TCONS_00013884-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013884-protein
Unique NameTCONS_00013884-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013884-protein ID=TCONS_00013884-protein|Name=TCONS_00013884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MDDRLLEASLYTIKGVAILDNDGERIISRYYDETFPTVKEQREFEKNLFQ
KTSRQNAEIIMLDGLTIVYRSSVDLYFYVMGSQYENELILISVLNAFFDA
VSTMLRKNVEKRFLMEHLDAVLLAIDELVDGGVLLEADTANIIQRVAIKN
EADIPITEQSVSQVLRKAKTELNKQFLKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007751XLOC_007751Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013884TCONS_00013884Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 13..152
e-value: 4.7E-31
score: 107.5
NoneNo IPR availableGENE3D3.30.450.60coord: 1..153
e-value: 7.3E-42
score: 142.1
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 67..77
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 13..150

Blast
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BLAST of TCONS_00013884-protein vs. Swiss-Prot (Human)
Match: COPZ1 (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.340e-78
Identity = 102/178 (57.30%), Postives = 148/178 (83.15%), Query Frame = 0 
Query:    1 MDDRLLEASLYTIKGVAILDNDGERIISRYYDETFPTVKEQREFEKNLFQKTSRQNAEIIMLDGLTIVYRSSVDLYFYVMGSQYENELILISVLNAFFDAVSTMLRKNVEKRFLMEHLDAVLLAIDELVDGGVLLEADTANIIQRVAIKNEADIPITEQSVSQVLRKAKTELNKQFLK 178
            M+  +LE SLYT+K + ILDNDG+R+ ++YYD+T+P+VKEQ+ FEKN+F KT R ++EI +L+GLT+VY+SS+DLYFYV+GS YENEL+L++VLN  FD++S MLRKNVEKR L+E+++ + LA+DE+VDGGV+LE+D   ++ RVA++ E D+P+TEQ+VSQVL+ AK ++    L+
Sbjct:    1 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE-DVPLTEQTVSQVLQSAKEQIKWSLLR 177
The following BLAST results are available for this feature:
BLAST of TCONS_00013884-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPZ12.340e-7857.30Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]
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