAGGACAAGTGGGATACCAGCAGACGATACTACAT
CATACATCATACGACACAAAAACAATTTCATGTCTGCTTATTTCAAAGAA
TACTTTCGTGCTGCCAAAGTACTGTGTCAGGAAAATCAAAACTTCACTGC
ATGTCAACAGCTTGGTAACCTGTGTGTAATGCTCATGTACAACGAAGATA
ATTCAAACCGCGCGGCCACTGATGCGTGCAAAGAATATCTGATTCTAGTC
AGAGCATCAACAGACTACGTGGATGGAATTACAGATTGGCCTCGAAATAT
GCCTTGGTTGTACTACAAAGACGACGGCAGTACTGTTGTTTTGGAGAAAG
AAAACGTCCCACAAGCTTTCACGCGTGGTGAGATTCTCAAATTCAATCTT
GTTTCTTATCGTGTAAACGGGTCCTTCTTAGACATCCGTAAAGACCCATC
CATATTACAATTATGTCCTCAACCAATGTCAATGACCGAGAAAGCATTTA
CGATGACAAACCAATACTCTATCAAATGTCAAATGTCAATTGCTAAACTG
TTGCAACAAGACACTGTCTTCTTTGATATGTTTTTACGTGTCGATAATGA
TAAATCGCAATATCCCGTCCCTGTACTTGTTGACAACGTACAAACTCGTG
GTACGTTCGTTAATCGGGACACGGAACGTAAAAACTGGAAATTAAACCGC
CGTTTCTTTTTAATCGATAAATATTCCGGGCTTGGAATAATTGACGATTC
TGTCCCTTCCTTTATCCAATACGCATCAAGTATcgagttaaattttcaat
tgatcGATAATGGGAAATTTTATCCACCATTATTGAAAATCCACTATGAT
GTCCATGATGTTGATCCGGTTACCATGGAAACCGATTTGGtgaacattga
gtttaaagtgACGTATACGATGGATACAAGCCAACTGGATGAAAATATAA
AGATCACAGTGGGCGTGTTATCAGCATTAGGGGTGGTTTACGCCCTCGTT
AAAATCAGTAGCTGGCGTCGACGAGAAGGAATAGCAGTGTTAGACTGTAC
ATCATAGACAGTACGGTCATTACATACACGGACGTTCCGTACACGGCCGC
TCCGATACTAGTCTTTACGAACTTTACGAGCAGTTTCAACGTGAGGAGGA
CAACTTATGTGGGAAACGAGGTCTGGAACCGAATTCAGAACGACAGACTT
TCGAGATGGGAATAACGGTGCGCTTTAGGAATGAANCCTGGAACCGAATT
CAGAGCGACAGACTTTCGAGATGGGAATAACGGTGCGCTTTAGGAATGAA
TATTCGAAGATTTTACAACCGTTGTTATCAAGAGAAACACAAGGTGCTAG
ACGTGGTCAACAGAATATGTCGCGTCAAAACCCCAATTTACCAGGCAGTA
ATTTAACACCCGCGTTGGAGCGCAGTGTCAAAGCTTACAACCAAATGAAT
CGATATTTGTCCTCCTTCGTAGAGCATGCTATAAGAGAAAATGATTATTT
CGTCAAAGATAAATTGTTGTTGGAAAAACTGTTGAAGAATGAATTACAAC
CGCCTGAAGAGAAGAGTGTCTTCTACAACGATGATGGTCGTTCATTCACT
TCCATTCTTCTGTACGGTCAAGAATGGTCTTTGTTATTGTTCAATCTATT
GTTATTCCTCATCGTTGATTGGTTGTCAGGATGGAACGCTATTTTAGCAG
GTTTTATTGCTTACATGGCTGAAATTATTATCACATCAGTACGAGACTCT
TTTGGTAAGAAAAATTTAGCCGAAAAAACGATGGTGGATGAACGATTCtt
gatttaaaacaaaaactgcATTAGTGATTTACAAGTTTTAGCTGAAAGTT
CTGCTTTCTAAACTGTTAACCAAAGTTTGTTGGTTAAATATCGTTTACGC
TGGCTATAGATtctggatttttttaaataaaggggTCTCAAAAGCGTAAT
TCTACAATTAAGCTAACAAATTTAATTTGGGAAAAGTGTTGTgataatga
aatcaaaattcgAGAGATTGAGATTTACGATGTTGATGGAATCTATGAAA
CTAATACTACAATATGAGTAGTTCTTTTAAATGATGATTTATGGTACCTA
TAAACCCAGTGAAACACTAAATTGCTACATGATGATCAATCATCTTTCTA
ACTTATTACATTATTGTGTGTATAGctgtattgggctcttccagaaaaaa
accattcatggggggtggaggatatattgtccaggggtattgaaaaaaaa
ctgaaaaactgccatgtccatggggtgaatcagcgatgtccaggggtaaa
tatttgtgtccagggggtcaatttgatgcttgtccaggggtaaaacacgt
gtccagggggtaaaaaatcgaaatgtccaggggtagatcaaagacaaaat
aatatatcctccaccccccatgaacgaattttttctggaagagcccatta
ccCTTTTTGACAGCATTGTTCTAAATGGGTCTTATTTTTTGACggttttg
ag
Run BLAST on NCBI

protein sequence of TCONS_00017144-protein

>TCONS_00017144-protein ID=TCONS_00017144-protein|Name=TCONS_00017144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSAYFKEYFRAAKVLCQENQNFTACQQLGNLCVMLMYNEDNSNRAATDAC
KEYLILVRASTDYVDGITDWPRNMPWLYYKDDGSTVVLEKENVPQAFTRG
EILKFNLVSYRVNGSFLDIRKDPSILQLCPQPMSMTEKAFTMTNQYSIKC
QMSIAKLLQQDTVFFDMFLRVDNDKSQYPVPVLVDNVQTRGTFVNRDTER
KNWKLNRRFFLIDKYSGLGIIDDSVPSFIQYASSIELNFQLIDNGKFYPP
LLKIHYDVHDVDPVTMETDLVNIEFKVTYTMDTSQLDENIKITVGVLSAL
GVVYALVKISSWRRREGIAVLDCTS
Run BLAST on NCBI

transcript from alignment at sc0000260:4519..11480+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017144 ID=TCONS_00017144|Name=TCONS_00017144|organism=Clytia hemisphaerica|type=transcript|length=6962bp|location=Sequence derived from alignment at sc0000260:4519..11480+ (Clytia hemisphaerica)
tatagaTGAATCACTAATTGATATATAGATATAAACTGATAATTGTATAA
CAGAAATGGAAATTCAACACAAGCTTATGTTGCTGGGAGTATTTCTATTA
TGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACCCNA
TTATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACC
CTCAGCGTGTGGTTTAAACCaatattttcaattctccaGTTTAACATGTG
TTGCATGTGGTGAGTTTCAACAGAGAAGTCCAGATTTGGTGTCTTGTACA
TGTCAACCAGGTGCTAAATTAGTATCTTATTTTGGTGGGCCAGTGAAAAC
ATGTCAACCTTGTGCACCCCCTAAGGTAATTTTATGGTTCATTTGAAACT
TGCTTTTAGTTTTTCAAACGCTTTTGAAACAATGGAATTTGCTTAAGTGT
GGTGCTTATTCAAAAATGTCAATCTTTATTAACTGAAGAATATCATTTAA
GTAAGAATGTCCTAGAAAAAATCACTCCCTCTACAGTCACTCTCTTATTT
GAACcttttttattcgaatctttctatagttCTAACTAAACACCAGTCCT
CTCAGCTGAAAAGTCGTATAAAATACTCCCTGTAGTCCGAATCTTTCAAT
AATTCGAAGATTTCCCGTCCCTacaagatcgaattagagagagtcaattg
TAATATAAGATAAATAACTTTGGTTTCTAAAAAATAGtatatgaaattat
ttttaacaaCTTTCTCTTTATATTGTCTCTTTTTTTCTAGGACACTCCAC
TGATTCTTGTTTTAGATatgatttttaactttttttgctttCGAATGTAG
CAGTTTTTCATacttttctgactgatttttgtATAGAAAGCATCTAAACT
CTGTTCTTCTTTCCTTTAACACTCGCCCTTTACATCTCCATATCAGCTTC
AATAGTGAGGtcaagtaaatcggtaaaatcacgacgaaggacgaaaattt
aacaggctagtgagtttcaaccaatcaagtttcgtattttcactagcctg
ttacatttctcgtccgtcgtcgtgattatccagTATTAAATCTTCTTTAT
CGACAGGTAGTAACAAATGACGGTTGGGGATGTTCTGATTGTCCAACAGG
GAGACCATACGACTCTACATTAAAGAAATGTGCATCCTGCGTATCACCTT
TACAACACCAAACCGATCGCTCAGAAACAGGTTTTTTGTTGACAAGAAAA
ACTTGCTTACAATGTCAATCTGATACATCGCCTTCTACAAATGAGGGTGT
TTGTAGGAGATGTCATTCACAAGTATTGAAAGTGACTGGTGGTGCCTCTT
GTGCATGTCCCACTGATGATGGTATGTTCGattctttttccaaaataatg
GTGTCACGATGTGTGTCATCGCAACACATTCTCGTACTTATTTCTACCAT
ATattgtgtagatatgtagaatCCGTATATCTACCCATATTGTGTAGATA
CGGTAAATGCTTAACATAAGGACTTATTGTAGTTTTACATATGTACACtt
atatggtagatttacggattctacCTATCTACATATAATATGGTAGATTT
ATGGATGTTTACATATCCacacatatggtagaaataagtgcgAGATTGGC
CTGGTCATCGCACAAAAGCCTAAAAGTAAAAGATGCTGGCCAGTtctggc
atccactaacagattcttgctccttattcttgatatgcgtaagtcatttt
tctagcggaaacaccctaaaaaagccgggatttgacctctctctgttact
aaaaatagaaacacggaggtCAAAACCGGCCTtttcgggtgcttccgtta
aaaaatatgacgtcatcttgacttacgcatatcaagaattttatATGCGG
TTGTTCGGtggtctgtgattcagactagtCTAAAAAGTGGAATATTGACT
TTTCATTAAACTTTCCAATTCTATACGAGCTTCTTTCACTCTTCAAGTTT
TGTTTTAAATCTTTTAAGTATGTTTAAGGTTCATTCATCCTGTGagttgc
aatttttttcatgttttttgtaTTTGCATCTTAGCCCATTGTTACATTCA
TGTATAatatactaggtcacagtgtggatgtaaaccacactgaaacgacc
gccttccatcacgcatctcacgctcgcgaaagagcgcgcgcacattatca
ACGCCTACAtatcatctccagtacattttagattattcattgaaaataga
ttacAATATAGCCATTTTTAATGTCTCGATTATTcgattccgaataaaag
acattcagagaaaaaaaaagagaaacacctgggtaatctagttaaaaaaa
ccgaaagtaaatggtagacaaagtaacgagccaaggcaaaacgagattag
cgtaccactatgaaagaaaccgcctccggcggtcgaaaaTTTTGTACAGT
TGTACAAATCTTTTAAGGTGAATATGAATTTCATTTCAGTATTTACTGGT
GGAGTTTGTTTATCAAGGACAAGTGGGATACCAGCAGACGATACTACATC
ATACATCATACGACACAAAAACAATTTCATGTCTGCTTATTTCAAAGAAT
ACTTTCGTGCTGCCAAAGTACTGTGTCAGGAAAATCAAAACTTCACTGCA
TGTCAACAGCTTGGTAACCTGTGTGTAATGCTCATGTACAACGAAGATAA
TTCAAACCGCGCGGCCACTGATGCGTGCAAAGAATATCTGATTCTAGTCA
GAGCATCAACAGACTACGTGGATGGAATTACAGATTGGCCTCGAAATATG
CCTTGGTTGTACTACAAAGACGACGGCAGTACTGTTGTTTTGGAGAAAGA
AAACGTCCCACAAGCTTTCACGCGTGGTGAGATTCTCAAATTCAATCTTG
TTTCTTATCGTGTAAACGGGTCCTTCTTAGACATCCGTAAAGACCCATCC
ATATTACAATTATGTCCTCAACCAATGTCAATGACCGAGAAAGCATTTAC
GATGACAAACCAATACTCTATCAAATGTCAAATGTCAATTGCTAAACTGT
TGCAACAAGACACTGTCTTCTTTGATATGTTTTTACGTGTCGATAATGAT
AAATCGCAATATCCCGTCCCTGTACTTGTTGACAACGTACAAACTCGTGG
TACGTTCGTTAATCGGGACACGGAACGTAAAAACTGGAAATTAAACCGCC
GTTTCTTTTTAATCGATAAATATTCCGGGCTTGGAATAATTGACGATTCT
GTCCCTTCCTTTATCCAATACGCATCAAGTATcgagttaaattttcaatt
gatcGATAATGGGAAATTTTATCCACCATTATTGAAAATCCACTATGATG
TCCATGATGTTGATCCGGTTACCATGGAAACCGATTTGGtgaacattgag
tttaaagtgACGTATACGATGGATACAAGCCAACTGGATGAAAATATAAA
GGTATTATACCTTAtcgagttttatttagtcggggttttttttcgttgga
gaaaaatttcgtcacctagaggtattttcgtcactttcacccgaccaaaa
tttcGGGTAAAAGTtctggtcggggataaaaaaatcgggtaaaagttttg
gtcgggtgataaaatatcggggaaaaaattcatcgaggaaaatttcgtca
ccccctcaaaattttcgtcactttcccccgacatttttttccccgataag
gtttTATACTCCTcatttatcattattattatgaaaagtgttaaaatgtt
ctttaataAATTCGGCTTGAGTTTAGTCTAGCAATTTcatcctgtttttt
tttgtctgttGCTGTATCAGTCATGTCTATTGGTTCGAGTCTGCGTAGAC
CTTTAAGCACTACAAATTATTCACGTTTTGTGAAAGGTATTTTTCGTTGA
AGCTAATTTCCTAACTCCAATATAATATTTTACAACTTAGCGATAAATAA
CTGGTTGTAAATAAAAGTACATATGACTAATGAAGAAGCTAATAATTTAC
TTTCGTTCTCTTTTTAGATCACAGTGGGCGTGTTATCAGCATTAGGGGTG
GTTTACGCCCTCGTTAAAATCAGTAGCTGGCGTCGACGAGAAGGAATAGC
AGTGTTAGACTGTACATCATGTATGTTGTTCATCGTTTACGTTTCCAGTG
CCTTAGCTCTTATTTTCTTGGCTGTTATCTTCGTTACCTGTATTCAGTGG
CAATTCTTTTTTAAACGCCAGTCGACCGTTATTCGTGTTCTACCGACCGC
CGATCAAGAGCATTTGATTGCTAGTCTATTAGTTGCTGCATTCGTTATGA
AGTTCTTCGATGTTGTTTATATCTTATACAGTCAAATTTACGTTGatatc
tttttcattgattGGGAACGTCCACGTGGTTCACAAGTGACTGGTACGGA
CGGGCATACAGTGACTACTCCCGTTAGCGTCATGCGGACTTTATTCGTAG
CCAATGAATGGCGTGAGATACAAACGATAAGACGTATCAAACCAACTTTT
CAAGTCATTTTGGTAGTTTTATTCCTACAAGGATTTGGTTTCCAATACTG
GGCAACTACAGATCCAGTTAATCGCTTATCTGTTGATCGGAACATTGATT
ACGTCGGCgaaacaaatctttgtttacgtATTGCCGTTGTTAGCTTACTT
TATTTCGTGATTGCAATCATACAGTGGATTATTTATGGTTTCTTGTATGA
GCGATTTGTAGGAGATGCTATTGgtgatttcattgatttttgttCGATGA
GTAATATTAGTGTTTTTGTTATGTCTCAGAGACAGTACGGTCATTACATA
CACGGACGTTCCGTACACGGCCGCTCCGATACTAGTCTTTACGAACTTTA
CGAGCAGTTTCAACGTGAGGAGGACAACTTATGTGGGAAACGAGGTCTGG
AACCGAATTCAGAACGACAGACTTTCGAGATGGGAATAACGGTGCGCTTT
AGGAATGAANCCTGGAACCGAATTCAGAGCGACAGACTTTCGAGATGGGA
ATAACGGTGCGCTTTAGGAATGAATATTCGAAGATTTTACAACCGTTGTT
ATCAAGAGAAACACAAGGTGCTAGACGTGGTCAACAGAATATGTCGCGTC
AAAACCCCAGTAAGGATTTTTTCTTTAAGTATTAGTTCTAAAAAAGCATA
ATGTGTTAGACTTTCTCCTCCTGTTCCCCTGTTCTCTAAAAAGATTCAAA
AGATTTGCGCAATTCGATTTCGTGCATCGGGTTTATTTTTGGGTGTCGGA
TTTTGTAGCTAAATTTTCTAAAACCTAAAATTGCGATCTCGAATTCCTGA
GAAATTCATTTTCGAAACTTAAGCtccaaagaaatttattttctttaaaa
tagtaTGATTTCAGCATTAGACGGAAAAAGTTTCACCAAAAAGTCACAAT
CTAATGGCAACATAACTGAAAGCTAGTTAATATTTTACGGTTGTTAGCTT
ActaatgattttattttattttttctcataGATTTACCAGGCAGTAATTT
AACACCCGCGTTGGAGCGCAGTGTCAAAGCTTACAACCAAATGAATCGAT
ATTTGTCCTCCTTCGTAGAGCATGCTATAAGAGAAAATGATTATTTCGTC
AAAGATAAATTGTTGTTGGAAAAACTGTTGAAGAATGAATTACAACCGCC
TGAAGAGAAGAGTAAGAACAAGTTATTCTTCTATTAGTTTATCAAGAAAT
TTCTCGCTGAAAATCTCCTTAAATTTTACGGGgagaattatgtttttcaa
AGGGCACGCCTACAGTTTAGCCTGTGTTGGCTATCCAGTATAttgaatac
cttaaaggaactaATTATCGCTTTTTTCGCGGTTATTTTGCCAAAACCAT
GAAAATTTAATTCCtcctgaaaaaactttttcggtcTAAATCAAATTAAN
CGCTTTTTTCGCGGTTATTTTGCCAAAACCACGAAAATTTAATTCCtcct
gaaaaaactttttcggtcTAAATCAAATTAAGTTTCAATATGATTGTCTT
ACttctatgttttcatttcttttagGTGTCTTCTACAACGATGATGGTCG
TTCATTCACTTCCATTCTTCTGTACGGTCAAGAATGGTCTTTGTTATTGT
TCAATCTATTGTTATTCCTCATCGTTGATTGGTTGTCAGGATGGAACGCT
ATTTTAGCAGGTTTTATTGCTTACATGGCTGAAATTATTATCACATCAGT
ACGAGACTCTTTTGGTAAGAAAAATTTAGCCGAAAAAACGATGGTGGATG
AACGATTCttgatttaaaacaaaaactgcATTAGTGATTTACAAGTTTTA
GCTGAAAGTTCTGCTTTCTAAACTGTTAACCAAAGTTTGTTGGTTAAATA
TCGTTTACGCTGGCTATAGATtctggatttttttaaataaaggggTCTCA
AAAGCGTAATTCTACAATTAAGCTAACAAATTTAATTTGGGAAAAGTGTT
GTgataatgaaatcaaaattcgAGAGATTGAGATTTACGATGTTGATGGA
ATCTATGAAACTAATACTACAATATGAGTAGTTCTTTTAAATGATGATTT
ATGGTACCTATAAACCCAGTGAAACACTAAATTGCTACATGATGATCAAT
CATCTTTCTAACTTATTACATTATTGTGTGTATAGctgtattgggctctt
ccagaaaaaaaccattcatggggggtggaggatatattgtccaggggtat
tgaaaaaaaactgaaaaactgccatgtccatggggtgaatcagcgatgtc
caggggtaaatatttgtgtccagggggtcaatttgatgcttgtccagggg
taaaacacgtgtccagggggtaaaaaatcgaaatgtccaggggtagatca
aagacaaaataatatatcctccaccccccatgaacgaattttttctggaa
gagcccattaccCTTTTTGACAGCATTGTTCTAAATGGGTCTTATTTTTT
GACggttttgag

Coding sequence (CDS) from alignment at sc0000260:4519..11480+

>TCONS_00017144 ID=TCONS_00017144|Name=TCONS_00017144|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at sc0000260:4519..11480+ (Clytia hemisphaerica)
ATGTCTGCTTATTTCAAAGAATACTTTCGTGCTGCCAAAGTACTGTGTCA
GGAAAATCAAAACTTCACTGCATGTCAACAGCTTGGTAACCTGTGTGTAA
TGCTCATGTACAACGAAGATAATTCAAACCGCGCGGCCACTGATGCGTGC
AAAGAATATCTGATTCTAGTCAGAGCATCAACAGACTACGTGGATGGAAT
TACAGATTGGCCTCGAAATATGCCTTGGTTGTACTACAAAGACGACGGCA
GTACTGTTGTTTTGGAGAAAGAAAACGTCCCACAAGCTTTCACGCGTGGT
GAGATTCTCAAATTCAATCTTGTTTCTTATCGTGTAAACGGGTCCTTCTT
AGACATCCGTAAAGACCCATCCATATTACAATTATGTCCTCAACCAATGT
CAATGACCGAGAAAGCATTTACGATGACAAACCAATACTCTATCAAATGT
CAAATGTCAATTGCTAAACTGTTGCAACAAGACACTGTCTTCTTTGATAT
GTTTTTACGTGTCGATAATGATAAATCGCAATATCCCGTCCCTGTACTTG
TTGACAACGTACAAACTCGTGGTACGTTCGTTAATCGGGACACGGAACGT
AAAAACTGGAAATTAAACCGCCGTTTCTTTTTAATCGATAAATATTCCGG
GCTTGGAATAATTGACGATTCTGTCCCTTCCTTTATCCAATACGCATCAA
GTATcgagttaaattttcaattgatcGATAATGGGAAATTTTATCCACCA
TTATTGAAAATCCACTATGATGTCCATGATGTTGATCCGGTTACCATGGA
AACCGATTTGGtgaacattgagtttaaagtgACGTATACGATGGATACAA
GCCAACTGGATGAAAATATAAAGATCACAGTGGGCGTGTTATCAGCATTA
GGGGTGGTTTACGCCCTCGTTAAAATCAGTAGCTGGCGTCGACGAGAAGG
AATAGCAGTGTTAGACTGTACATCATAGATGTCTGCTTATTTCAAAGAAT
ACTTTCGTGCTGCCAAAGTACTGTGTCAGGAAAATCAAAACTTCACTGCA
TGTCAACAGCTTGGTAACCTGTGTGTAATGCTCATGTACAACGAAGATAA
TTCAAACCGCGCGGCCACTGATGCGTGCAAAGAATATCTGATTCTAGTCA
GAGCATCAACAGACTACGTGGATGGAATTACAGATTGGCCTCGAAATATG
CCTTGGTTGTACTACAAAGACGACGGCAGTACTGTTGTTTTGGAGAAAGA
AAACGTCCCACAAGCTTTCACGCGTGGTGAGATTCTCAAATTCAATCTTG
TTTCTTATCGTGTAAACGGGTCCTTCTTAGACATCCGTAAAGACCCATCC
ATATTACAATTATGTCCTCAACCAATGTCAATGACCGAGAAAGCATTTAC
GATGACAAACCAATACTCTATCAAATGTCAAATGTCAATTGCTAAACTGT
TGCAACAAGACACTGTCTTCTTTGATATGTTTTTACGTGTCGATAATGAT
AAATCGCAATATCCCGTCCCTGTACTTGTTGACAACGTACAAACTCGTGG
TACGTTCGTTAATCGGGACACGGAACGTAAAAACTGGAAATTAAACCGCC
GTTTCTTTTTAATCGATAAATATTCCGGGCTTGGAATAATTGACGATTCT
GTCCCTTCCTTTATCCAATACGCATCAAGTATcgagttaaattttcaatt
gatcGATAATGGGAAATTTTATCCACCATTATTGAAAATCCACTATGATG
TCCATGATGTTGATCCGGTTACCATGGAAACCGATTTGGtgaacattgag
tttaaagtgACGTATACGATGGATACAAGCCAACTGGATGAAAATATAAA
GATCACAGTGGGCGTGTTATCAGCATTAGGGGTGGTTTACGCCCTCGTTA
AAATCAGTAGCTGGCGTCGACGAGAAGGAATAGCAGTGTTAGACTGTACA
TCATAGATGTCTGCTTATTTCAAAGAATACTTTCGTGCTGCCAAAGTACT
GTGTCAGGAAAATCAAAACTTCACTGCATGTCAACAGCTTGGTAACCTGT
GTGTAATGCTCATGTACAACGAAGATAATTCAAACCGCGCGGCCACTGAT
GCGTGCAAAGAATATCTGATTCTAGTCAGAGCATCAACAGACTACGTGGA
TGGAATTACAGATTGGCCTCGAAATATGCCTTGGTTGTACTACAAAGACG
ACGGCAGTACTGTTGTTTTGGAGAAAGAAAACGTCCCACAAGCTTTCACG
CGTGGTGAGATTCTCAAATTCAATCTTGTTTCTTATCGTGTAAACGGGTC
CTTCTTAGACATCCGTAAAGACCCATCCATATTACAATTATGTCCTCAAC
CAATGTCAATGACCGAGAAAGCATTTACGATGACAAACCAATACTCTATC
AAATGTCAAATGTCAATTGCTAAACTGTTGCAACAAGACACTGTCTTCTT
TGATATGTTTTTACGTGTCGATAATGATAAATCGCAATATCCCGTCCCTG
TACTTGTTGACAACGTACAAACTCGTGGTACGTTCGTTAATCGGGACACG
GAACGTAAAAACTGGAAATTAAACCGCCGTTTCTTTTTAATCGATAAATA
TTCCGGGCTTGGAATAATTGACGATTCTGTCCCTTCCTTTATCCAATACG
CATCAAGTATcgagttaaattttcaattgatcGATAATGGGAAATTTTAT
CCACCATTATTGAAAATCCACTATGATGTCCATGATGTTGATCCGGTTAC
CATGGAAACCGATTTGGtgaacattgagtttaaagtgACGTATACGATGG
ATACAAGCCAACTGGATGAAAATATAAAGATCACAGTGGGCGTGTTATCA
GCATTAGGGGTGGTTTACGCCCTCGTTAAAATCAGTAGCTGGCGTCGACG
AGAAGGAATAGCAGTGTTAGACTGTACATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009594XLOC_009594Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017144-proteinTCONS_00017144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017144-exon-sc0000260-1491911889:4519..4893TCONS_00017144-exon-sc0000260-1491911889:4519..4893Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:4519..4893TCONS_00017144-exon-sc0000260-1510915933:4519..4893Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:4519..4893TCONS_00017144-exon-sc0000260-1575043694:4519..4893Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:5625..5889TCONS_00017144-exon-sc0000260-1491911889:5625..5889Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:5625..5889TCONS_00017144-exon-sc0000260-1510915933:5625..5889Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:5625..5889TCONS_00017144-exon-sc0000260-1575043694:5625..5889Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:7008..7969TCONS_00017144-exon-sc0000260-1491911889:7008..7969Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:7008..7969TCONS_00017144-exon-sc0000260-1510915933:7008..7969Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:7008..7969TCONS_00017144-exon-sc0000260-1575043694:7008..7969Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:8536..8638TCONS_00017144-exon-sc0000260-1491911889:8536..8638Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:8536..8638TCONS_00017144-exon-sc0000260-1510915933:8536..8638Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:8536..8638TCONS_00017144-exon-sc0000260-1575043694:8536..8638Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:9298..9627TCONS_00017144-exon-sc0000260-1491911889:9298..9627Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:9298..9627TCONS_00017144-exon-sc0000260-1510915933:9298..9627Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:9298..9627TCONS_00017144-exon-sc0000260-1575043694:9298..9627Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:10000..10179TCONS_00017144-exon-sc0000260-1491911889:10000..10179Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:10000..10179TCONS_00017144-exon-sc0000260-1510915933:10000..10179Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:10000..10179TCONS_00017144-exon-sc0000260-1575043694:10000..10179Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1491911889:10544..11480TCONS_00017144-exon-sc0000260-1491911889:10544..11480Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1510915933:10544..11480TCONS_00017144-exon-sc0000260-1510915933:10544..11480Clytia hemisphaericaexon
TCONS_00017144-exon-sc0000260-1575043694:10544..11480TCONS_00017144-exon-sc0000260-1575043694:10544..11480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:4519..11480 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0870958	0	0	0	0.000326669	0.000329515	1.62808e-05	0.502509	0	0	0.762955	0	1.58922e-06	0.240357	0.16184	0	0.450009	0	0	0	0	0	0.0236721	0	0	0.0305306	0	0.735953	0.680489	0.0283043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019170Meckelin
Vocabulary: Biological Process
TermDefinition
GO:0060271cilium assembly
GO:0010826negative regulation of centrosome duplication
Vocabulary: Cellular Component
TermDefinition
GO:0036038MKS complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060271 cilium assembly
biological_process GO:0010826 negative regulation of centrosome duplication
cellular_component GO:0036038 MKS complex
Blast
[Close]
BLAST of TCONS_00017144 vs. Swiss-Prot (Human)
Match: MKS3 (Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 1.739e-74
Identity = 176/527 (33.40%), Postives = 258/527 (48.96%), Query Frame = 1 
Query:  196 EPSACGLNQYFQFSSLTCVACGEFQQRSPDLVSCTCQPGAKLVSYFGGPVKTCQPCAPP-KVVTNDGWGCSDCPTGRPYDSTLKKCASCVSPLQH-QTDRSETGFLLTRKTCLQCQSDTSPSTNEGV----CRRCHSQVLKVTGGASCACPTDDVFTGGVCLSRTSGIPADDTTSYIIRHKN---NFMSAYFKEYFRAAKVLCQENQNFTACQQLGNLCVMLMYNEDNSNRAATDACKEYLILVR--ASTDYVDGITDWPRNMPWLYYKDDGSTV--VLEKENVPQAFT-RGE----ILKFNLVSYRVNGSFLDIRK-DPSILQLCPQPMSMTEKAFTMTNQYSIKCQMSIAKLLQQ--DTVFFDMFLR-VDNDKSQY--PVPVLVDNVQTRGTFVNRDTERKNWKLNRRFFLIDKYSGLGIIDDSVPSFIQYASSIELNFQLID---NGKFYPPLLKIHYDVHDVDPVTMETDLVNIEFKVTYTMDTSQLDENIKITVGVLSALGVVYALVKISSWRRREGIAVLD 1695
            +P  C  NQYF  S+L+CV CG  Q++     SC C PG +++S  GGP   C+ C    K VT DGW C  CP      S L     C  P+ H   +R   G LL++ TC  C  + +           C RC      V    SCAC   ++ TGG+C S T   P    ++   R+     +  S +F +Y +++   C    N T+CQ LGN+CVM   N ++ + A  DAC  +  +    A    V  I+ W +N+PWL+Y D       VL   ++P  F+ +GE     LKF   SY + G+FL  +  +  +LQLCP   +    A++    Y   C++ I+K+L      +F+D++L   D ++ QY   VPVL  N+Q    FVN+D+    W L RR FL+D  SG      + P  I+ A+ I L+  L+    NG  YPPL+ I Y   D+D     +  V + F VTY MD  +      I +GVL  L V+ +L+K + W+RR G  ++D
Sbjct:   45 QPEKCDNNQYFDISALSCVPCGANQRQDARGTSCVCLPGFQMISNNGGPAIICKKCPENMKGVTEDGWNCISCP------SDLTAEGKCHCPIGHILVERDINGTLLSQATCELCDGNENSFMVVNALGDRCVRCEPTF--VNTSRSCACSEPNILTGGLCFSSTGNFPLRRISA--ARYGEVGMSLTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVM---NMNSYDFATFDACGLFQFIFENTAGLSTVHSISFWRQNLPWLFYGDQLGLAPQVLSSTSLPTNFSFKGENQNTKLKFVAASYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILIDFPTPIFYDVYLEYTDENQHQYILAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDLGTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIAYS--DIDIKDANSQSVKVSFSVTYEMDHGEAHVQTDIALGVLGGLAVLASLLKTAGWKRRIGSPMID 556

HSP 2 Score: 124.02 bits (310), Expect = 1.246e-28
Identity = 84/189 (44.44%), Postives = 123/189 (65.08%), Query Frame = 1 
Query: 1888 LEPNSERQTFEMGITVRFRNEYSKILQPLLSRETQGARRGQQNMSRQNPNLPGSNLTPALERSVKAYNQMNRYLSSFVEHAIRENDYFVKDXXXXXXXXXXXXXXXXXXSVFYNDDGRSFTSILLYGQEWSXXXXXXXXXXIVDWLSGWNAILAGFIAYMAEIIITSVRDSFGKKNLAEKTMVDERFLI 2454
            L PN++ QTFE+ I+ + R  Y +I + L+ +                P    S+     E+S+KAY+ MN++L SF++H  +E DYF+KDKLLLE++L  E   P EKS+FYND+G SF+S+L YG E +LL+F+LL F +VD L+  N ILA F+ Y+ + I   +R++ G+KNLA KT+VD+RFLI
Sbjct:  822 LVPNTDGQTFEIAISNQMRQHYDRIHETLIRK--------------NGPARLLSSSASTFEQSIKAYHMMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIFDLLFFCVVD-LACQNFILASFLTYLQQEIFRYIRNTVGQKNLASKTLVDQRFLI 995
The following BLAST results are available for this feature:
BLAST of TCONS_00017144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MKS31.739e-7433.40Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2[more]
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