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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017143 ID=TCONS_00017143|Name=TCONS_00017143|organism=Clytia hemisphaerica|type=transcript|length=3812bp
ttatagaTGAATCACTAATTGATATATAGATATAAACTGATAATTGTATA
ACAGAAATGGAAATTCAACACAAGCTTATGTTGCTGGGAGTATTTCTATT
ATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACCCN
ATTATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAAC
CCTCAGCGTGTGGTTTAAACCaatattttcaattctccaGTTTAACATGT
GTTGCATGTGGTGAGTTTCAACAGAGAAGTCCAGATTTGGTGTCTTGTAC
ATGTCAACCAGGTGCTAAATTAGTATCTTATTTTGGTGGGCCAGTGAAAA
CATGTCAACCTTGTGCACCCCCTAAGGTAGTAACAAATGACGGTTGGGGA
TGTTCTGATTGTCCAACAGGGAGACCATACGACTCTACATTAAAGAAATG
TGCATCCTGCGTATCACCTTTACAACACCAAACCGATCGCTCAGAAACAG
GTTTTTTGTTGACAAGAAAAACTTGCTTACAATGTCAATCTGATACATCG
CCTTCTACAAATGAGGGTGTTTGTAGGAGATGTCATTCACAAGTATTGAA
AGTGACTGGTGGTGCCTCTTGTGCATGTCCCACTGATGATGTATTTACTG
GTGGAGTTTGTTTATCAAGGACAAGTGGGATACCAGCAGACGATACTACA
TCATACATCATACGACACAAAAACAATTTCATGTCTGCTTATTTCAAAGA
ATACTTTCGTGCTGCCAAAGTACTGTGTCAGGAAAATCAAAACTTCACTG
CATGTCAACAGCTTGGTAACCTGTGTGTAATGCTCATGTACAACGAAGAT
AATTCAAACCGCGCGGCCACTGATGCGTGCAAAGAATATCTGATTCTAGT
CAGAGCATCAACAGACTACGTGGATGGAATTACAGATTGGCCTCGAAATA
TGCCTTGGTTGTACTACAAAGACGACGGCAGTACTGTTGTTTTGGAGAAA
GAAAACGTCCCACAAGCTTTCACGCGTGGTGAGATTCTCAAATTCAATCT
TGTTTCTTATCGTGTAAACGGGTCCTTCTTAGACATCCGTAAAGACCCAT
CCATATTACAATTATGTCCTCAACCAATGTCAATGACCGAGAAAGCATTT
ACGATGACAAACCAATACTCTATCAAATGTCAAATGTCAATTGCTAAACT
GTTGCAACAAGACACTGTCTTCTTTGATATGTTTTTACGTGTCGATAATG
ATAAATCGCAATATCCCGTCCCTGTACTTGTTGACAACGTACAAACTCGT
GGTACGTTCGTTAATCGGGACACGGAACGTAAAAACTGGAAATTAAACCG
CCGTTTCTTTTTAATCGATAAATATTCCGGGCTTGGAATAATTGACGATT
CTGTCCCTTCCTTTATCCAATACGCATCAAGTATcgagttaaattttcaa
ttgatcGATAATGGGAAATTTTATCCACCATTATTGAAAATCCACTATGA
TGTCCATGATGTTGATCCGGTTACCATGGAAACCGATTTGGtgaacattg
agtttaaagtgACGTATACGATGGATACAAGCCAACTGGATGAAAATATA
AAGATCACAGTGGGCGTGTTATCAGCATTAGGGGTGGTTTACGCCCTCGT
TAAAATCAGTAGCTGGCGTCGACGAGAAGGAATAGCAGTGTTAGACTGTA
CATCATGTATGTTGTTCATCGTTTACGTTTCCAGTGCCTTAGCTCTTATT
TTCTTGGCTGTTATCTTCGTTACCTGTATTCAGTGGCAATTCTTTTTTAA
ACGCCAGTCGACCGTTATTCGTGTTCTACCGACCGCCGATCAAGAGCATT
TGATTGCTAGTCTATTAGTTGCTGCATTCGTTATGAAGTTCTTCGATGTT
GTTTATATCTTATACAGTCAAATTTACGTTGatatctttttcattgattG
GGAACGTCCACGTGGTTCACAAGTGACTGGTACGGACGGGCATACAGTGA
CTACTCCCGTTAGCGTCATGCGGACTTTATTCGTAGCCAATGAATGGCGT
GAGATACAAACGATAAGACGTATCAAACCAACTTTTCAAGTCATTTTGGT
AGTTTTATTCCTACAAGGATTTGGTTTCCAATACTGGGCAACTACAGATC
CAGTTAATCGCTTATCTGTTGATCGGAACATTGATTACGTCGGCgaaaca
aatctttgtttacgtATTGCCGTTGTTAGCTTACTTTATTTCGTGATTGC
AATCATACAGTGGATTATTTATGGTTTCTTGTATGAGCGATTTGTAGGAG
ATGCTATTGgtgatttcattgatttttgttCGATGAGTAATATTAGTGTT
TTTGTTATGTCTCAGAGACAGTACGGTCATTACATACACGGACGTTCCGT
ACACGGCCGCTCCGATACTAGTCTTTACGAACTTTACGAGCAGTTTCAAC
GTGAGGAGGACAACTTATGTGGGAAACGAGGTCTGGAACCGAATTCAGAA
CGACAGACTTTCGAGATGGGAATAACGGTGCGCTTTAGGAATGAANCCTG
GAACCGAATTCAGAGCGACAGACTTTCGAGATGGGAATAACGGTGCGCTT
TAGGAATGAATATTCGAAGATTTTACAACCGTTGTTATCAAGAGAAACAC
AAGGTGCTAGACGTGGTCAACAGAATATGTCGCGTCAAAACCCCAATTTA
CCAGGCAGTAATTTAACACCCGCGTTGGAGCGCAGTGTCAAAGCTTACAA
CCAAATGAATCGATATTTGTCCTCCTTCGTAGAGCATGCTATAAGAGAAA
ATGATTATTTCGTCAAAGATAAATTGTTGTTGGAAAAACTGTTGAAGAAT
GAATTACAACCGCCTGAAGAGAAGAGTGTCTTCTACAACGATGATGGTCG
TTCATTCACTTCCATTCTTCTGTACGGTCAAGAATGGTCTTTGTTATTGT
TCAATCTATTGTTATTCCTCATCGTTGATTGGTTGTCAGGATGGAACGCT
ATTTTAGCAGGTTTTATTGCTTACATGGCTGAAATTATTATCACATCAGT
ACGAGACTCTTTTGGTAAGAAAAATTTAGCCGAAAAAACGATGGTGGATG
AACGATTCttgatttaaaacaaaaactgcATTAGTGATTTACAAGTTTTA
GCTGAAAGTTCTGCTTTCTAAACTGTTAACCAAAGTTTGTTGGTTAAATA
TCGTTTACGCTGGCTATAGATtctggatttttttaaataaaggggTCTCA
AAAGCGTAATTCTACAATTAAGCTAACAAATTTAATTTGGGAAAAGTGTT
GTgataatgaaatcaaaattcgAGAGATTGAGATTTACGATGTTGATGGA
ATCTATGAAACTAATACTACAATATGAGTAGTTCTTTTAAATGATGATTT
ATGGTACCTATAAACCCAGTGAAACACTAAATTGCTACATGATGATCAAT
CATCTTTCTAACTTATTACATTATTGTGTGTATAGctgtattgggctctt
ccagaaaaaaaccattcatggggggtggaggatatattgtccaggggtat
tgaaaaaaaactgaaaaactgccatgtccatggggtgaatcagcgatgtc
caggggtaaatatttgtgtccagggggtcaatttgatgcttgtccagggg
taaaacacgtgtccagggggtaaaaaatcgaaatgtccaggggtagatca
aagacaaaataatatatcctccaccccccatgaacgaattttttctggaa
gagcccattaccCTTTTTGACAGCATTGTTCTAAATGGGTCTTATTTTTT
GACggttttgag Run BLAST on NCBI transcript from alignment at sc0000260:4518..11480+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017143 ID=TCONS_00017143|Name=TCONS_00017143|organism=Clytia hemisphaerica|type=transcript|length=6963bp|location=Sequence derived from alignment at sc0000260:4518..11480+ (Clytia hemisphaerica)
ttatagaTGAATCACTAATTGATATATAGATATAAACTGATAATTGTATA
ACAGAAATGGAAATTCAACACAAGCTTATGTTGCTGGGAGTATTTCTATT
ATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAACCCN
ATTATGGAGGAGAGAATGTCAAAGTACTCAACTTTTCAACAATATTGAAC
CCTCAGCGTGTGGTTTAAACCaatattttcaattctccaGTTTAACATGT
GTTGCATGTGGTGAGTTTCAACAGAGAAGTCCAGATTTGGTGTCTTGTAC
ATGTCAACCAGGTGCTAAATTAGTATCTTATTTTGGTGGGCCAGTGAAAA
CATGTCAACCTTGTGCACCCCCTAAGGTAATTTTATGGTTCATTTGAAAC
TTGCTTTTAGTTTTTCAAACGCTTTTGAAACAATGGAATTTGCTTAAGTG
TGGTGCTTATTCAAAAATGTCAATCTTTATTAACTGAAGAATATCATTTA
AGTAAGAATGTCCTAGAAAAAATCACTCCCTCTACAGTCACTCTCTTATT
TGAACcttttttattcgaatctttctatagttCTAACTAAACACCAGTCC
TCTCAGCTGAAAAGTCGTATAAAATACTCCCTGTAGTCCGAATCTTTCAA
TAATTCGAAGATTTCCCGTCCCTacaagatcgaattagagagagtcaatt
gTAATATAAGATAAATAACTTTGGTTTCTAAAAAATAGtatatgaaatta
tttttaacaaCTTTCTCTTTATATTGTCTCTTTTTTTCTAGGACACTCCA
CTGATTCTTGTTTTAGATatgatttttaactttttttgctttCGAATGTA
GCAGTTTTTCATacttttctgactgatttttgtATAGAAAGCATCTAAAC
TCTGTTCTTCTTTCCTTTAACACTCGCCCTTTACATCTCCATATCAGCTT
CAATAGTGAGGtcaagtaaatcggtaaaatcacgacgaaggacgaaaatt
taacaggctagtgagtttcaaccaatcaagtttcgtattttcactagcct
gttacatttctcgtccgtcgtcgtgattatccagTATTAAATCTTCTTTA
TCGACAGGTAGTAACAAATGACGGTTGGGGATGTTCTGATTGTCCAACAG
GGAGACCATACGACTCTACATTAAAGAAATGTGCATCCTGCGTATCACCT
TTACAACACCAAACCGATCGCTCAGAAACAGGTTTTTTGTTGACAAGAAA
AACTTGCTTACAATGTCAATCTGATACATCGCCTTCTACAAATGAGGGTG
TTTGTAGGAGATGTCATTCACAAGTATTGAAAGTGACTGGTGGTGCCTCT
TGTGCATGTCCCACTGATGATGGTATGTTCGattctttttccaaaataat
gGTGTCACGATGTGTGTCATCGCAACACATTCTCGTACTTATTTCTACCA
TATattgtgtagatatgtagaatCCGTATATCTACCCATATTGTGTAGAT
ACGGTAAATGCTTAACATAAGGACTTATTGTAGTTTTACATATGTACACt
tatatggtagatttacggattctacCTATCTACATATAATATGGTAGATT
TATGGATGTTTACATATCCacacatatggtagaaataagtgcgAGATTGG
CCTGGTCATCGCACAAAAGCCTAAAAGTAAAAGATGCTGGCCAGTtctgg
catccactaacagattcttgctccttattcttgatatgcgtaagtcattt
ttctagcggaaacaccctaaaaaagccgggatttgacctctctctgttac
taaaaatagaaacacggaggtCAAAACCGGCCTtttcgggtgcttccgtt
aaaaaatatgacgtcatcttgacttacgcatatcaagaattttatATGCG
GTTGTTCGGtggtctgtgattcagactagtCTAAAAAGTGGAATATTGAC
TTTTCATTAAACTTTCCAATTCTATACGAGCTTCTTTCACTCTTCAAGTT
TTGTTTTAAATCTTTTAAGTATGTTTAAGGTTCATTCATCCTGTGagttg
caatttttttcatgttttttgtaTTTGCATCTTAGCCCATTGTTACATTC
ATGTATAatatactaggtcacagtgtggatgtaaaccacactgaaacgac
cgccttccatcacgcatctcacgctcgcgaaagagcgcgcgcacattatc
aACGCCTACAtatcatctccagtacattttagattattcattgaaaatag
attacAATATAGCCATTTTTAATGTCTCGATTATTcgattccgaataaaa
gacattcagagaaaaaaaaagagaaacacctgggtaatctagttaaaaaa
accgaaagtaaatggtagacaaagtaacgagccaaggcaaaacgagatta
gcgtaccactatgaaagaaaccgcctccggcggtcgaaaaTTTTGTACAG
TTGTACAAATCTTTTAAGGTGAATATGAATTTCATTTCAGTATTTACTGG
TGGAGTTTGTTTATCAAGGACAAGTGGGATACCAGCAGACGATACTACAT
CATACATCATACGACACAAAAACAATTTCATGTCTGCTTATTTCAAAGAA
TACTTTCGTGCTGCCAAAGTACTGTGTCAGGAAAATCAAAACTTCACTGC
ATGTCAACAGCTTGGTAACCTGTGTGTAATGCTCATGTACAACGAAGATA
ATTCAAACCGCGCGGCCACTGATGCGTGCAAAGAATATCTGATTCTAGTC
AGAGCATCAACAGACTACGTGGATGGAATTACAGATTGGCCTCGAAATAT
GCCTTGGTTGTACTACAAAGACGACGGCAGTACTGTTGTTTTGGAGAAAG
AAAACGTCCCACAAGCTTTCACGCGTGGTGAGATTCTCAAATTCAATCTT
GTTTCTTATCGTGTAAACGGGTCCTTCTTAGACATCCGTAAAGACCCATC
CATATTACAATTATGTCCTCAACCAATGTCAATGACCGAGAAAGCATTTA
CGATGACAAACCAATACTCTATCAAATGTCAAATGTCAATTGCTAAACTG
TTGCAACAAGACACTGTCTTCTTTGATATGTTTTTACGTGTCGATAATGA
TAAATCGCAATATCCCGTCCCTGTACTTGTTGACAACGTACAAACTCGTG
GTACGTTCGTTAATCGGGACACGGAACGTAAAAACTGGAAATTAAACCGC
CGTTTCTTTTTAATCGATAAATATTCCGGGCTTGGAATAATTGACGATTC
TGTCCCTTCCTTTATCCAATACGCATCAAGTATcgagttaaattttcaat
tgatcGATAATGGGAAATTTTATCCACCATTATTGAAAATCCACTATGAT
GTCCATGATGTTGATCCGGTTACCATGGAAACCGATTTGGtgaacattga
gtttaaagtgACGTATACGATGGATACAAGCCAACTGGATGAAAATATAA
AGGTATTATACCTTAtcgagttttatttagtcggggttttttttcgttgg
agaaaaatttcgtcacctagaggtattttcgtcactttcacccgaccaaa
atttcGGGTAAAAGTtctggtcggggataaaaaaatcgggtaaaagtttt
ggtcgggtgataaaatatcggggaaaaaattcatcgaggaaaatttcgtc
accccctcaaaattttcgtcactttcccccgacatttttttccccgataa
ggtttTATACTCCTcatttatcattattattatgaaaagtgttaaaatgt
tctttaataAATTCGGCTTGAGTTTAGTCTAGCAATTTcatcctgttttt
ttttgtctgttGCTGTATCAGTCATGTCTATTGGTTCGAGTCTGCGTAGA
CCTTTAAGCACTACAAATTATTCACGTTTTGTGAAAGGTATTTTTCGTTG
AAGCTAATTTCCTAACTCCAATATAATATTTTACAACTTAGCGATAAATA
ACTGGTTGTAAATAAAAGTACATATGACTAATGAAGAAGCTAATAATTTA
CTTTCGTTCTCTTTTTAGATCACAGTGGGCGTGTTATCAGCATTAGGGGT
GGTTTACGCCCTCGTTAAAATCAGTAGCTGGCGTCGACGAGAAGGAATAG
CAGTGTTAGACTGTACATCATGTATGTTGTTCATCGTTTACGTTTCCAGT
GCCTTAGCTCTTATTTTCTTGGCTGTTATCTTCGTTACCTGTATTCAGTG
GCAATTCTTTTTTAAACGCCAGTCGACCGTTATTCGTGTTCTACCGACCG
CCGATCAAGAGCATTTGATTGCTAGTCTATTAGTTGCTGCATTCGTTATG
AAGTTCTTCGATGTTGTTTATATCTTATACAGTCAAATTTACGTTGatat
ctttttcattgattGGGAACGTCCACGTGGTTCACAAGTGACTGGTACGG
ACGGGCATACAGTGACTACTCCCGTTAGCGTCATGCGGACTTTATTCGTA
GCCAATGAATGGCGTGAGATACAAACGATAAGACGTATCAAACCAACTTT
TCAAGTCATTTTGGTAGTTTTATTCCTACAAGGATTTGGTTTCCAATACT
GGGCAACTACAGATCCAGTTAATCGCTTATCTGTTGATCGGAACATTGAT
TACGTCGGCgaaacaaatctttgtttacgtATTGCCGTTGTTAGCTTACT
TTATTTCGTGATTGCAATCATACAGTGGATTATTTATGGTTTCTTGTATG
AGCGATTTGTAGGAGATGCTATTGgtgatttcattgatttttgttCGATG
AGTAATATTAGTGTTTTTGTTATGTCTCAGAGACAGTACGGTCATTACAT
ACACGGACGTTCCGTACACGGCCGCTCCGATACTAGTCTTTACGAACTTT
ACGAGCAGTTTCAACGTGAGGAGGACAACTTATGTGGGAAACGAGGTCTG
GAACCGAATTCAGAACGACAGACTTTCGAGATGGGAATAACGGTGCGCTT
TAGGAATGAANCCTGGAACCGAATTCAGAGCGACAGACTTTCGAGATGGG
AATAACGGTGCGCTTTAGGAATGAATATTCGAAGATTTTACAACCGTTGT
TATCAAGAGAAACACAAGGTGCTAGACGTGGTCAACAGAATATGTCGCGT
CAAAACCCCAGTAAGGATTTTTTCTTTAAGTATTAGTTCTAAAAAAGCAT
AATGTGTTAGACTTTCTCCTCCTGTTCCCCTGTTCTCTAAAAAGATTCAA
AAGATTTGCGCAATTCGATTTCGTGCATCGGGTTTATTTTTGGGTGTCGG
ATTTTGTAGCTAAATTTTCTAAAACCTAAAATTGCGATCTCGAATTCCTG
AGAAATTCATTTTCGAAACTTAAGCtccaaagaaatttattttctttaaa
atagtaTGATTTCAGCATTAGACGGAAAAAGTTTCACCAAAAAGTCACAA
TCTAATGGCAACATAACTGAAAGCTAGTTAATATTTTACGGTTGTTAGCT
TActaatgattttattttattttttctcataGATTTACCAGGCAGTAATT
TAACACCCGCGTTGGAGCGCAGTGTCAAAGCTTACAACCAAATGAATCGA
TATTTGTCCTCCTTCGTAGAGCATGCTATAAGAGAAAATGATTATTTCGT
CAAAGATAAATTGTTGTTGGAAAAACTGTTGAAGAATGAATTACAACCGC
CTGAAGAGAAGAGTAAGAACAAGTTATTCTTCTATTAGTTTATCAAGAAA
TTTCTCGCTGAAAATCTCCTTAAATTTTACGGGgagaattatgtttttca
aAGGGCACGCCTACAGTTTAGCCTGTGTTGGCTATCCAGTATAttgaata
ccttaaaggaactaATTATCGCTTTTTTCGCGGTTATTTTGCCAAAACCA
TGAAAATTTAATTCCtcctgaaaaaactttttcggtcTAAATCAAATTAA
NCGCTTTTTTCGCGGTTATTTTGCCAAAACCACGAAAATTTAATTCCtcc
tgaaaaaactttttcggtcTAAATCAAATTAAGTTTCAATATGATTGTCT
TACttctatgttttcatttcttttagGTGTCTTCTACAACGATGATGGTC
GTTCATTCACTTCCATTCTTCTGTACGGTCAAGAATGGTCTTTGTTATTG
TTCAATCTATTGTTATTCCTCATCGTTGATTGGTTGTCAGGATGGAACGC
TATTTTAGCAGGTTTTATTGCTTACATGGCTGAAATTATTATCACATCAG
TACGAGACTCTTTTGGTAAGAAAAATTTAGCCGAAAAAACGATGGTGGAT
GAACGATTCttgatttaaaacaaaaactgcATTAGTGATTTACAAGTTTT
AGCTGAAAGTTCTGCTTTCTAAACTGTTAACCAAAGTTTGTTGGTTAAAT
ATCGTTTACGCTGGCTATAGATtctggatttttttaaataaaggggTCTC
AAAAGCGTAATTCTACAATTAAGCTAACAAATTTAATTTGGGAAAAGTGT
TGTgataatgaaatcaaaattcgAGAGATTGAGATTTACGATGTTGATGG
AATCTATGAAACTAATACTACAATATGAGTAGTTCTTTTAAATGATGATT
TATGGTACCTATAAACCCAGTGAAACACTAAATTGCTACATGATGATCAA
TCATCTTTCTAACTTATTACATTATTGTGTGTATAGctgtattgggctct
tccagaaaaaaaccattcatggggggtggaggatatattgtccaggggta
ttgaaaaaaaactgaaaaactgccatgtccatggggtgaatcagcgatgt
ccaggggtaaatatttgtgtccagggggtcaatttgatgcttgtccaggg
gtaaaacacgtgtccagggggtaaaaaatcgaaatgtccaggggtagatc
aaagacaaaataatatatcctccaccccccatgaacgaattttttctgga
agagcccattaccCTTTTTGACAGCATTGTTCTAAATGGGTCTTATTTTT
TGACggttttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017143-exon-sc0000260-1491911889:4518..4893 | TCONS_00017143-exon-sc0000260-1491911889:4518..4893 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:4518..4893 | TCONS_00017143-exon-sc0000260-1510915933:4518..4893 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:4518..4893 | TCONS_00017143-exon-sc0000260-1575043694:4518..4893 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1491911889:5625..5889 | TCONS_00017143-exon-sc0000260-1491911889:5625..5889 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:5625..5889 | TCONS_00017143-exon-sc0000260-1510915933:5625..5889 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:5625..5889 | TCONS_00017143-exon-sc0000260-1575043694:5625..5889 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1491911889:7008..7969 | TCONS_00017143-exon-sc0000260-1491911889:7008..7969 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:7008..7969 | TCONS_00017143-exon-sc0000260-1510915933:7008..7969 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:7008..7969 | TCONS_00017143-exon-sc0000260-1575043694:7008..7969 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1491911889:8536..9627 | TCONS_00017143-exon-sc0000260-1491911889:8536..9627 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:8536..9627 | TCONS_00017143-exon-sc0000260-1510915933:8536..9627 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:8536..9627 | TCONS_00017143-exon-sc0000260-1575043694:8536..9627 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1491911889:10000..10179 | TCONS_00017143-exon-sc0000260-1491911889:10000..10179 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:10000..10179 | TCONS_00017143-exon-sc0000260-1510915933:10000..10179 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:10000..10179 | TCONS_00017143-exon-sc0000260-1575043694:10000..10179 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1491911889:10544..11480 | TCONS_00017143-exon-sc0000260-1491911889:10544..11480 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1510915933:10544..11480 | TCONS_00017143-exon-sc0000260-1510915933:10544..11480 | Clytia hemisphaerica | exon |
| TCONS_00017143-exon-sc0000260-1575043694:10544..11480 | TCONS_00017143-exon-sc0000260-1575043694:10544..11480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:4518..11480 + |
Blast
BLAST of TCONS_00017143 vs. Swiss-Prot (Human)
Match: MKS3 (Meckelin OS=Homo sapiens GN=TMEM67 PE=1 SV=2) HSP 1 Score: 513.072 bits (1320), Expect = 1.599e-161 Identity = 301/827 (36.40%), Postives = 445/827 (53.81%), Query Frame = 2
Query: 197 EPSACGLNQYFQFSSLTCVACGEFQQRSPDLVSCTCQPGAKLVSYFGGPVKTCQPCAPP-KVVTNDGWGCSDCPTGRPYDSTLKKCASCVSPLQH-QTDRSETGFLLTRKTCLQCQSDTSP----STNEGVCRRCHSQVLKVTGGASCACPTDDVFTGGVCLSRTSGIPADDTTSYIIRHKN---NFMSAYFKEYFRAAKVLCQENQNFTACQQLGNLCVMLMYNEDNSNRAATDACK--EYLILVRASTDYVDGITDWPRNMPWLYYKDDGSTV--VLEKENVPQAFT-RGE----ILKFNLVSYRVNGSFLDIRK-DPSILQLCPQPMSMTEKAFTMTNQYSIKCQMSIAKLLQQ--DTVFFDMFLR-VDNDKSQY--PVPVLVDNVQTRGTFVNRDTERKNWKLNRRFFLIDKYSGLGIIDDSVPSFIQYASSIELNFQLIDN---GKFYPPLLKIHYDVHDVDPVTMETDLVNIEFKVTYTMDTSQLDENIKITVGVLSALGVVYALVKISSWRRREGIAVLDCTSCMLFIVYVSSALALIFLAVIFVTCIQWQFFFKRQSTVIRVLPTADQEHLIASLLVAAFVMKFFDVVYILYSQIYVDIFFIDWERPRGSQVTGTDGH----TVTTPVSVMRTLFVANEWREIQTIRRIKPTFQVILVVLFLQGFGFQYWATTDPVNRLSVDRNI-DYVGETNLCLRIAVVSLLYFVIAIIQWIIYGFLYERFVGDAIGDFIDFCSMSNISVFVMSQRQYGHYIHGRSVHGRSDTSLYELYEQFQREEDNLCGKRGLEPNSERQTFEMGITVRFRNEXWNRIQSDRLSR 2581
+P C NQYF S+L+CV CG Q++ SC C PG +++S GGP C+ C K VT DGW C CP S L C P+ H +R G LL++ TC C + + + C RC + + SCAC ++ TGG+C S T P ++ R+ + S +F +Y +++ C N T+CQ LGN+CVM N ++ + A DAC +++ A V I+ W +N+PWL+Y D VL ++P F+ +GE LKF SY + G+FL + + +LQLCP + A++ Y C++ I+K+L +F+D++L D ++ QY VPVL N+Q FVN+D+ W L RR FL+D SG + P I+ A+ I L+ L+ N G YPPL+ I Y D+D + V + F VTY MD + I +GVL L V+ +L+K + W+RR G ++D + + F+VY + LA +F + T + W FFK Q +V +LP QE + + AF +K ++ L SQI +D+FFIDWERP+G + +G + T PVS+ RT FVANEW EIQT+R+I FQV+ V+ FL+ GF+ A D + LS RN Y+ + LR AV + L+ I IIQ + + YERF+ D I F+D CSMSNISVF++S + +G+YIHGRSVHG +DT++ E+ +RE +NLC +RGL PN++ QTFE+ I+ + R + ++RI + +
Sbjct: 45 QPEKCDNNQYFDISALSCVPCGANQRQDARGTSCVCLPGFQMISNNGGPAIICKKCPENMKGVTEDGWNCISCP------SDLTAEGKCHCPIGHILVERDINGTLLSQATCELCDGNENSFMVVNALGDRCVRCEPTFVNTS--RSCACSEPNILTGGLCFSSTGNFPLRRISA--ARYGEVGMSLTSEWFAKYLQSSAAACWVYANLTSCQALGNMCVM---NMNSYDFATFDACGLFQFIFENTAGLSTVHSISFWRQNLPWLFYGDQLGLAPQVLSSTSLPTNFSFKGENQNTKLKFVAASYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYSFGTTYQQNCEIPISKILIDFPTPIFYDVYLEYTDENQHQYILAVPVLNLNLQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDLGTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIAYS--DIDIKDANSQSVKVSFSVTYEMDHGEAHVQTDIALGVLGGLAVLASLLKTAGWKRRIGSPMIDLQTVVKFLVYYAGDLANVFFIITVGTGLYWLIFFKAQKSVSVLLPMPIQEERFVTYVGCAFALKALQFLHKLISQITIDVFFIDWERPKGKVLKAVEGEGGVRSATVPVSIWRTYFVANEWNEIQTVRKINSLFQVLTVLFFLEVVGFKNLALMDSSSSLS--RNPPSYIAPYSCILRYAVSAALWLAIGIIQVVFFAVFYERFIEDKIRQFVDLCSMSNISVFLLSHKCFGYYIHGRSVHGHADTNMEEMNMNLKREAENLCSQRGLVPNTDGQTFEIAISNQMR-QHYDRIHETLIRK 853 HSP 2 Score: 123.635 bits (309), Expect = 2.502e-28 Identity = 86/189 (45.50%), Postives = 125/189 (66.14%), Query Frame = 1
Query: 2548 LEPNSERQTFEMGITVRFRNEYSKILQPLLSRETQGARRGQQNMSRQNPNLPGSNLTPALERSVKAYNQMNRYLSSFVEHAIRENDYFVKDXXXXXXXXXXXXXXXXXXSVFYNDDGRSFTSILLYGQEWSXXXXXXXXXXIVDWLSGWNAILAGFIAYMAEIIITSVRDSFGKKNLAEKTMVDERFLI 3114
L PN++ QTFE+ I+ + R Y +I + L+ R+ AR + S E+S+KAY+ MN++L SF++H +E DYF+KDKLLLE++L E P EKS+FYND+G SF+S+L YG E +LL+F+LL F +VD L+ N ILA F+ Y+ + I +R++ G+KNLA KT+VD+RFLI
Sbjct: 822 LVPNTDGQTFEIAISNQMRQHYDRIHETLI-RKNGPARLLSSSAS-------------TFEQSIKAYHMMNKFLGSFIDHVHKEMDYFIKDKLLLERILGMEFMEPMEKSIFYNDEGYSFSSVLYYGNEATLLIFDLLFFCVVD-LACQNFILASFLTYLQQEIFRYIRNTVGQKNLASKTLVDQRFLI 995
The following BLAST results are available for this feature:
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