|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015269 ID=TCONS_00015269|Name=TCONS_00015269|organism=Clytia hemisphaerica|type=transcript|length=549bp
atttaaatcaatttcaaaCCAGTGAAGAATCGAAAAGAGGAAAGTGGTCA
AACTGTACACGAAAGATGTTTCAATTAGCGTTTGTTGTGAGCTTGTTCAT
TCTAGCTGCATCAGCGAATGATTGTGAAAAAAGCACATACGAAAAGCTTG
GATGTTTCAAACGACAACCAAAACTGTTACCAGATTTAATCCTTAACGAT
CGTGATCCTACACATGATAATTACACTGGAAGAAATATTGATTGGGTTGA
ATATGCAAGCTACTTGAATGAATTTACATGCCGTTGTTCAGACAAAGCCA
AGAAGATGGGTTATAAATACTTCGCCCTTGGTTTCTACGGTGAATGCTGG
GCTGGAAAAGATATGAAAGAATTCGTCAAAGTTATGAACGACTTTTCTCA
AGGTTCAATGAAATGTATTAATGGTAATTACTGGGCTTGCGACAATATGA
CGACTTCACCTTGCACTGGAGGCGCCAATACTGAATATATTTATTTAGTA
GTAGGAGATgatgaagaaggagaagaataAATCTTATTTTAATGCAACT Run BLAST on NCBI protein sequence of TCONS_00015269-protein >TCONS_00015269-protein ID=TCONS_00015269-protein|Name=TCONS_00015269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
LNQFQTSEESKRGKWSNCTRKMFQLAFVVSLFILAASANDCEKSTYEKLG
CFKRQPKLLPDLILNDRDPTHDNYTGRNIDWVEYASYLNEFTCRCSDKAK
KMGYKYFALGFYGECWAGKDMKEFVKVMNDFSQGSMKCINGNYWACDNMT
TSPCTGGANTEYIYLVVGDDEEGEE Run BLAST on NCBI transcript from alignment at sc0000208:273487..275685+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015269 ID=TCONS_00015269|Name=TCONS_00015269|organism=Clytia hemisphaerica|type=transcript|length=2199bp|location=Sequence derived from alignment at sc0000208:273487..275685+ (Clytia hemisphaerica)
atttaaatcaatttcaaaCCAGTGAAGAATCGAAAAGAGGAAAGTGGTCA
AACTGTACACGAAAGATGTTTCAATTAGCGTTTGTTGTGAGCTTGTTCAT
TCTAGCTGCATCAGGTGAGatttatttgaatatttctatattttatcTAT
AAGATGGATATATCTTTTTAGTAGAGGATGAGTAGAAGCACAAATACAGA
AATACAGAGTACCCTTTATAAGTTAGGGCCAATTAAATATATGGTGTATT
TTCACAGTTTCGCTGTAAGCATTTGTTCCTCAATTTATCCCTAAGCGATT
TCGATCTATCATTTATTTAGTACACATAAAATTGGGCATTGGACACTCGT
CGAAATCAAATCCTTAAAAATGAGTCTTATTGATCTACTTTAGCTATCTT
ATCGGCCCTTtctacaccggcccttattagcgttatttttgagctcgtgg
cgtaataagggccggcgttaaaagggccaagattatgcaattttaactta
aaagcggcgttaaatttttatcattatttctcaatttaaagaattttaga
tATGATTCGAAGACGAACATTATCccttgttttactccatatttaaaact
tcagtgaaatattaaatcagtgattttcgatggaattttcaacaatttaa
tgctgaaaaatgatattttaatgtaaatctTAGCCATTATTTACCAATTG
AAGCATAAGTagtcatttttacaaattttggcgttatcaACGGCCCAAAA
TTGGCCTCTGGCGTAATatgggccggcgtaaaaagggctgataaggTATG
GAAATACCAGATTATACCATTACCAATAATTTCAAACGAATACCCCCTCC
CAGTCCCGATAAGGAAGTTGCatatacgctttttttataagaacatccag
actttttgaagccttaggatgttcttaactttttgagttttaagcttcct
aacatgtttttatttttgccattttttagtatttttgtccaaatttgttg
ttctagagcccgcaaagtcttaaaatgttgttaacttgttcttaacattt
tggtcatcgaagcctgatattcttaaatagtttgttcttaaaaaaaagca
aaagggTAGTTTACCTTCCTATCGTTTTTACTTTGCCTCTCTCATTCTAA
GTATACATTTACTTCCTTATAATAGCGAATGATTGTGAAAAAAGCACATA
CGAAAAGCTTGGATGTTTCAAACGACAACCAAAACTGTTACCAGATTTAA
TCCTTAACGATCGTGATCCTACACATGATAATTACACTGGAAGAAATATT
GATTGGGTTGAATATGCAAGCTACTTGAATGAGTGAGTATTATTGATTAC
AGATTACTGTAAAGCCCGAAAGGGCTAGATATTGTGCTTtcagctcttcc
aagcaaaaaaagtgaatatcacaaaaaatattgctggcattgttttcaaa
aacccgcgaagcttattacaagcgctgaaattctattgtaatgtcattTG
ATCTAGGtaagatttcctacctaacctcggcacacttttcagccaatgCA
CGACATCTGGCCTTTTGGGTTTTATGAATTTATGGACGAAACCTCTCAAT
CAGGGAACAGGTAAGTATGATTTCCTCCATGCTCAAGTTGAAACGCTTAG
CGCTGTCCAGATATTCCTAGTTCTTTTCACGCGACACACAGTTACTACTG
GTGCATATATAACGATGACACTTGCTCTTGCATAGTGCTCTTCACGATCG
TAGAACAATAACGCACCGATATTTAGAGCTTTAACTTGATGGGAAAATCA
ATCTACATCATTTGCCAgatagattttgaaattggtaATCATCCCGGAGG
GTCTCCTCCCAACTGGAAATCGATTACAATCCTCATGAAAACCATAGTTT
ATATTTCATAATTGGTTTTAGATTTACATGCCGTTGTTCAGACAAAGCCA
AGAAGATGGGTTATAAATACTTCGCCCTTGGTTTCTACGGTGAATGCTGG
GCTGGAAAAGATATGAAAGAATTCGTCAAAGTTATGAACGACTTTTCTCA
AGGTTCAATGAAATGTATTAATGGTAATTACTGGGCTTGCGACAATATGA
CGACTTCACCTTGCACTGGAGGCGCCAATACTGAATATATTTATTTAGTA
GTAGGAGATgatgaagaaggagaagaataAATCTTATTTTAATGCAACT Coding sequence (CDS) from alignment at sc0000208:273487..275685+ >TCONS_00015269 ID=TCONS_00015269|Name=TCONS_00015269|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000208:273487..275685+ (Clytia hemisphaerica)
ttaaatcaatttcaaaCCAGTGAAGAATCGAAAAGAGGAAAGTGGTCAAA
CTGTACACGAAAGATGTTTCAATTAGCGTTTGTTGTGAGCTTGTTCATTC
TAGCTGCATCAGCGAATGATTGTGAAAAAAGCACATACGAAAAGCTTGGA
TGTTTCAAACGACAACCAAAACTGTTACCAGATTTAATCCTTAACGATCG
TGATCCTACACATGATAATTACACTGGAAGAAATATTGATTGGGTTGAAT
ATGCAAGCTACTTGAATGAATTTACATGCCGTTGTTCAGACAAAGCCAAG
AAGATGGGTTATAAATACTTCGCCCTTGGTTTCTACGGTGAATGCTGGGC
TGGAAAAGATATGAAAGAATTCGTCAAAGTTATGAACGACTTTTCTCAAG
GTTCAATGAAATGTATTAATGGTAATTACTGGGCTTGCGACAATATGACG
ACTTCACCTTGCACTGGAGGCGCCAATACTGAATATATTTATTTAGTAGT
AGGAGATgatgaagaaggagaagaataAttaaatcaatttcaaaCCAGTG
AAGAATCGAAAAGAGGAAAGTGGTCAAACTGTACACGAAAGATGTTTCAA
TTAGCGTTTGTTGTGAGCTTGTTCATTCTAGCTGCATCAGCGAATGATTG
TGAAAAAAGCACATACGAAAAGCTTGGATGTTTCAAACGACAACCAAAAC
TGTTACCAGATTTAATCCTTAACGATCGTGATCCTACACATGATAATTAC
ACTGGAAGAAATATTGATTGGGTTGAATATGCAAGCTACTTGAATGAATT
TACATGCCGTTGTTCAGACAAAGCCAAGAAGATGGGTTATAAATACTTCG
CCCTTGGTTTCTACGGTGAATGCTGGGCTGGAAAAGATATGAAAGAATTC
GTCAAAGTTATGAACGACTTTTCTCAAGGTTCAATGAAATGTATTAATGG
TAATTACTGGGCTTGCGACAATATGACGACTTCACCTTGCACTGGAGGCG
CCAATACTGAATATATTTATTTAGTAGTAGGAGATgatgaagaaggagaa
gaataAttaaatcaatttcaaaCCAGTGAAGAATCGAAAAGAGGAAAGTG
GTCAAACTGTACACGAAAGATGTTTCAATTAGCGTTTGTTGTGAGCTTGT
TCATTCTAGCTGCATCAGCGAATGATTGTGAAAAAAGCACATACGAAAAG
CTTGGATGTTTCAAACGACAACCAAAACTGTTACCAGATTTAATCCTTAA
CGATCGTGATCCTACACATGATAATTACACTGGAAGAAATATTGATTGGG
TTGAATATGCAAGCTACTTGAATGAATTTACATGCCGTTGTTCAGACAAA
GCCAAGAAGATGGGTTATAAATACTTCGCCCTTGGTTTCTACGGTGAATG
CTGGGCTGGAAAAGATATGAAAGAATTCGTCAAAGTTATGAACGACTTTT
CTCAAGGTTCAATGAAATGTATTAATGGTAATTACTGGGCTTGCGACAAT
ATGACGACTTCACCTTGCACTGGAGGCGCCAATACTGAATATATTTATTT
AGTAGTAGGAGATgatgaagaaggagaagaataA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015269-exon-sc0000208-1491911889:273487..273600 | TCONS_00015269-exon-sc0000208-1491911889:273487..273600 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1510915933:273487..273600 | TCONS_00015269-exon-sc0000208-1510915933:273487..273600 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1575043694:273487..273600 | TCONS_00015269-exon-sc0000208-1575043694:273487..273600 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1491911889:274662..274818 | TCONS_00015269-exon-sc0000208-1491911889:274662..274818 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1510915933:274662..274818 | TCONS_00015269-exon-sc0000208-1510915933:274662..274818 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1575043694:274662..274818 | TCONS_00015269-exon-sc0000208-1575043694:274662..274818 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1491911889:275408..275685 | TCONS_00015269-exon-sc0000208-1491911889:275408..275685 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1510915933:275408..275685 | TCONS_00015269-exon-sc0000208-1510915933:275408..275685 | Clytia hemisphaerica | exon |
| TCONS_00015269-exon-sc0000208-1575043694:275408..275685 | TCONS_00015269-exon-sc0000208-1575043694:275408..275685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000208 | supercontig | sc0000208:273487..275685 + |
Blast
The following BLAST results are available for this feature:
|
