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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015062 ID=TCONS_00015062|Name=TCONS_00015062|organism=Clytia hemisphaerica|type=transcript|length=1419bp
ggtaaattataaaaaaaaacaaaaaaaaatggacCGCAGGACAAGTTGTT
TATTATTCCGCTGTGTGCGGCCACATCATTTCCTGGTGTTAATGGGAGCA
TTTACCATTCTCTCTTTCATTCTTGGTTATGCCATCTCTGTCTCATTAGA
CAAAGTAAATTATCTGTTCCCTTATATCAGTGATACTGGGACAACAACAC
CAGCAAGTTCTTATTTTGGATTATGTCTCAATCTGGCGTCAGTCTTTGCA
GCAATTTCAATGTATTTCAGACACAGCTTTCTTGAAAAACAAGAAGTTTT
AACGACAGTGCGATTACACATGTTAAATGATGTCACCTTACTTATCGGTG
GCTTCTCAGCATTTGGAATTATGCTGGTTGCTAATTTCCAGGAAACAAGC
GTTTTGACCATCCATTTGATTGGTGCTTTCATGACATTTGCTTTGGGTAA
TGTTTATTGTTGGATAAATACTTACATATCTCACGTTATTCGTAATGAAA
CTGGGAGCACGCAGGGTATGATTGCTTTGAGAGGAATCCTATCCGCCATT
TCTACTTTCACTTTCCTGTTGACAATGATTGGAGCATCAATGGCTAAAAA
CGAGTCTGGAAAAACAATCAATTTGCATTGGACTTCAGATCAGAAGgGCT
ACAAACTACATCTGATGAGTACATTTTCTGAATGGATAATGGGTATCAGT
TTTGTCATCTTCTTCTTGACGTTTGTCGGTGAATTCAGAAGGATGAAAGC
AACTCTGCCAATCGCTTTCAGCAACCATCAACAACGTATGCCGTTTGAAG
AAAATGTCAATGTGTAAACAAACTCCATTCATAGATCTCATTAttcattt
ttgggaaaattataGTTTGTTCTGGTATTAAAGCAACTATCTTAAAGGAA
TTTAACTTGGCGAATCAGggaaaaaactaattttgacgagaatttaattt
ggcggatgacggatttttaaataattgactaatttgaccaattttgacca
aatttcgatctttctgggggtaaaaagttgaaattttcctatttctccta
cCCTTAGTAGGACTGACACCCCCCCGGGGTGAAATCATTGATATCGGggg
taaattgtgaaaaatcggacataaaagaaaaaaattaaatttggtcggaa
cttaatttggcggatagacaaatccgccaaattttcttcccgccaaaatt
tcttcccttaaggtataacaCCTTTATACCAGAACAGTCTTTAGGATGAT
TATTTGATCATAAGGTACCTTTATACAGTACAGAGAAAACGTGTGCCTgg
aaatataaatgaaaatccACTGAATCTAAAGAAATGTTATTATTACAATA
AGTTTAACATTGTTTATTTgatcaatagatattcaattcccaagattaTT
TAATAGgtatttttgagaa Run BLAST on NCBI protein sequence of TCONS_00015062-protein >TCONS_00015062-protein ID=TCONS_00015062-protein|Name=TCONS_00015062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
VNYKKKQKKMDRRTSCLLFRCVRPHHFLVLMGAFTILSFILGYAISVSLD
KVNYLFPYISDTGTTTPASSYFGLCLNLASVFAAISMYFRHSFLEKQEVL
TTVRLHMLNDVTLLIGGFSAFGIMLVANFQETSVLTIHLIGAFMTFALGN
VYCWINTYISHVIRNETGSTQGMIALRGILSAISTFTFLLTMIGASMAKN
ESGKTINLHWTSDQKGYKLHLMSTFSEWIMGISFVIFFLTFVGEFRRMKA
TLPIAFSNHQQRMPFEENVNV Run BLAST on NCBI transcript from alignment at sc0000203:303845..305557- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015062 ID=TCONS_00015062|Name=TCONS_00015062|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000203:303845..305557- (Clytia hemisphaerica)
GGTAAATTATAAAAAAAAACAAAAAAAAATGGACCGCAGGACAAGTTGTT
TATTATTCCGCTGTGTGCGGCCACATCATTTCCTGGTGTTAATGGGAGCA
TTTACCATTCTCTCTTTCATTCTTGGTTATGCCATCTCTGTCTCATTAGA
CAAAGTAAATTATCTGTTCCCTTATATCAGTGATACTGGGACAACAACAC
CAGCAAGTTCTTATTTTGGATTATGTCTCAATCTGGCGTCAGTCTTTGCA
GCAATTTCAATGTATTTCAGACACAGCTTTCTTGAAAAACAAGAAGTTTT
AACGACAGTGCGATTACACATGTTAAATGATGTCACCTTACTTATCGGTG
GCTTCTCAGCATTTGGAATTATGCTGGTTGCTAATTTCCAGGAAACAAGC
GTTTTGACCATCCATTTGATTGGTGCTTTCATGACATTTGCTTTGGGTAA
TGTTTATTGTTGGATAAATACTTACATATCTCACGTTATTCGTAATGAAA
CTGGGAGCACGCAGGGTATGATTGCTTTGAGAGGAATCCTATCCGCCATT
TCTACTTTCACTTTCCTGTTGACAATGATTGGAGCATCAATGGCTAAAAA
CGAGTCTGGAAAAACAATCAATTTGCATTGGACTTCAGATCAGAAGGTAA
TGAGAATTTCCTTGTAGGTTTTAAGTGACACGTTTAGTTGAATCAACGGT
TTGAGAGCCCATTACACAATTTTCAGATAATTGAACCAATGGCTGGCCCA
AGCTTAAAACTGTCATATTCAAAAAAAGTTTTCAACTTAACCGATCGTCT
CGTGTGTGAAATATTCGGATTATGTTTTCAAAAATGCATTTCAGAGAGAG
TTAGTTAACTTTCATCATTCCTTCATCATCTTGTGATGAATTAACTATAG
CAATCATTTACTTATAATGTTTTTATTTATTTTTTCATAGGGCTACAAAC
TACATCTGATGAGTACATTTTCTGAATGGATAATGGGTATCAGTTTTGTC
ATCTTCTTCTTGACGTTTGTCGGTGAATTCAGAAGGATGAAAGCAACTCT
GCCAATCGCTTTCAGCAACCATCAACAACGTATGCCGTTTGAAGAAAATG
TCAATGTGTAAACAAACTCCATTCATAGATCTCATTATTCATTTTTGGGA
AAATTATAGTTTGTTCTGGTATTAAAGCAACTATCTTAAAGGAATTTAAC
TTGGCGAATCAGGGAAAAAACTAATTTTGACGAGAATTTAATTTGGCGGA
TGACGGATTTTTAAATAATTGACTAATTTGACCAATTTTGACCAAATTTC
GATCTTTCTGGGGGTAAAAAGTTGAAATTTTCCTATTTCTCCTACCCTTA
GTAGGACTGACACCCCCCCGGGGTGAAATCATTGATATCGGGGGTAAATT
GTGAAAAATCGGACATAAAAGAAAAAAATTAAATTTGGTCGGAACTTAAT
TTGGCGGATAGACAAATCCGCCAAATTTTCTTCCCGCCAAAATTTCTTCC
CTTAAGGTATAACACCTTTATACCAGAACAGTCTTTAGGATGATTATTTG
ATCATAAGGTACCTTTATACAGTACAGAGAAAACGTGTGCCTGGAAATAT
AAATGAAAATCCACTGAATCTAAAGAAATGTTATTATTACAATAAGTTTA
ACATTGTTTATTTGATCAATAGATATTCAATTCCCAAGATTATTTAATAG
GTATTTTTGAGAA Coding sequence (CDS) from alignment at sc0000203:303845..305557- >TCONS_00015062 ID=TCONS_00015062|Name=TCONS_00015062|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000203:303845..305557- (Clytia hemisphaerica)
GGCTACAAACTACATCTGATGAGTACATTTTCTGAATGGATAATGGGTAT
CAGTTTTGTCATCTTCTTCTTGACGTTTGTCGGTGAATTCAGAAGGATGA
AAGCAACTCTGCCAATCGCTTTCAGCAACCATCAACAACGTATGCCGTTT
GAAGAAAATGTCAATGTGTAAGTAAATTATAAAAAAAAACAAAAAAAAAT
GGACCGCAGGACAAGTTGTTTATTATTCCGCTGTGTGCGGCCACATCATT
TCCTGGTGTTAATGGGAGCATTTACCATTCTCTCTTTCATTCTTGGTTAT
GCCATCTCTGTCTCATTAGACAAAGTAAATTATCTGTTCCCTTATATCAG
TGATACTGGGACAACAACACCAGCAAGTTCTTATTTTGGATTATGTCTCA
ATCTGGCGTCAGTCTTTGCAGCAATTTCAATGTATTTCAGACACAGCTTT
CTTGAAAAACAAGAAGTTTTAACGACAGTGCGATTACACATGTTAAATGA
TGTCACCTTACTTATCGGTGGCTTCTCAGCATTTGGAATTATGCTGGTTG
CTAATTTCCAGGAAACAAGCGTTTTGACCATCCATTTGATTGGTGCTTTC
ATGACATTTGCTTTGGGTAATGTTTATTGTTGGATAAATACTTACATATC
TCACGTTATTCGTAATGAAACTGGGAGCACGCAGGGTATGATTGCTTTGA
GAGGAATCCTATCCGCCATTTCTACTTTCACTTTCCTGTTGACAATGATT
GGAGCATCAATGGCTAAAAACGAGTCTGGAAAAACAATCAATTTGCATTG
GACTTCAGATCAGAAGGGCTACAAACTACATCTGATGAGTACATTTTCTG
AATGGATAATGGGTATCAGTTTTGTCATCTTCTTCTTGACGTTTGTCGGT
GAATTCAGAAGGATGAAAGCAACTCTGCCAATCGCTTTCAGCAACCATCA
ACAACGTATGCCGTTTGAAGAAAATGTCAATGTGTAAGTAAATTATAAAA
AAAAACAAAAAAAAATGGACCGCAGGACAAGTTGTTTATTATTCCGCTGT
GTGCGGCCACATCATTTCCTGGTGTTAATGGGAGCATTTACCATTCTCTC
TTTCATTCTTGGTTATGCCATCTCTGTCTCATTAGACAAAGTAAATTATC
TGTTCCCTTATATCAGTGATACTGGGACAACAACACCAGCAAGTTCTTAT
TTTGGATTATGTCTCAATCTGGCGTCAGTCTTTGCAGCAATTTCAATGTA
TTTCAGACACAGCTTTCTTGAAAAACAAGAAGTTTTAACGACAGTGCGAT
TACACATGTTAAATGATGTCACCTTACTTATCGGTGGCTTCTCAGCATTT
GGAATTATGCTGGTTGCTAATTTCCAGGAAACAAGCGTTTTGACCATCCA
TTTGATTGGTGCTTTCATGACATTTGCTTTGGGTAATGTTTATTGTTGGA
TAAATACTTACATATCTCACGTTATTCGTAATGAAACTGGGAGCACGCAG
GGTATGATTGCTTTGAGAGGAATCCTATCCGCCATTTCTACTTTCACTTT
CCTGTTGACAATGATTGGAGCATCAATGGCTAAAAACGAGTCTGGAAAAA
CAATCAATTTGCATTGGACTTCAGATCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015062-exon-sc0000203-1575043694:304912..305557 | TCONS_00015062-exon-sc0000203-1575043694:304912..305557 | Clytia hemisphaerica | exon |
| TCONS_00015062-exon-sc0000203-1575043694:303845..304617 | TCONS_00015062-exon-sc0000203-1575043694:303845..304617 | Clytia hemisphaerica | exon |
| TCONS_00015062-exon-sc0000203-1510915933:304912..305557 | TCONS_00015062-exon-sc0000203-1510915933:304912..305557 | Clytia hemisphaerica | exon |
| TCONS_00015062-exon-sc0000203-1510915933:303845..304617 | TCONS_00015062-exon-sc0000203-1510915933:303845..304617 | Clytia hemisphaerica | exon |
| TCONS_00015062-exon-sc0000203-1491911889:304912..305557 | TCONS_00015062-exon-sc0000203-1491911889:304912..305557 | Clytia hemisphaerica | exon |
| TCONS_00015062-exon-sc0000203-1491911889:303845..304617 | TCONS_00015062-exon-sc0000203-1491911889:303845..304617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:303845..305557 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR019402 | Frag1/DRAM/Sfk1 |
Blast
BLAST of TCONS_00015062 vs. Swiss-Prot (Human)
Match: DRAM1 (DNA damage-regulated autophagy modulator protein 1 OS=Homo sapiens GN=DRAM1 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.047e-32 Identity = 69/211 (32.70%), Postives = 111/211 (52.61%), Query Frame = 2
Query: 113 SFILGYAISVSLDKVNYLFPYISDTGTTTPASSYFGLCLNLASVFAAISMYFRHSFLEKQEVLTTVRLHMLNDVTLLIGGFSAFGIMLVANFQETSVLTIHLIGAFMTFALGNVYCWINTYISHVIRNETGSTQGMIALRGILSAISTFTFLLTMIGASMAKNESGKTINLHWTSDQKGYKLHLMSTFSEWIMGISFVIFFLTFVGEFRRM 745
+FI+ Y ++V VN PYISDTGTT P S FG +N ++ A +MY R+ ++KQ + N V+L++G FG+ +VANFQE +V +H GA + F G VY + + IS+ + S +R ++SA+S + ++ AS+ L W +K Y H++S EW + F+ +FLTF+ +F+ +
Sbjct: 22 AFIISYVVAVLSGHVNPFLPYISDTGTTPPESGIFGFMINFSAFLGAATMYTRYKIVQKQNQTCYFSTPVFNLVSLVLGLVGCFGMGIVANFQELAVPVVHDGGALLAFVCGVVYTLLQSIISYKSCPQWNSLS-TCHIRMVISAVSCAAVIPMIVCASLI-----SITKLEWNPREKDYVYHVVSAICEWTVAFGFIFYFLTFIQDFQSV 226
The following BLAST results are available for this feature:
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