TCONS_00013753-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013753-protein
Unique Name	TCONS_00013753-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	357

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013753-protein ID=TCONS_00013753-protein|Name=TCONS_00013753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MTIMSLLVVLGNIFVIIIYYKNRKLQSPKNFFILSLAVADIIIGLIPVNF
YTVYLMFGYWPMGVIVCNAWLVIDYWACTVSTLTLLAISYDRFYFTWFPV
KHRVQCNRAYIKKVITFIWILAFLIWAPAILGYPHAVGQHTVPHDQCYIQ
FLLENGFVTFITAFCSYYGPVLFTTIAYGLVSYRLVNMGRTSTFVRKVKP
RVVMVATQSQSQTSAPAAMPTMTSQEQQTEATDGISVIPSTVTTAVVGPT
KSDNRSTVRRVEKNRQQKNAKKGLQLLLLIIVAFSISWMPYYLSTVIVSS
QNIRLPERLWRFCYIVGWGNSFLNPLCYAFGSKHFKKGFIELITCARYKQ
KINYAIR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007683	XLOC_007683	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013753	TCONS_00013753	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 110..131 score: 24.4 coord: 310..336 score: 28.26 coord: 29..50 score: 31.33 coord: 74..96 score: 27.61 coord: 273..297 score: 23.63 coord: 159..182 score: 17.32
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 5..343 e-value: 0.0019 score: -58.6
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 11..328 e-value: 6.9E-51 score: 172.9
None	No IPR available	GENE3D	1.20.1070.10		coord: 1..355 e-value: 2.3E-70 score: 236.6
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 2..190 coord: 259..350
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 11..328 score: 36.701

Blast

[Close]

BLAST of TCONS_00013753-protein vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.808e-53
Identity = 120/410 (29.27%), Postives = 192/410 (46.83%), Query Frame = 0

Query:    3 IMSLLVVLGNIFVIIIYYKNRKLQSPKNFFILSLAVADIIIGLIPVNFYTVYLMFGYWPMGVIVCNAWLVIDYWACTVSTLTLLAISYDRFYFTWFPVKHRVQCNRAYIKKVITFIWILAFLIWAPAILGYPHAVGQHTVPHDQCYIQFLLENGFVTFITAFCSYYGPVLFTTIAYGLVSYRLVNMGRTSTFVRKVKPRVVMVATQSQSQTSAPAA------------------------------------MPTMTSQEQQTEATDGISVIPSTVTTAVVGPTKSDNRS---TVRRVEKNRQQK----------------------NAKKGLQLLLLIIVAFSISWMPYYLSTVIVSSQNIRLPERLWRFCYIVGWGNSFLNPLCYAFGSKHFKKGFIELITCARYKQK 351
            ++SL  V GN+ V+I +  N +L++  N+F+LSLA AD+IIG   +N YT YL+ G+W +G + C+ WL +DY A   S + LL IS+DR++    P+ +R +        +I   W+++F++WAPAIL + + VG+ TV   QCYIQF L    +TF TA  ++Y PV      Y  +     N  R    ++  +       + S S+ S P A                                    M ++TS E +   ++ +  +P  V      PTK   RS   TV+R  K  + +                        KK  + L  I++AF ++W PY +  ++ +     +PE LW   Y + + NS +NP+CYA  +K F+  F  L+ C   K++
Sbjct:   34 LLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQF-LSQPIITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQGSETPGKGGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEPGSEVVIKMP-MVDPEAQAPTKQPPRSSPNTVKRPTKKGRDRAGKGQKPRGKEQLAKRKTFSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNKAFRDTFRLLLLCRWDKRR 441

The following BLAST results are available for this feature:

BLAST of TCONS_00013753-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACM1	2.808e-53	29.27	Muscarinic acetylcholine receptor M1 OS=Homo sapie...	[more]

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TCONS_00013753-protein (polypeptide) - C. hemisphaerica