TCONS_00016732 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016732
Unique Name	TCONS_00016732
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	969

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000248:303704..307327+
coding sequence from alignment at sc0000248:303704..307327+

transcript sequence

>TCONS_00016732 ID=TCONS_00016732|Name=TCONS_00016732|organism=Clytia hemisphaerica|type=transcript|length=969bp
TTCAGAAATATTAAACATTTCTtaacacaaaaaaattcaatatttacaaA
CGAAAAATCGCTAAACTGGAATCCTCTTACTCATTACAATCTTTCCCAAG
TGATGCACCCCGAAGACAGCATGGACTGACCAACTCTAATTTTTCAAACG
GTCTAAAGAAAAATAGTTTTGATGCTAGTTCTTCACCCAGGCATACATCG
GaaaatggaataaaaagattttcaaatcgAGTGAACAATCAAACTGGTTT
TGAACCAAAGAAAAGAGATTCAACTCAGAAACCAAAGAGATGGGTTCCTT
CTCAATTGATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGG
GTCAGAGGCATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAG
CTACAACCTTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAA
TTATCTTAATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTG
TATGCTCAACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGA
CCCTGTCACCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCC
AAGAAGAATTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAG
GACACGGACCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaag
aaaaatgttgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAAC
TGTTACAAGAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAG
AAAAAGCGAACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTG
TCAAATAATGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTG
CCTGGTGACATTAGCTGGCCAACGAAGAAATTTTCTCATATTTTGCACCT
TCCAGGCACCATCAAAcgc

Run BLAST on NCBI

protein sequence of TCONS_00016732-protein

>TCONS_00016732-protein ID=TCONS_00016732-protein|Name=TCONS_00016732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MHDVTDRNELIFRRVRGILNKLTPDNFDKLSYNLLNIGIDKTVLKGIIIL
IYEKAIDESKYCNLYAQLCLRLRHDVPNFDDPVTKTNTFVRLLLSKCQEE
FETRSKASSAFDKKDTDLSPDEKQDKMVAKRKMLGNIKFIGELGKLELLQ
EAILHKCIQQLLAKKKRTSLSEMAEDIECMCQIMSTIXKPKFSGTIVAW

Run BLAST on NCBI

transcript from alignment at sc0000248:303704..307327+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016732 ID=TCONS_00016732|Name=TCONS_00016732|organism=Clytia hemisphaerica|type=transcript|length=3624bp|location=Sequence derived from alignment at sc0000248:303704..307327+ (Clytia hemisphaerica)
TTCAGAAATATTAAACATTTCTtaacacaaaaaaattcaatatttacaaA
CGAAAAATCGCTAAACTGGAATCCTCTTACTCATTACAATCTTTCCCAAG
TGATGCACCCCGAAGACAGCATGGACTGACCAACTCTAATTTTTCAAACG
GTCTAAAGAAAAATAGgttagtattttttttgttatttactTACCATGAT
AAAAACAACAAATGTGTAAACCCCTCGtttaaacttttcaactttCCTAT
TTTCAATTGTTATTATAGTTTTGATGCTAGTTCTTCACCCAGGCATACAT
CGGaaaatggaataaaaagattttcaaatcgAGTGAACAATCAAACTGGT
TTTGAACCAAAGAAAAGAGATTCAACTCAGAAACCAAAGAGATGGGTTCC
TTCTCAATTGATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCA
GGGTCAGAGGGTAAGTTTTTAACAAAATGTtatcaacttcagttgagcta
gaatctgactatatctgtatgtatgtatgtatgtatgtatgtatgtatgt
atgtatgtatgtatgtgcGTCTCTCTGTCTGAAAACTTGAGGGCAGTCTG
CAGTCATAAAAAATCGTCCGTTTTgcctgaaatttggcacacttgttcgc
tccttgggtgaatattttagggtgttttttcatttttcaaaaattttgat
ttttgggctATGATGAGTTAAACGTGGCTAAACCTTGAGGGCCTTTTAGA
CTGATCAAACTTAGCttatcaattttacaattgggcctccACACAATGCA
AATATTCCTGAATCTCGGTTGAGCTCTTTTTCCACTATCAACAGTTTTAT
TAAAACCATGACGTTTATAAAGGCATTCAgatgttttttatcttttcgaA
TTAATGGTCTTCTGTAAATGGTGGTTTATTGTTTATGGTTATTTATTATT
AGCTGATGTCGTATTTCATGTTGTTTTTCAGCATATTGAATAAGCTGACA
CCTGATAACTTTGACAAGTTAAGCTACAACCTTCTGAATATTGGAATTGA
CAAGACTGTTTTGAAAGGAATAATTATCTTAGTGAGTTTCCTTTGTATTT
gattttcacttaaaattcTTGGGATAATCCATGTAATATGTACGCAGAAC
TTTTCCTTATATTTGACACCCTTGTACGCAAGAAATAACaccatttaaac
aatagatgtgcGCTTTTGCTAAACTCCCTCTTCCCCATTCATTGCTGAta
ttgcgtacgtactataaaGATAGCCCTTGACTTGGGTGGACTCATATTTT
AGCCTGTTTTGATTGGATAAAGTATGATAAAAACAATGATTTATGCTACG
GTCAACATAAAGTAGTTTTTTAAACAGCAGTGGTTCAtcagaaatttgat
ttgaaCGCTTCAATATAAAGAAGATTTTGTGAAAATTCAAAGGGCAATTG
AATTTGGTTAGAAACCTATCAAGAAAAGTTTGATTTAATGCTACATTGAT
TTCATTTCAGATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACT
TGTATGCTCAACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGAT
GACCCTGTCACCAAAACAAACGTAAGCGTTGATTGCTaatttattttgtg
atttttgttgGTGTGATACTTTTTAACTTAACTTTATTAACTGATCTTTC
TCAAGTTTAACATTAACATATCACTTTGTGTAAAGTCTCGTAGAATCGTT
ATCAACTTTACTATATTGATTAGCTAAGGTCTTAAAAATCAGTTGTCAAA
GTTATCATATGCTTTATACTCGTTGATTTGAATTTGATGTTTACCATATT
CCTGAGGCTAATCTTGTCCAATCTCATCTTGTCTCAAGAGTTGACTTTAC
CTAATTCGAATTTGAACGAGGAATTCTATTTGTTCGAGTTACTgagagat
tcaaattatagaaagtattttgagAGGGTTACTTCTTGATGGAgactgga
aacaagttcgaattaatATATTAAGGTTCAAatgatagaagttcgaataa
gcgagagtttacTGCAGTGTAGGATTTTAAATTAAAACCTTTTTGATTCT
TGTccaattaatttaattttcctATCATAGACCTTTGTGCGGCTGCTGCT
CAGCAAATGCCAAGAAGAATTCGAGACAAGATCTAAAGCCTCTTCTGCTT
TCGACAAAAAGGACACGGACCTTTCTCCCGATGAGAAACAGGATAAAATG
gtggcaaaaagaaaaatgttgggAAATATTAAGTTCATCGGTACGCTTTT
TATAAGANAGTAAGAAGAAGACGCACAATATCAAAGTTAAATAGTCCTGC
TGCTGAGGTcgataaatgtttcatttcgtgacacacatcttagaagtaac
tttttttggtggaaactcgcgaattagtatatttagattccaaaatcaaa
aagttaacgaataattgatttttgggggtcttcaaattaaaaaaagacct
atatcacatgatagagctcttcaaactgagcaaaagagtgtattacacca
aagtcccaacttctctagatcaaaagttatgggcctatttgtggtcaaga
actgatggaaaacagggaatttccccataatcggcattaatttatgcaaa
attaaacacctttttgaccacaaaataATAGGCCTgaatgaatttccagg
ccttgcaattttgcctggaaacgcaaaaaatcgccaattactcgttactt
gcacgataatatcgtggaaactttttgattttggaatctacatatactaa
ttcgtgagtttccaccaaaaaaagttagttctaagatgtgtgtcacgaaa
attgttttttagccacttttttcgatctcagcagcgggacttAAAGTCTA
GAACTTTTAATAAGGCaatatacatttttttttgttaatttacaggAGAA
CTTGGTAAGCTTGAACTGTTACAAGAAGCAATTCTACACAAATGTATTCA
ACAGGTGAGAAAAAAATTAGTGTTTTTTCTGGACGAGGTTTAAAAATCGT
CCAATAAATCTCAAATGTAGCAAAATTTAATTAGATAATCGGCCAATTTT
ATGCCGGCTCTTATTGCGCCAAAGCTcattctttttcagtttttagcCAT
GCCCTAATTTAATTCCGATCCCTTACGTCGGCTACGCCAGCAACGATAAA
ATAACACCAATAAGAACTGGCGTAGAAACAGCCAATATGGTAATCTGGAT
GATTAAATTAACCTCTTTGGTACATTTGACTCTCCGTCATAGATATAAAT
TCGAACATCGAATTGATCATGTAAAATCTTTATTATCTAATTATCAATGT
ACTTTCTTCCGAATCAAATAATGTACCATTGTTAGTCCTATAGTAGATCA
AAGTAGTTTCTAAACTAAATAATACTTTTATACAATACTCTAGTTGCTGG
CTAAGAAAAAGCGAACATCATTGTCTGAGATGGCAGAGGATATCGAATGT
ATGTGTCAAATAATGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAAT
TGTTGCCTGGTGACATTAGCTGGCCAACGAAGAAATTTTCTCATATTTTG
CACCTTCCAGGCACCATCAAAcgc

Coding sequence (CDS) from alignment at sc0000248:303704..307327+

>TCONS_00016732 ID=TCONS_00016732|Name=TCONS_00016732|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at sc0000248:303704..307327+ (Clytia hemisphaerica)
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA
ATGCACGATGTTACAGATCGCAATGAATTGATTTTCCGCAGGGTCAGAGG
CATATTGAATAAGCTGACACCTGATAACTTTGACAAGTTAAGCTACAACC
TTCTGAATATTGGAATTGACAAGACTGTTTTGAAAGGAATAATTATCTTA
ATTTATGAAAAAGCTATAGACGAGTCCAAGTACTGTAACTTGTATGCTCA
ACTTTGTTTACGATTACGCCACGATGTACCCAATTTTGATGACCCTGTCA
CCAAAACAAACACCTTTGTGCGGCTGCTGCTCAGCAAATGCCAAGAAGAA
TTCGAGACAAGATCTAAAGCCTCTTCTGCTTTCGACAAAAAGGACACGGA
CCTTTCTCCCGATGAGAAACAGGATAAAATGgtggcaaaaagaaaaatgt
tgggAAATATTAAGTTCATCGgAGAACTTGGTAAGCTTGAACTGTTACAA
GAAGCAATTCTACACAAATGTATTCAACAGTTGCTGGCTAAGAAAAAGCG
AACATCATTGTCTGAGATGGCAGAGGATATCGAATGTATGTGTCAAATAA
TGTCAACCATTGGNAAGCCAAAATTTTCGGGGACAATTGTTGCCTGGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009355	XLOC_009355	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016732-protein	TCONS_00016732-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000248	supercontig	sc0000248:303704..307327 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
121.885	115.352	123.31	119.709	168.271	127.299	95.0055	102.709	72.8528	88.4859	77.7519	77.4127	58.9257	66.5793	62.1063	64.0609	75.5887	85.5576	59.8952	69.3227	68.9649	72.0545	65.9413	71.3855	80.492	75.4604	72.4585	75.8951	81.3457	87.3126

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003890	MIF4G-like_typ-3
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0005488	binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

Blast

[Close]

BLAST of TCONS_00016732 vs. Swiss-Prot (Human)
Match: IF4G2 (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.510e-65
Identity = 112/218 (51.38%), Postives = 155/218 (71.10%), Query Frame = 3

Query:  276 QKPKRWVPSQLMH-----------DVTDRNELIFRRVRGILNKLTPDNFDKLSYNLLNIGID-KTVLKGIIILIYEKAIDESKYCNLYAQLCLRLRHDVPNFDDPVT-------KTNTFVRLLLSKCQEEFETRSKASSAFDKKDTDLSPDEKQDKMVAKRKMLGNIKFIGELGKLELLQEAILHKCIQQLLAKKKRTSLSEMAEDIECMCQIMSTIG 872
            Q  ++W+P++              +  +R++ IFR+VRGILNKLTP+ FDKL   LLN+G++ K +LKG+I+LI +KA++E KY +LYAQLCLRL  D PNFD P         ++ TF RLL+SK Q+EFE R++    +DK++  L P+E++ + +AK KMLGNIKFIGELGKL+L+ E+ILHKCI+ LL KKKR  L +M ED+EC+CQIM T+G
Sbjct:   45 QNAQKWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVG 262

The following BLAST results are available for this feature:

BLAST of TCONS_00016732 vs. Swiss-Prot (Human)

BLAST of TCONS_00016732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IF4G2	5.510e-65	51.38	Eukaryotic translation initiation factor 4 gamma 2...	[more]

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TCONS_00016732 (transcript) - C. hemisphaerica