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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013612 ID=TCONS_00013612|Name=TCONS_00013612|organism=Clytia hemisphaerica|type=transcript|length=4176bpRun BLAST on NCBI protein sequence of TCONS_00013612-protein >TCONS_00013612-protein ID=TCONS_00013612-protein|Name=TCONS_00013612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp MNLFLFWIFAISICGNLVVMVESQGDSDFPIDDFKDISGDSNDFEDQNIRRun BLAST on NCBI transcript from alignment at sc0000170:347891..357198- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013612 ID=TCONS_00013612|Name=TCONS_00013612|organism=Clytia hemisphaerica|type=transcript|length=9308bp|location=Sequence derived from alignment at sc0000170:347891..357198- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000170:347891..357198- >TCONS_00013612 ID=TCONS_00013612|Name=TCONS_00013612|organism=Clytia hemisphaerica|type=CDS|length=22383bp|location=Sequence derived from alignment at sc0000170:347891..357198- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013612 vs. Swiss-Prot (Human)
Match: TSHR (Thyrotropin receptor OS=Homo sapiens GN=TSHR PE=1 SV=2) HSP 1 Score: 310.457 bits (794), Expect = 6.496e-90 Identity = 183/520 (35.19%), Postives = 286/520 (55.00%), Query Frame = 1
Query: 1012 LHLDDTKLSRLPSAHGIKNLKRLSIKKVPLLFTIPDPKKFENLDRIDVTYSMHCCAFEQRELERK--NEYLANKNPADTGKQCNNTIGELSXXXXXXXXXXXXXXXXXXXXXXXMSGDSEDFFRDDLMHKYLDAV--FGPE---PEESTITNLSVCDYGEGIKYKANPVKCNPKPDAFNPCQDVMGTTALRLFSWLISIFAILGNLFQLIILFYSRQELSVYKLLMYNLGFSNLMMGMYLLVLCCVDTYTFGEYYNYVQMWQYSGGCQAFGFIALFATQLSFCSLVLITVERFLLIIFALKVGKQMKLNHAKIAVAAVWFYSFIVAILPVTGKVSSYSKIAICLPVDIPNIIAIGYIVWLLLAYVIAFIVIVVCYVKMYASIS--QSRPGTPGSTSNQIDVQVAKRMAMIIFSNFLCWLPISIVGFVALWSGLRMNVDVAKFLLVFIFPLNACTNPFLYAIFTRVFRGDTLALLSSCGLCKKAEQNYRNR--APTNYMKSQ-QRPKHPSAGGGDQRHFMH 2535
L + T ++ LPS G+++LK L + L +P F +L R D++Y HCCAF+ ++ R + N++ + +Q ++ L+ + + G E + + D + FG E P+E T+ Y I + + C PK D FNPC+D+MG LR+ W +S+ A+LGN+F L+IL S +L+V + LM NL F++ MGMYLL++ VD YT EYYN+ WQ GC GF +FA++LS +L +IT+ER+ I FA+++ ++++L HA + W F++A+LP+ G +SSY+K++ICLP+D +A+ YIV++L ++AF+++ CYVK+Y ++ Q PG D ++AKRMA++IF++F+C PIS A+ + + V +K LLV +PLN+C NPFLYAIFT+ F+ D LLS G+CK+ Q YR + P N Q Q+ H D R +H
Sbjct: 231 LDVSQTSVTALPSK-GLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSHCCAFKNQKKIRGILESLMCNESSMQSLRQ-RKSVNALNSPLHQEYEENLGDSIVGYKEKSKFQDTHNNAHYYVFFEEQEDEIIGFGQELKNPQEETLQAFD-SHYDYTICGDSEDMVCTPKSDEFNPCEDIMGYKFLRIVVWFVSLLALLGNVFVLLILLTSHYKLNVPRFLMCNLAFADFCMGMYLLLIASVDLYTHSEYYNHAIDWQTGPGCNTAGFFTVFASELSVYTLTVITLERWYAITFAMRLDRKIRLRHACAIMVGGWVCCFLLALLPLVG-ISSYAKVSICLPMDTETPLALAYIVFVLTLNIVAFVIVCCCYVKIYITVRNPQYNPGDK-------DTKIAKRMAVLIFTDFICMAPISFYALSAILNKPLITVSNSKILLVLFYPLNSCANPFLYAIFTKAFQRDVFILLSKFGICKRQAQAYRGQRVPPKNSTDIQVQKVTH------DMRQGLH 733 The following BLAST results are available for this feature:
BLAST of TCONS_00013612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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