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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013753 ID=TCONS_00013753|Name=TCONS_00013753|organism=Clytia hemisphaerica|type=transcript|length=1341bp
TcgaacctcgtccccgtgtatcgcAGGCTTTCTTTACGTTACTGATGACC
gccagtaagcataaaaaagctgatactACAACAGGGAACAAAGTTAAGTA
TAATGAACAATTAACGAATTGCATAGTTAATCTTTTGTTTATACCTTGCA
CATGTGATTAACTCAATAAATCCTTTCTTAAAATGTTTGCTTCCAAATGC
ATAACAAAGAGGGTTCAAAAATGAATTTCCCCAACCAACGATATAACAAA
ACCGCCATAAACGCTCGGGCAGCCTTATGTTCTGACTTGAAACAATGACG
GTTGACAGGTAATAAGGCATCCAGGAGATTGAAAAAGCAACAATGATTAA
AAGCAAAAGTTGTAAGCCTTTTTTGGCATTCTTTTGTTGCCGATTTTTCT
CAACCCTTCTCACAGTGGATCGATTATCACTTTTCGTCGGTCCGACTACC
GCCGTCGTGACGGTTGACGGTATAACAGAAATACCGTCTGTTGCTTCAGT
TTGTTGTTCTTGTGACGTCATTGTTGGCATAGCAGCAGGTGCTGACGTTT
GTGATTGTGATTGTGTTGCAACCATGACAACTCGTGGTTTCACCTTCCTC
ACAAATGTCGAAGTTCTTCCCATATTAACCAATCGATAGGAAACCAAACC
GTACGCGATTGTCGTGAACAGAACGGGGCCGTAATACGAACAAAAAGCCG
TAATAAAAGTTACAAACCCGTTCTCTAACAGGAACTGAATGTAGCACTGA
TCATGGGGTACCGTGTGTTGCCCAACAGCATGCGGGTACCCTAAAATAGC
GGGCGCCCAAATCAAAAACGCCAAAATCCAAATAAAGGTTATAACTTTTT
TGATATACGCCCTGTTGCATTGAACTCGATGTTTTACGGGAAACCATGTG
AAGTAGAACCGGTCATACGAGATCGCTAAGAGTGTTAGGGTGGATACAGT
GCACGCCCAATAGTCGATCACAAGCCAGGCGTTACATACGATAACGCCCA
TCGGCCAGTATCCGAACATAAGATATACGGTATAGAAGTTAACCGGAATG
AGCCCGATAATAATGTCCGCCACAGCCAGTGATAAAATGAAGAAGTTTTT
GGGTGATTGGAGTTTGCGGTTTTTGTAGTAGATAATGATGACGAATATGT
TGCCAAGGACAACCAAGAGAGACATGATTGTCATGGAGATAGCTATGAAG
GCAAGCTCACCTGAGGAGGGAAGGAGAGAGAGTGGTTTTTAGTATCATGG
CTATGAAGTATGTAGGAGAAAGTAAATACATATGCATTTGTGAATGAATG
GATGTTTTTGTGCGTTTTCTTACGAGTTTTGTGAAGCTTTG Run BLAST on NCBI protein sequence of TCONS_00013753-protein >TCONS_00013753-protein ID=TCONS_00013753-protein|Name=TCONS_00013753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MTIMSLLVVLGNIFVIIIYYKNRKLQSPKNFFILSLAVADIIIGLIPVNF
YTVYLMFGYWPMGVIVCNAWLVIDYWACTVSTLTLLAISYDRFYFTWFPV
KHRVQCNRAYIKKVITFIWILAFLIWAPAILGYPHAVGQHTVPHDQCYIQ
FLLENGFVTFITAFCSYYGPVLFTTIAYGLVSYRLVNMGRTSTFVRKVKP
RVVMVATQSQSQTSAPAAMPTMTSQEQQTEATDGISVIPSTVTTAVVGPT
KSDNRSTVRRVEKNRQQKNAKKGLQLLLLIIVAFSISWMPYYLSTVIVSS
QNIRLPERLWRFCYIVGWGNSFLNPLCYAFGSKHFKKGFIELITCARYKQ
KINYAIR Run BLAST on NCBI transcript from alignment at sc0000171:427196..428536 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013753 ID=TCONS_00013753|Name=TCONS_00013753|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at sc0000171:427196..428536 (Clytia hemisphaerica)
CAAAGCTTCACAAAACTCGTAAGAAAACGCACAAAAACATCCATTCATTC
ACAAATGCATATGTATTTACTTTCTCCTACATACTTCATAGCCATGATAC
TAAAAACCACTCTCTCTCCTTCCCTCCTCAGGTGAGCTTGCCTTCATAGC
TATCTCCATGACAATCATGTCTCTCTTGGTTGTCCTTGGCAACATATTCG
TCATCATTATCTACTACAAAAACCGCAAACTCCAATCACCCAAAAACTTC
TTCATTTTATCACTGGCTGTGGCGGACATTATTATCGGGCTCATTCCGGT
TAACTTCTATACCGTATATCTTATGTTCGGATACTGGCCGATGGGCGTTA
TCGTATGTAACGCCTGGCTTGTGATCGACTATTGGGCGTGCACTGTATCC
ACCCTAACACTCTTAGCGATCTCGTATGACCGGTTCTACTTCACATGGTT
TCCCGTAAAACATCGAGTTCAATGCAACAGGGCGTATATCAAAAAAGTTA
TAACCTTTATTTGGATTTTGGCGTTTTTGATTTGGGCGCCCGCTATTTTA
GGGTACCCGCATGCTGTTGGGCAACACACGGTACCCCATGATCAGTGCTA
CATTCAGTTCCTGTTAGAGAACGGGTTTGTAACTTTTATTACGGCTTTTT
GTTCGTATTACGGCCCCGTTCTGTTCACGACAATCGCGTACGGTTTGGTT
TCCTATCGATTGGTTAATATGGGAAGAACTTCGACATTTGTGAGGAAGGT
GAAACCACGAGTTGTCATGGTTGCAACACAATCACAATCACAAACGTCAG
CACCTGCTGCTATGCCAACAATGACGTCACAAGAACAACAAACTGAAGCA
ACAGACGGTATTTCTGTTATACCGTCAACCGTCACGACGGCGGTAGTCGG
ACCGACGAAAAGTGATAATCGATCCACTGTGAGAAGGGTTGAGAAAAATC
GGCAACAAAAGAATGCCAAAAAAGGCTTACAACTTTTGCTTTTAATCATT
GTTGCTTTTTCAATCTCCTGGATGCCTTATTACCTGTCAACCGTCATTGT
TTCAAGTCAGAACATAAGGCTGCCCGAGCGTTTATGGCGGTTTTGTTATA
TCGTTGGTTGGGGAAATTCATTTTTGAACCCTCTTTGTTATGCATTTGGA
AGCAAACATTTTAAGAAAGGATTTATTGAGTTAATCACATGTGCAAGGTA
TAAACAAAAGATTAACTATGCAATTCGTTAATTGTTCATTATACTTAACT
TTGTTCCCTGTTGTagtatcagcttttttatgcttactggcGGTCATCAG
TAACGTAAAGAAAGCCTgcgatacacggggacgaggttcgA Coding sequence (CDS) from alignment at sc0000171:427196..428536 >TCONS_00013753 ID=TCONS_00013753|Name=TCONS_00013753|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000171:427196..428536 (Clytia hemisphaerica)
ATGACAATCATGTCTCTCTTGGTTGTCCTTGGCAACATATTCGTCATCAT
TATCTACTACAAAAACCGCAAACTCCAATCACCCAAAAACTTCTTCATTT
TATCACTGGCTGTGGCGGACATTATTATCGGGCTCATTCCGGTTAACTTC
TATACCGTATATCTTATGTTCGGATACTGGCCGATGGGCGTTATCGTATG
TAACGCCTGGCTTGTGATCGACTATTGGGCGTGCACTGTATCCACCCTAA
CACTCTTAGCGATCTCGTATGACCGGTTCTACTTCACATGGTTTCCCGTA
AAACATCGAGTTCAATGCAACAGGGCGTATATCAAAAAAGTTATAACCTT
TATTTGGATTTTGGCGTTTTTGATTTGGGCGCCCGCTATTTTAGGGTACC
CGCATGCTGTTGGGCAACACACGGTACCCCATGATCAGTGCTACATTCAG
TTCCTGTTAGAGAACGGGTTTGTAACTTTTATTACGGCTTTTTGTTCGTA
TTACGGCCCCGTTCTGTTCACGACAATCGCGTACGGTTTGGTTTCCTATC
GATTGGTTAATATGGGAAGAACTTCGACATTTGTGAGGAAGGTGAAACCA
CGAGTTGTCATGGTTGCAACACAATCACAATCACAAACGTCAGCACCTGC
TGCTATGCCAACAATGACGTCACAAGAACAACAAACTGAAGCAACAGACG
GTATTTCTGTTATACCGTCAACCGTCACGACGGCGGTAGTCGGACCGACG
AAAAGTGATAATCGATCCACTGTGAGAAGGGTTGAGAAAAATCGGCAACA
AAAGAATGCCAAAAAAGGCTTACAACTTTTGCTTTTAATCATTGTTGCTT
TTTCAATCTCCTGGATGCCTTATTACCTGTCAACCGTCATTGTTTCAAGT
CAGAACATAAGGCTGCCCGAGCGTTTATGGCGGTTTTGTTATATCGTTGG
TTGGGGAAATTCATTTTTGAACCCTCTTTGTTATGCATTTGGAAGCAAAC
ATTTTAAGAAAGGATTTATTGAGTTAATCACATGTGCAAGGTATAAACAA
AAGATTAACTATGCAATTCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013753-exon-sc0000171-1491911889:427196..428536 | TCONS_00013753-exon-sc0000171-1491911889:427196..428536 | Clytia hemisphaerica | exon |
| TCONS_00013753-exon-sc0000171-1510915933:427196..428536 | TCONS_00013753-exon-sc0000171-1510915933:427196..428536 | Clytia hemisphaerica | exon |
| TCONS_00013753-exon-sc0000171-1575043694:427196..428536 | TCONS_00013753-exon-sc0000171-1575043694:427196..428536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:427196..428536 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00013753 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 5.570e-54 Identity = 124/420 (29.52%), Postives = 199/420 (47.38%), Query Frame = -2
Query: 132 ELAFIAISMTIMSLLVVLGNIFVIIIYYKNRKLQSPKNFFILSLAVADIIIGLIPVNFYTVYLMFGYWPMGVIVCNAWLVIDYWACTVSTLTLLAISYDRFYFTWFPVKHRVQCNRAYIKKVITFIWILAFLIWAPAILGYPHAVGQHTVPHDQCYIQFLLENGFVTFITAFCSYYGPVLFTTIAYGLVSYRLVNMGRTSTFVRKVKPRVVMVATQSQSQTSAPAA------------------------------------MPTMTSQEQQTEATDGISVIPSTVTTAVVGPTKSDNRS---TVRRVEKNRQQK----------------------NAKKGLQLLLLIIVAFSISWMPYYLSTVIVSSQNIRLPERLWRFCYIVGWGNSFLNPLCYAFGSKHFKKGFIELITCARYKQK 1208
++AFI I+ ++SL V GN+ V+I + N +L++ N+F+LSLA AD+IIG +N YT YL+ G+W +G + C+ WL +DY A S + LL IS+DR++ P+ +R + +I W+++F++WAPAIL + + VG+ TV QCYIQF L +TF TA ++Y PV Y + N R ++ + + S S+ S P A M ++TS E + ++ + +P V PTK RS TV+R K + + KK + L I++AF ++W PY + ++ + +PE LW Y + + NS +NP+CYA +K F+ F L+ C K++
Sbjct: 24 QVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQF-LSQPIITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMP-MVDPEAQAPTKQPPRSSPNTVKRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFRLLLLCRWDKRR 441
The following BLAST results are available for this feature:
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