TCONS_00013612-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013612-protein
Unique Name	TCONS_00013612-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	828

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013612-protein ID=TCONS_00013612-protein|Name=TCONS_00013612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MNLFLFWIFAISICGNLVVMVESQGDSDFPIDDFKDISGDSNDFEDQNIR
LGGTLQMQLTAITEIPQNLMREMAQNVDSVQMAHNKIKRISKKDFPRGCC
LNVIYINLHDNFIEEIEDGVFEHLPKLVRVDLSDNLIHKFPNLKAKKLQR
LDLQTNIIEKIDKRAMDHYKVIWHLDMRWNKVHHVVEHTFEENKKLIYLN
IGHNPLKKVDEYGLPASLENLHLDDTKLSRLPSAHGIKNLKRLSIKKVPL
LFTIPDPKKFENLDRIDVTYSMHCCAFEQRELERKNEYLANKNPADTGKQ
CNNTIGELSDFGDIDTPDFTGGDDGFGNENDTMSGDSEDFFRDDLMHKYL
DAVFGPEPEESTITNLSVCDYGEGIKYKANPVKCNPKPDAFNPCQDVMGT
TALRLFSWLISIFAILGNLFQLIILFYSRQELSVYKLLMYNLGFSNLMMG
MYLLVLCCVDTYTFGEYYNYVQMWQYSGGCQAFGFIALFATQLSFCSLVL
ITVERFLLIIFALKVGKQMKLNHAKIAVAAVWFYSFIVAILPVTGKVSSY
SKIAICLPVDIPNIIAIGYIVWLLLAYVIAFIVIVVCYVKMYASISQSRP
GTPGSTSNQIDVQVAKRMAMIIFSNFLCWLPISIVGFVALWSGLRMNVDV
AKFLLVFIFPLNACTNPFLYAIFTRVFRGDTLALLSSCGLCKKAEQNYRN
RAPTNYMKSQQRPKHPSAGGGDQRHFMHYEPPVRAIDRFERNIENQTEFD
SPETPIKAMIDPNRRQIYDETKPRSDSTRGLLEDKDPRFRSASSDTCSTG
MSVQSTDSEVYDEFSRMIGSVKTENYLA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007597	XLOC_007597	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013612	TCONS_00013612	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR002131	Gphrmn_rcpt_fam
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0016500	protein-hormone receptor activity
GO:0005515	protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016500	protein-hormone receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 569..592 score: 20.47 coord: 435..456 score: 17.01 coord: 614..638 score: 24.25 coord: 652..678 score: 27.03 coord: 487..509 score: 24.74 coord: 402..426 score: 18.08 coord: 523..544 score: 22.38
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 417..670 e-value: 5.8E-24 score: 84.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 493..509
IPR002131	Glycoprotein hormone receptor family	PRINTS	PR00373	GLYCHORMONER	coord: 644..660 score: 36.88 coord: 467..480 score: 50.82 coord: 391..408 score: 54.91 coord: 480..494 score: 49.74 coord: 610..628 score: 53.64 coord: 673..692 score: 48.65
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 42..391 e-value: 8.4E-40 score: 135.8
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 57..277
None	No IPR available	GENE3D	1.20.1070.10		coord: 392..724 e-value: 5.0E-45 score: 153.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 763..805
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 701..724
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 394..699
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 76..137 e-value: 3.9E-7 score: 29.6
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 417..670 score: 31.224

Blast

[Close]

BLAST of TCONS_00013612-protein vs. Swiss-Prot (Human)
Match: FSHR (Follicle-stimulating hormone receptor OS=Homo sapiens GN=FSHR PE=1 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 2.310e-96
Identity = 230/703 (32.72%), Postives = 354/703 (50.36%), Query Frame = 0

Query:   58 QLTAITEIPQNLMREMAQNVDSVQMAHNKIKRISKKDFPRGCCLNVIYINLHDNFIEEIEDGVFEHLPKL--VRVDLSDNLIH-------KFPNL-----------------KAKKLQR--LDLQTNI----IEKIDKRAMDHYKVIWHLDMRWNKVHHVVEHTFEENKKLIYLNIG-HNPLKKV--DEYGLPASLENLHLDDTKLSRLPSAHGIKNLKRLSIKKVPLLFTIPDPKKFENLDRIDVTYSMHCCAFE--QRELERKNEYLANKN----PADTGKQCNNTIGELSDFGDIDTPDFTGGDDGFGNENDTMSGDSEDFFRDDLMHKYLDAVFGPEPEESTITNLSVCDYGEGIKYKANPVKCNPKPDAFNPCQDVMGTTALRLFSWLISIFAILGNLFQLIILFYSRQELSVYKLLMYNLGFSNLMMGMYLLVLCCVDTYTFGEYYNYVQMWQYSGGCQAFGFIALFATQLSFCSLVLITVERFLLIIFALKVGKQMKLNHAKIAVAAVWFYSFIVAILPVTGKVSSYSKIAICLPVDIPNIIAIGYIVWLLLAYVIAFIVIVVCYVKMYASISQSRPGTPGSTSNQIDVQVAKRMAMIIFSNFLCWLPISIVGFVALWSGLRMNVDVAKFLLVFIFPLNACTNPFLYAIFTRVFRGDTLALLSSCGLCKKAEQNYRNRAPTNYMKSQQRPKHPSAG 719
            Q + +TEIP +L R    N   ++    K++ I K  F     L  I I+ +D  +E IE  VF +LPKL  +R++ ++NL++         PNL                 K   LQ+  LD+Q NI    IE+     +    VI  L+   N +  +    F    +L  LN+  +N L+++  D +   +    L +  T++  LPS +G++NLK+L  +    L  +P  +K   L    +TY  HCCAF   +R++   +  + NK+      D   Q     G+ S   + +   ++ G D    E           F  DL ++ +D                              V C+PKPDAFNPC+D+MG   LR+  W ISI AI GN+  L+IL  S+ +L+V + LM NL F++L +G+YLL++  VD +T  +Y+NY   WQ   GC A GF  +FA++LS  +L  IT+ER+  I  A+++  +++L HA   +   W ++F  A+ P+ G +SSY K++ICLP+DI + ++  Y++ LL+  V+AF+VI  CY+ +Y ++       P   S+  D ++AKRMAM+IF++FLC  PIS     A      + V  AK LLV   P+N+C NPFLYAIFT+ FR D   LLS CG  +   Q YR    +    +  R  H S+ 
Sbjct:   33 QESKVTEIPSDLPR----NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--NGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHP-ICNKSILRQEVDYMTQAR---GQRSSLAEDNESSYSRGFDMTYTE-----------FDYDLCNEVVD------------------------------VTCSPKPDAFNPCEDIMGYNILRVLIWFISILAITGNIIVLVILTTSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQTGAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLDCKVQLRHAASVMVMGWIFAFAAALFPIFG-ISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYIHIYLTVRN-----PNIVSSSSDTRIAKRMAMLIFTDFLCMAPISFFAISASLKVPLITVSKAKILLVLFHPINSCANPFLYAIFTKNFRRDFFILLSKCGCYEMQAQIYRTETSSTVHNTHPRNGHCSSA 675

The following BLAST results are available for this feature:

BLAST of TCONS_00013612-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013612-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FSHR	2.310e-96	32.72	Follicle-stimulating hormone receptor OS=Homo sapi...	[more]

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TCONS_00013612-protein (polypeptide) - C. hemisphaerica