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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013884 ID=TCONS_00013884|Name=TCONS_00013884|organism=Clytia hemisphaerica|type=transcript|length=1169bpRun BLAST on NCBI protein sequence of TCONS_00013884-protein >TCONS_00013884-protein ID=TCONS_00013884-protein|Name=TCONS_00013884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp MDDRLLEASLYTIKGVAILDNDGERIISRYYDETFPTVKEQREFEKNLFQRun BLAST on NCBI transcript from alignment at sc0000174:302233..319200- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013884 ID=TCONS_00013884|Name=TCONS_00013884|organism=Clytia hemisphaerica|type=transcript|length=16968bp|location=Sequence derived from alignment at sc0000174:302233..319200- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:302233..319200- >TCONS_00013884 ID=TCONS_00013884|Name=TCONS_00013884|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000174:302233..319200- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013884 vs. Swiss-Prot (Human)
Match: COPZ1 (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 1.366e-73 Identity = 102/178 (57.30%), Postives = 148/178 (83.15%), Query Frame = 1
Query: 166 MDDRLLEASLYTIKGVAILDNDGERIISRYYDETFPTVKEQREFEKNLFQKTSRQNAEIIMLDGLTIVYRSSVDLYFYVMGSQYENELILISVLNAFFDAVSTMLRKNVEKRFLMEHLDAVLLAIDELVDGGVLLEADTANIIQRVAIKNEADIPITEQSVSQVLRKAKTELNKQFLK 699
M+ +LE SLYT+K + ILDNDG+R+ ++YYD+T+P+VKEQ+ FEKN+F KT R ++EI +L+GLT+VY+SS+DLYFYV+GS YENEL+L++VLN FD++S MLRKNVEKR L+E+++ + LA+DE+VDGGV+LE+D ++ RVA++ E D+P+TEQ+VSQVL+ AK ++ L+
Sbjct: 1 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE-DVPLTEQTVSQVLQSAKEQIKWSLLR 177 The following BLAST results are available for this feature:
BLAST of TCONS_00013884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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