TCONS_00016911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016911
Unique NameTCONS_00016911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016911 ID=TCONS_00016911|Name=TCONS_00016911|organism=Clytia hemisphaerica|type=transcript|length=1484bp
CTTATCGAGCGATGTTTTGTAAAATGTATTACGCCCAGCACGCCCTTGAT
ATGCAGGAGTAGTAAGGGCGGCAACTTGAACGAATTGGTAGACTGTTTGA
GAGGGACTGGAGATGAATCACGTGATCAAATTGAAAACCATCTACCAAAT
AAGAAGCTTGACCAGACCAGCCAAGAGGACTTACAAATATTGCACCAGTC
ATCTTGTGATATTCATAAATTTATCCAACTTTTTCATCAACCGTACATTT
TACTGACCCAACCCGATGTTTCCCCGATATGGTGTCCAGCAGCAAACGAT
TATCAAATTCATGAAATCCGAAATACAAAAATCGGTGAAATCGGGAAACA
CTTGCAATATTTGAAATCAACTGGAATCaagatttttgtttgtttattgc
cAATGGTGACGACACTAAATGTTATACACGCAGCTCACATTGTCGAGGTT
TCGAGCGATGACTATTTGTGGATTTTGCTGGAAAAcgaaatttcgaaatt
tgatgTTGAATTTGAACCGATCAATGTGTTTTATTTGCAAACAAAGAACG
AAAGTTTTTGTCCAATGTCCAAGTCATCAGAATTGCAAACTCAATCTGta
ttgacaatcaaacaaaaatcgAAAGATCATCCAACAAGATCCACATTACA
AACCATTGGAAAATTCTctgaaaacaaaattgaaaaatcagaTGAGTTGA
TTCGATACACGACTAATTTTCGTccacaattttttatcaaatatccTCAA
ATTCGAATAGTTACTGCAATCGATCCTCCATTCGTATCCTCCATTCCGTT
ATACAATGAGAAATGTCATGGTCGCAAATGTATGAAATatgtgaaaaatc
tacaaacgggagataggaaagtagaaaccTTTTGTTGTGTTGGTTTGTGT
ATTGATATGATGTCATATTTGGAAACTGATATGAAAGCACAGTTTGAAAT
TTGGCTTGTGGAAGATGGCTTTTATGGCGCTAAAATTAACGGCACGTGGA
ATGGAATGGTCAGTGACGTCGTTCAAAATAaagctgacgtcatcattgcG
CCCTTCTTAATGACACGGGACCGACTTTTAGCTTTAGACTTCACAGACGA
ATCATATTTAAATGGTGGAATGGCACTAGTAACCGTCGCACAGAAATCTA
ACATGACCCTTTTCAATTTTCGAACCTTCCAGCCTCTATCTGCATCAATG
TGGTTTGTTTTGTTATCCTTGACTTTAGNATTCCAGCCTCTATCCGCTTC
AATGTGGTTTGTTTTGTTATCCTTGACTTTAGCGGCTAGTTTGATTGTAT
ATTTTGCTGAGAAGTTGTCTATCAAAACACCTGTGTACCCACTATGGGAG
AGTGTCAACTATTTCACTGGATTGGCTTTTGCCCGTGATATTGGTGCATT
GAATCCAGTGAAATTGGGTTCGAGAGTGATTGGAATTAGTGTAGCTTTGT
TTATGCTGATTGTCATGTCAACCTACACTGCTGT
Run BLAST on NCBI

protein sequence of TCONS_00016911-protein

>TCONS_00016911-protein ID=TCONS_00016911-protein|Name=TCONS_00016911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
LIERCFVKCITPSTPLICRSSKGGNLNELVDCLRGTGDESRDQIENHLPN
KKLDQTSQEDLQILHQSSCDIHKFIQLFHQPYILLTQPDVSPIWCPAAND
YQIHEIRNTKIGEIGKHLQYLKSTGIKIFVCLLPMVTTLNVIHAAHIVEV
SSDDYLWILLENEISKFDVEFEPINVFYLQTKNESFCPMSKSSELQTQSV
LTIKQKSKDHPTRSTLQTIGKFSENKIEKSDELIRYTTNFRPQFFIKYPQ
IRIVTAIDPPFVSSIPLYNEKCHGRKCMKYVKNLQTGDRKVETFCCVGLC
IDMMSYLETDMKAQFEIWLVEDGFYGAKINGTWNGMVSDVVQNKADVIIA
PFLMTRDRLLALDFTDESYLNGGMALVTVAQKSNMTLFNFRTFQPLSASM
WFVLLSLTLXFQPLSASMWFVLLSLTLAASLIVYFAEKLSIKTPVYPLWE
SVNYFTGLAFARDIGALNPVKLGSRVIGISVALFMLIVMSTYTA
Run BLAST on NCBI

transcript from alignment at sc0000254:32037..37239+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016911 ID=TCONS_00016911|Name=TCONS_00016911|organism=Clytia hemisphaerica|type=transcript|length=5203bp|location=Sequence derived from alignment at sc0000254:32037..37239+ (Clytia hemisphaerica)
CTTATCGAGCGATGTTTTGTAAAATGTATTACGCCCAGCACGCCCTTGAT
ATGCAGGAGTAGTAAGGGCGGCAACTTGAACGAATTGGTAGACTGTTTGA
GAGGGACTGGAGATGAATCACGTGATCAAATTGAAAACCATCTACCAAAT
AAGAAGGTAATATTTTTCATCACTTATGTTCCCCTTTAAATGATCATTTT
TCTAAAAGTCTTCTAGCAGTGTTAATATAAGGCCataggggggtactagg
tttccgaggtgacgggtatatccgagccaaaaatcgaaagttGACTCTTA
GAGAGAGAGGAAAAATTGGTACATACTtttataatggtggaaattacgGA
AGCTAGGTAACTTTACCAagcatgaaaaacttttttgttttgagctCATT
TTTACATaggtgttcccgtttcatatcagacacacatttcatatttcaaa
aaaatgtttttcttttttaatttctgatcaatcttgctccacatccgtgt
caatccaatgtgaaaaaacttgtcaaacaaaacaaaacctttaactcgTC
TTTTGCATCTATTTAGCTTGACCAGACCAGCCAAGAGGACTTACAAATAT
TGCACCAGTCATCTTGTGATATTCATAAATTTATCCAACTTTTTCATCAA
CCGTACATTTTACTGACCCAACCCGATGTTTCCCCGATATGGTGTCCAGC
AGCAAACGATTATCAAATTCATGAAATCCGAAATACAAAAATCGGTGAAA
TCGGGAAACACTTGCAATATTTGAAATCAACTGGAATCaagatttttgtt
tgtttattgccAATGGTGACGACACTAAATGTTATACACGCAGCTCACAT
TGTCGAGGTTTCGAGCGATGACTATTTGTGGATTTTGCTGGAAAAcgaaa
tttcgaaatttgatgTTGAATTTGAACCGATCAATGTGTTTTATTTGCAA
ACAAAGAACGAAAGTTTTTGTCCAATGTAAGTAAAACATCAAAagacaat
ttttatttttaatatacCGAGAGTTCTCCTGGTCCTCCTGTTGTCGACGA
ATTCTGGGCTAAATATACGAACCTATAATTATAAAGTACGCATGCACTGT
CTACTGATAATAAAATGTAGTAAATCGACTTAGGAAGACCAGGTAGTAAc
catgcaaaataaaagtttcCGAAAAGTTTCCCTCCCTGGACACCCAGGCA
AGGATTGGAACTGATATCCTATGCCATTCGGGCTGGAACAATATCAGGCG
GGAAAAGGGAGCTTAGAATCTAGGTAATCGTACGAAGAGAGATGGAAAGC
ACATTTTCACCAAAGTTTCATCACTCTTCAACGAGGCCCATCTTTGATAT
ATTCTTTTTAAACTTCAGGTCCAAGTCATCAGAATTGCAAACTCAATCTG
tattgacaatcaaacaaaaatcgAAAGATCATCCAACAAGATCCACATTA
CAAACCATTGGAAAATTCTctgaaaacaaaattgaaaaatcagaTGAGTT
GATTCGATACACGACTAATTTTCGTccacaattttttatcaaatatccTC
AAATTCGAATAGTTACTGCAATCGATCCTCCATTCGTATCCTCCATTCCG
TTATACAATGAGAAATGTCATGGTCGCAAATGTATGAAATatgtgaaaaa
tctacaaacgggagataggaaagtagaaaccTTTTGTTGTGTTGGTTTGT
GTATTGATATGATGTCATATTTGGAAACTGATATGAAAGCACAGTTTGAA
ATTTGGCTTGGTAGGTGAATTACTGGTGAATTTATGGGATGAGATGAAGT
TTTttcaagctcttatttgatttggttggtcgttaaccagtaataaaaca
attttgttactttttctaaagaatgcatcatttctaatttctcaaattac
caatcattaaagtatcttataaaaactccatctcatctggaaTGTATAAA
CAAAACGGGCCCTTCCTGAAAGATGGGGGCTGGAGGATAGACTATTGTCC
AGGGGTTATATTGATGTTTTTCCAGGGGGGTTTGACCTTGTGAGGGGGTT
AATTTCCAAAAACTATTTCAACACCCACCccaaatattcaatttttttat
tgagaGCCCAatactacaatcatggacaaaatatttgagacaaaggggat
ttccctgcgaaatttcaaacaccacaaatgattttgaaGCGCGTTAACTt
ggttaaactacagttggaaagaaGAGTTaaatctcaggatttaaaagctc
aaatttcaaactttaaattctgaaaaatgttagaatactaaaatctcaat
atatttcggccATGATTGtactttcttttgatttgattgcAAGTGTGAGT
Gagttttaaggttttttaaaataggccgtggccagtggatggttaaatgt
tcaaaaataaagaaaaaattcaaaatgtctttgACCAAGCTTTGGCAatt
gattttggtcaatttgagggGCTGAATCCGAATTTGAATCTTACTAAAcg
tgaaaacccgcagtttttgtgtaatttttcaattttttgcgtttccaggc
aaaattgcaaggcttGAAATaccatgatttttggggggtcttcaaattag
aaaaagacctataccacgcTCTTCAGACTGagcaaaaaattaatattact
tcaaagtctcaacttctctagatcaaaagttatgggcatACTTGTGGTga
aaaaaggtgtttaattttgcataaattatgcagattgtggagaaattccc
tgttttccatcagtttttgaccacaaaaacgcccataacttttgatctag
agaagttgagactttgatgtaatattttttttctgctcagcctgaagagc
tctatcacgtgatATAGgtcccccaaaaatcatgaattttcaggcattgc
aattttgcctggaaaagcaaaaaaatcgaaaattacgcaaaaactgcggg
tttgcaagcttggtaacattcaaattccaaatcagtaccctcaaattgac
caaaatcaattcTAAAAGCTTGGTcacggacattttgaaaaaaggtgAAA
CGTTTTGTTGGCACTGGCCATGGCCtaaaaggttttaattttttaaggtt
ttttaaggttttttaaggtttttagaGGTTTTTTGGAGGTTCttcaaagg
tttttaaaaggtttttttaatgtttttaaggTTTTCAAAAGGTTTTTTAT
AGGTTTTGCAAaggttttttaagcttttttgaaggctttttaaaggtttt
taaatgttttttatggctttttgaaggttttcaaaaaattttttaaaggt
ttttaatAGGTTCttcaaaggtttttaaaaggttttgtaaaggttttttt
aaaggtatttagaggttttttaaaagttttcaaagacTTCTAAAAGGTTT
Tagaaaaggttttttgaaggtttgttaaaggttttcaaaggttttttaaa
ggttctgcaaaggtttttaaaaggttcttcaaaggtttttaaacgatttt
ttgatgttttttgtaaggttttcaaaaaaaattttatgggttttgtaaag
gtttttttaagcttttttgaaggctttttaaaggtttttaaaggtttttt
atgGCTATTTGAaggttttcaaaaagttttttaaaggttttctatAGGTT
CTTCAAAGGCTTTTAAAAGGTTttgtaaaggtttttttaaaggtttttaa
aaaggtttttgaagttttttggaaggttttcaaaggtttttcaaaggttt
ttttaaggttatcaaaagtttttttgatgttttttaaggttttcaaaGGG
TTTTTTATAGGTTTTGTAAAGGTTTTTCAAAGCCTTTTTGAAggttttca
aaggttttttgaagGTTCTTAAAACGTTTTTATAGGTTTTGTATAGGTTT
TGTAAAggttttttaaagcttttttaaagcttttttaaaagggtttttaa
agggtttttaaaggttcttcaaaggtttttaaaagattttttgatgtttt
ttttaaggttttcaaaagtttttttatgggttttgtaaaggtttttttaa
gcttttttgaaggctttttaaaggtttttaaaggttttttataGGTTTTg
caaaggtttttttaagcttttttgaaggctttttaaaggtttttaaaggt
tttttatgGCTATTTGAaggttttcaaaaagttttttaaaggttttttat
aGGTTCTTCAAAGGcttttaaaaggtttttaaaggttattaaaagttttt
ttgatgttttttacgGTTTTCAAAGGGTTTTTTATAGGTTTTGTAAAGGT
TTTTCAAAGCCTTTTTGAaggtttttaaaggttttttgaaggttttttaa
tgttttttgaaggttcttaaaacgttttttataggttttgtaaaggtttt
ttaaagcttttttaaagcttttttaaaaggGTTTTTAAAGGGCTTTTAAA
GGGTTTTTAAAGGTTCTTCGaaggtttttaaaaagttttttataggtttt
taaaggtttttaaaggttttttcaaacgttttttcaaacgttttttcaaa
cgttttttaaactaaaattgcagACTTTTTCGTTTACTTGCCATAtatat
tattttgagacagacttaaTTTATTTTCACGATACTACCTACAAACaagt
ttttctaattttgattttatttattaGTGGAAGATGGCTTTTATGGCGCT
AAAATTAACGGCACGTGGAATGGAATGGTCAGTGACGTCGTTCAAAATAa
agctgacgtcatcattgcGCCCTTCTTAATGACACGGGACCGACTTTTAG
CTTTAGACTTCACAGACGAATCATATTTAAATGGTGGAATGGCACTAGTA
ACCGTCGCACAGAAATCTAACATGACCCTTTTCAATTTTCGAACCTTCCA
GCCTCTATCTGCATCAATGTGGTTTGTTTTGTTATCCTTGACTTTAGNAT
TCCAGCCTCTATCCGCTTCAATGTGGTTTGTTTTGTTATCCTTGACTTTA
GCGGCTAGTTTGATTGTATATTTTGCTGAGAAGTTGTCTATCAAAACACC
TGTGTACCCACTATGGGAGAGTGTCAACTATTTCACTGGATTGGCTTTTG
CCCGTGATATTGGTGCATTGAATCCAGTGAAATTGGGTTCGAGAGTGATT
GGAATTAGTGTAGCTTTGTTTATGCTGATTGTCATGTCAACCTACACTGC
TGT

Coding sequence (CDS) from alignment at sc0000254:32037..37239+

>TCONS_00016911 ID=TCONS_00016911|Name=TCONS_00016911|organism=Clytia hemisphaerica|type=CDS|length=5928bp|location=Sequence derived from alignment at sc0000254:32037..37239+ (Clytia hemisphaerica)
CTTATCGAGCGATGTTTTGTAAAATGTATTACGCCCAGCACGCCCTTGAT
ATGCAGGAGTAGTAAGGGCGGCAACTTGAACGAATTGGTAGACTGTTTGA
GAGGGACTGGAGATGAATCACGTGATCAAATTGAAAACCATCTACCAAAT
AAGAAGCTTGACCAGACCAGCCAAGAGGACTTACAAATATTGCACCAGTC
ATCTTGTGATATTCATAAATTTATCCAACTTTTTCATCAACCGTACATTT
TACTGACCCAACCCGATGTTTCCCCGATATGGTGTCCAGCAGCAAACGAT
TATCAAATTCATGAAATCCGAAATACAAAAATCGGTGAAATCGGGAAACA
CTTGCAATATTTGAAATCAACTGGAATCaagatttttgtttgtttattgc
cAATGGTGACGACACTAAATGTTATACACGCAGCTCACATTGTCGAGGTT
TCGAGCGATGACTATTTGTGGATTTTGCTGGAAAAcgaaatttcgaaatt
tgatgTTGAATTTGAACCGATCAATGTGTTTTATTTGCAAACAAAGAACG
AAAGTTTTTGTCCAATGTCCAAGTCATCAGAATTGCAAACTCAATCTGta
ttgacaatcaaacaaaaatcgAAAGATCATCCAACAAGATCCACATTACA
AACCATTGGAAAATTCTctgaaaacaaaattgaaaaatcagaTGAGTTGA
TTCGATACACGACTAATTTTCGTccacaattttttatcaaatatccTCAA
ATTCGAATAGTTACTGCAATCGATCCTCCATTCGTATCCTCCATTCCGTT
ATACAATGAGAAATGTCATGGTCGCAAATGTATGAAATatgtgaaaaatc
tacaaacgggagataggaaagtagaaaccTTTTGTTGTGTTGGTTTGTGT
ATTGATATGATGTCATATTTGGAAACTGATATGAAAGCACAGTTTGAAAT
TTGGCTTGTGGAAGATGGCTTTTATGGCGCTAAAATTAACGGCACGTGGA
ATGGAATGGTCAGTGACGTCGTTCAAAATAaagctgacgtcatcattgcG
CCCTTCTTAATGACACGGGACCGACTTTTAGCTTTAGACTTCACAGACGA
ATCATATTTAAATGGTGGAATGGCACTAGTAACCGTCGCACAGAAATCTA
ACATGACCCTTTTCAATTTTCGAACCTTCCAGCCTCTATCTGCATCAATG
TGGTTTGTTTTGTTATCCTTGACTTTAGNATTCCAGCCTCTATCCGCTTC
AATGTGGTTTGTTTTGTTATCCTTGACTTTAGCGGCTAGTTTGATTGTAT
ATTTTGCTGAGAAGTTGTCTATCAAAACACCTGTGTACCCACTATGGGAG
AGTGTCAACTATTTCACTGGATTGGCTTTTGCCCGTGATATTGGTGCATT
GAATCCAGTGAAATTGGGTTCGAGAGTGATTGGAATTAGTGTAGCTTTGT
TTATGCTGATTGTCATGTCAACCTACACTGCTCTTATCGAGCGATGTTTT
GTAAAATGTATTACGCCCAGCACGCCCTTGATATGCAGGAGTAGTAAGGG
CGGCAACTTGAACGAATTGGTAGACTGTTTGAGAGGGACTGGAGATGAAT
CACGTGATCAAATTGAAAACCATCTACCAAATAAGAAGCTTGACCAGACC
AGCCAAGAGGACTTACAAATATTGCACCAGTCATCTTGTGATATTCATAA
ATTTATCCAACTTTTTCATCAACCGTACATTTTACTGACCCAACCCGATG
TTTCCCCGATATGGTGTCCAGCAGCAAACGATTATCAAATTCATGAAATC
CGAAATACAAAAATCGGTGAAATCGGGAAACACTTGCAATATTTGAAATC
AACTGGAATCaagatttttgtttgtttattgccAATGGTGACGACACTAA
ATGTTATACACGCAGCTCACATTGTCGAGGTTTCGAGCGATGACTATTTG
TGGATTTTGCTGGAAAAcgaaatttcgaaatttgatgTTGAATTTGAACC
GATCAATGTGTTTTATTTGCAAACAAAGAACGAAAGTTTTTGTCCAATGT
CCAAGTCATCAGAATTGCAAACTCAATCTGtattgacaatcaaacaaaaa
tcgAAAGATCATCCAACAAGATCCACATTACAAACCATTGGAAAATTCTc
tgaaaacaaaattgaaaaatcagaTGAGTTGATTCGATACACGACTAATT
TTCGTccacaattttttatcaaatatccTCAAATTCGAATAGTTACTGCA
ATCGATCCTCCATTCGTATCCTCCATTCCGTTATACAATGAGAAATGTCA
TGGTCGCAAATGTATGAAATatgtgaaaaatctacaaacgggagatagga
aagtagaaaccTTTTGTTGTGTTGGTTTGTGTATTGATATGATGTCATAT
TTGGAAACTGATATGAAAGCACAGTTTGAAATTTGGCTTGTGGAAGATGG
CTTTTATGGCGCTAAAATTAACGGCACGTGGAATGGAATGGTCAGTGACG
TCGTTCAAAATAaagctgacgtcatcattgcGCCCTTCTTAATGACACGG
GACCGACTTTTAGCTTTAGACTTCACAGACGAATCATATTTAAATGGTGG
AATGGCACTAGTAACCGTCGCACAGAAATCTAACATGACCCTTTTCAATT
TTCGAACCTTCCAGCCTCTATCTGCATCAATGTGGTTTGTTTTGTTATCC
TTGACTTTAGNATTCCAGCCTCTATCCGCTTCAATGTGGTTTGTTTTGTT
ATCCTTGACTTTAGCGGCTAGTTTGATTGTATATTTTGCTGAGAAGTTGT
CTATCAAAACACCTGTGTACCCACTATGGGAGAGTGTCAACTATTTCACT
GGATTGGCTTTTGCCCGTGATATTGGTGCATTGAATCCAGTGAAATTGGG
TTCGAGAGTGATTGGAATTAGTGTAGCTTTGTTTATGCTGATTGTCATGT
CAACCTACACTGCTCTTATCGAGCGATGTTTTGTAAAATGTATTACGCCC
AGCACGCCCTTGATATGCAGGAGTAGTAAGGGCGGCAACTTGAACGAATT
GGTAGACTGTTTGAGAGGGACTGGAGATGAATCACGTGATCAAATTGAAA
ACCATCTACCAAATAAGAAGCTTGACCAGACCAGCCAAGAGGACTTACAA
ATATTGCACCAGTCATCTTGTGATATTCATAAATTTATCCAACTTTTTCA
TCAACCGTACATTTTACTGACCCAACCCGATGTTTCCCCGATATGGTGTC
CAGCAGCAAACGATTATCAAATTCATGAAATCCGAAATACAAAAATCGGT
GAAATCGGGAAACACTTGCAATATTTGAAATCAACTGGAATCaagatttt
tgtttgtttattgccAATGGTGACGACACTAAATGTTATACACGCAGCTC
ACATTGTCGAGGTTTCGAGCGATGACTATTTGTGGATTTTGCTGGAAAAc
gaaatttcgaaatttgatgTTGAATTTGAACCGATCAATGTGTTTTATTT
GCAAACAAAGAACGAAAGTTTTTGTCCAATGTCCAAGTCATCAGAATTGC
AAACTCAATCTGtattgacaatcaaacaaaaatcgAAAGATCATCCAACA
AGATCCACATTACAAACCATTGGAAAATTCTctgaaaacaaaattgaaaa
atcagaTGAGTTGATTCGATACACGACTAATTTTCGTccacaatttttta
tcaaatatccTCAAATTCGAATAGTTACTGCAATCGATCCTCCATTCGTA
TCCTCCATTCCGTTATACAATGAGAAATGTCATGGTCGCAAATGTATGAA
ATatgtgaaaaatctacaaacgggagataggaaagtagaaaccTTTTGTT
GTGTTGGTTTGTGTATTGATATGATGTCATATTTGGAAACTGATATGAAA
GCACAGTTTGAAATTTGGCTTGTGGAAGATGGCTTTTATGGCGCTAAAAT
TAACGGCACGTGGAATGGAATGGTCAGTGACGTCGTTCAAAATAaagctg
acgtcatcattgcGCCCTTCTTAATGACACGGGACCGACTTTTAGCTTTA
GACTTCACAGACGAATCATATTTAAATGGTGGAATGGCACTAGTAACCGT
CGCACAGAAATCTAACATGACCCTTTTCAATTTTCGAACCTTCCAGCCTC
TATCTGCATCAATGTGGTTTGTTTTGTTATCCTTGACTTTAGNATTCCAG
CCTCTATCCGCTTCAATGTGGTTTGTTTTGTTATCCTTGACTTTAGCGGC
TAGTTTGATTGTATATTTTGCTGAGAAGTTGTCTATCAAAACACCTGTGT
ACCCACTATGGGAGAGTGTCAACTATTTCACTGGATTGGCTTTTGCCCGT
GATATTGGTGCATTGAATCCAGTGAAATTGGGTTCGAGAGTGATTGGAAT
TAGTGTAGCTTTGTTTATGCTGATTGTCATGTCAACCTACACTGCTCTTA
TCGAGCGATGTTTTGTAAAATGTATTACGCCCAGCACGCCCTTGATATGC
AGGAGTAGTAAGGGCGGCAACTTGAACGAATTGGTAGACTGTTTGAGAGG
GACTGGAGATGAATCACGTGATCAAATTGAAAACCATCTACCAAATAAGA
AGCTTGACCAGACCAGCCAAGAGGACTTACAAATATTGCACCAGTCATCT
TGTGATATTCATAAATTTATCCAACTTTTTCATCAACCGTACATTTTACT
GACCCAACCCGATGTTTCCCCGATATGGTGTCCAGCAGCAAACGATTATC
AAATTCATGAAATCCGAAATACAAAAATCGGTGAAATCGGGAAACACTTG
CAATATTTGAAATCAACTGGAATCaagatttttgtttgtttattgccAAT
GGTGACGACACTAAATGTTATACACGCAGCTCACATTGTCGAGGTTTCGA
GCGATGACTATTTGTGGATTTTGCTGGAAAAcgaaatttcgaaatttgat
gTTGAATTTGAACCGATCAATGTGTTTTATTTGCAAACAAAGAACGAAAG
TTTTTGTCCAATGTCCAAGTCATCAGAATTGCAAACTCAATCTGtattga
caatcaaacaaaaatcgAAAGATCATCCAACAAGATCCACATTACAAACC
ATTGGAAAATTCTctgaaaacaaaattgaaaaatcagaTGAGTTGATTCG
ATACACGACTAATTTTCGTccacaattttttatcaaatatccTCAAATTC
GAATAGTTACTGCAATCGATCCTCCATTCGTATCCTCCATTCCGTTATAC
AATGAGAAATGTCATGGTCGCAAATGTATGAAATatgtgaaaaatctaca
aacgggagataggaaagtagaaaccTTTTGTTGTGTTGGTTTGTGTATTG
ATATGATGTCATATTTGGAAACTGATATGAAAGCACAGTTTGAAATTTGG
CTTGTGGAAGATGGCTTTTATGGCGCTAAAATTAACGGCACGTGGAATGG
AATGGTCAGTGACGTCGTTCAAAATAaagctgacgtcatcattgcGCCCT
TCTTAATGACACGGGACCGACTTTTAGCTTTAGACTTCACAGACGAATCA
TATTTAAATGGTGGAATGGCACTAGTAACCGTCGCACAGAAATCTAACAT
GACCCTTTTCAATTTTCGAACCTTCCAGCCTCTATCTGCATCAATGTGGT
TTGTTTTGTTATCCTTGACTTTAGNATTCCAGCCTCTATCCGCTTCAATG
TGGTTTGTTTTGTTATCCTTGACTTTAGCGGCTAGTTTGATTGTATATTT
TGCTGAGAAGTTGTCTATCAAAACACCTGTGTACCCACTATGGGAGAGTG
TCAACTATTTCACTGGATTGGCTTTTGCCCGTGATATTGGTGCATTGAAT
CCAGTGAAATTGGGTTCGAGAGTGATTGGAATTAGTGTAGCTTTGTTTAT
GCTGATTGTCATGTCAACCTACACTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009471XLOC_009471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016911-exon-sc0000254-1491911889:32037..32192TCONS_00016911-exon-sc0000254-1491911889:32037..32192Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1510915933:32037..32192TCONS_00016911-exon-sc0000254-1510915933:32037..32192Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1575043694:32037..32192TCONS_00016911-exon-sc0000254-1575043694:32037..32192Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1491911889:32603..33012TCONS_00016911-exon-sc0000254-1491911889:32603..33012Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1510915933:32603..33012TCONS_00016911-exon-sc0000254-1510915933:32603..33012Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1575043694:32603..33012TCONS_00016911-exon-sc0000254-1575043694:32603..33012Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1491911889:33405..33796TCONS_00016911-exon-sc0000254-1491911889:33405..33796Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1510915933:33405..33796TCONS_00016911-exon-sc0000254-1510915933:33405..33796Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1575043694:33405..33796TCONS_00016911-exon-sc0000254-1575043694:33405..33796Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1491911889:36714..37239TCONS_00016911-exon-sc0000254-1491911889:36714..37239Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1510915933:36714..37239TCONS_00016911-exon-sc0000254-1510915933:36714..37239Clytia hemisphaericaexon
TCONS_00016911-exon-sc0000254-1575043694:36714..37239TCONS_00016911-exon-sc0000254-1575043694:36714..37239Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016911-proteinTCONS_00016911-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:32037..37239 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639991	0.732629	0.409574	0.27741	0.0375245	0.0296524	0.0357743	0.0334915	0	0	0	0.0926587	0.610698	0.595778	0.0158003	0.0169562	0.0626659	0.128461	1.80434	2.01192	0.107614	0	0.255235	0.0870171	0.239002	0.133315	0.114464	0.122159	0	0.0943988
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00016911 vs. Swiss-Prot (Human)
Match: NMDE1 (Glutamate receptor ionotropic, NMDA 2A OS=Homo sapiens GN=GRIN2A PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.294e-19
Identity = 64/250 (25.60%), Postives = 122/250 (48.80%), Query Frame = 1 
Query:  748 QIRIVTAIDPPFV--SSIPLYNEKC--HGRKCMKYVK-NLQTGDRKVETFCCVGLCIDMMSYLETDMKAQFEIWLVEDGFYGAKINGTWNGMVSDVVQNKADVIIAPFLMTRDRLLALDFTDESYLNGGMALVTVAQKSNMTLFNFRTFQPLSASMWFVLLSLTLXFQPLSASMWFVLLSLTLAASLIVYFAEKLSIKTPVYPLWESVNYFTGLAFARDIGALNPVKLGSRVIGISVALFMLIVMSTYTA 1482
             + IVT  + PFV    I    E C  +   C K+VK N  T +      CC G CID++  L   +K  ++++LV +G +G K+N  WNGM+ +VV  +A + +    +  +R   +DF+   ++  G+++  +  +SN T+      +P SAS+W ++  + L    ++  ++     +    +L    A+  +   P + + +++    GL F   +   NP    S+++    A F +I +++YTA
Sbjct:  405 HLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFS-VPFVETGISV--MVSRSNGTVSPSAFLEPFSASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNL----AKGKAPHGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTA 647
The following BLAST results are available for this feature:
BLAST of TCONS_00016911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE13.294e-1925.60Glutamate receptor ionotropic, NMDA 2A OS=Homo sap... [more]
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