TCONS_00013517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013517
Unique NameTCONS_00013517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013517 ID=TCONS_00013517|Name=TCONS_00013517|organism=Clytia hemisphaerica|type=transcript|length=1469bp
GCGAACAAACGAACAATTttgtaaatgaaaatgaaaaagaacaaaagaag
gtAACAAATAGAAGAAGATttcataagaaaataaagatggcTGCGAATGA
CATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCTTA
CCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACAGAGAAG
CCATCTTTAGCCATTCGATTGATTCATCCATGGTTTCACTTGATATCCTG
GCTTATACCTTTATTCATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAG
GCGATAATTATGATTCAGCGTCTGCTGGATGGTGCTGGATTCGAATGGAT
GATGCTCATGCAACATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTT
GTTAACATACATCGTTATTATAGTGCTTTatactaaactaaaatggcatc
TTCAACGAAAGATTCGAAAATTTGAACGTAGTGAATCATTCAACGAAAAC
TTGACACGTTTCTCACTTAAAGCAGCCAAACAGGTGGACAAAAAGATCAT
TCTAGTACCTATTGTTTACATATTGTTACGCATTTGGGGTACGGTGCGTT
TCTTCATGTTTATAGCTGGTACGGATGATAAGAAATATAGAGTTGTAGCT
GACGTCTTCATAGTTTTACAATTATTTGGTGATAACTTGGTTGGATTTGC
AAACTGTGTATTGTTTTGTTTCCTAACAGTGAAAATTCGAAGACATTTAA
AAAGTTCGTTGTCTCGAATGTACATCAAATGTCGGACATGTTACCGGCCA
GACGAGTTTAGTTATATGGATATTTCTTCGGATGGAGAATTAAGTGAAGA
TATGTCACTTTCTTCTACATGAtacatattcaaaatgaagtcaTTTTTAC
TATCTGATAAAGGTGGAAATGTGGAAATTTGCTCCAAATTTGAATACGCA
CTATAAAtaaatatgaatatttttatttgcatTTTTGGATACACTTTTGT
TACGATAGATTATCGTGTTCACTTTATTATGACTACGTATTATATTTTAC
AGAGAccatttttatattataaacAGTTTGGAATTTTTAACCCTTTCAAC
CCAAAAGCTCTTTATGAGGTTTTTTAAAAACACTATGATCTGAATATGAG
ATATATCCGGAAGTCATCATTGAGAACTTAGAACTGAAAGGGTGAAACGA
AAAATTTTGTGtagaatttttataattttgtaaaTGTTATAAAAGTTCAC
TAATCTAACAGCACTAATTGATACTAATTTAAAAAgtcataatttattta
tttaaaatccTGGTCTTGCTGTCGCCTAAACTAAAGGCAACCCTGTGTCA
CAGAACCGTTTGGACCCCAGCCccatttggcaaaaatttcgtctctggtg
gtggaaaaataccctagaatttcagccccactgggaaattcaGTGTTTAA
AAATTGCGCTTCAAAACcg
Run BLAST on NCBI

protein sequence of TCONS_00013517-protein

>TCONS_00013517-protein ID=TCONS_00013517-protein|Name=TCONS_00013517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
EQTNNFVNENEKEQKKVTNRRRFHKKIKMAANDMLSELFKFHAQIIIVLT
CSLSILGSILIITTEKPSLAIRLIHPWFHLISWLIPLFINLLALFLRKLG
DNYDSASAGWCWIRMDDAHATLWMFLDGKGLELLTYIVIIVLYTKLKWHL
QRKIRKFERSESFNENLTRFSLKAAKQVDKKIILVPIVYILLRIWGTVRF
FMFIAGTDDKKYRVVADVFIVLQLFGDNLVGFANCVLFCFLTVKIRRHLK
SSLSRMYIKCRTCYRPDEFSYMDISSDGELSEDMSLSST
Run BLAST on NCBI

transcript from alignment at sc0000168:449803..453242-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013517 ID=TCONS_00013517|Name=TCONS_00013517|organism=Clytia hemisphaerica|type=transcript|length=3440bp|location=Sequence derived from alignment at sc0000168:449803..453242- (Clytia hemisphaerica)
GCGAACAAACGAACAATTTTGTAAATGAAAATGAAAAAGAACAAAAGAAG
GTAACAAATAGAAGAAGATTTCATAAGAAAATAAAGATGGCTGCGAATGA
CATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCTTA
CCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACGTACGCT
CTCTATAAAGATATTCGTTCACCCTCACGTCACATTATTGTTTGTATAAG
CATAGCTGATATGTTTCAAGCAATGGCTAACTTATACTCTGCTTATTTTG
TAAACCAAAAGGATGAACATTTTATGGAAAATTGTATAATCCAAAGTTTT
GTTGGGTCAACAGCTATCAATTGTTCCTTTATGTGGACTATGATGCTAGC
CATTTTTCTCTTTATCTCATTGGACAGAGAGAAGCCATCTTTAGCCATTC
GATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTATTC
ATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGATTC
AGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGGTATCATATTTA
TTTTACAATCTTTATTCATTTTAAGAATATTCCCAGAATCTCCCAGCTGC
ATAGGATAGTTTGTTGAGCGGTTAACAGACAAATAAAAAAATTTGTCGGT
GGGAAGGTACTGGCTAGTATGAAGGCATATGCGCTTTAAATCTTAAGTGA
AGAAATAGCCTGATTCTAATTGCTCCAAGTGAAATTTTTTTACCAATCAT
CAGGTGCTCTCCCAAAAGATAGATTTTTCTTCTGAGTGCAAACTAACTTC
TTTCTGAATTCGATTTTACTAGGTTGGGGGTTTTTTTTGGTTGAGTTTAT
CTCTACCCAAATATTATATTAATTCTTTTTTTTTGTCTAGCTCATGCAAC
ATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACATCG
TTATTATAGTGCTTTATACTAAACTAAAATGGCATCTTCAACGAAAGGTA
TTAAATTTAAGGGTTTTTAAACTTTCTTCAAATCTTTATGTTTGTTTTAC
TGGTAGCTTTAAGTATTTCAGAATTAATTGCCTCCTTACCGAATGATTTA
ATTCTTTCTTGTTATTCAGAGGTTTGCTATCTATAATCCAGGAAATAGTT
ACAGAAAAATGCTTTTAAAACCTAGTCCCTCTTATACAGTGTTCAGGTCG
CTGGAAAGTTTGTCTGTTCAAGAAAGGGAGGAGGCATCTCAGAGGAGTTG
TTTCATTCTTTTTTGCCCCTGATTGTCAGTCATTCAGCAGTTTTCGAGTT
TTCAGTCATATAGTTATGTCCTACTATTTTGTATTTGTTGTCATGAATGA
TTTTATTAATTACTTTCTACACTTTCTTATTCTAGATTCGAAAATTTGAA
CGTAGTGAATCATTCAACGAAAACTTGACACGTTTCTCACTTAAAGCAGC
CAAACAGGTGGACAAAAAGATCATTCTAGTACCTATTGTTTACATATTGT
TACGCATTTGGGGTACGGTGCGTTTCTTCATGTTTATAGCTGGTACGGAT
GATAAGAAATATAGAGTTGTAGCTGACGTCTTCATAGTTTTACAAGTAAG
TGAGAGTAAAATTGCTTTCTTTTACCGTCGTCCTCAGGTACTTAGGATCT
GGAGAAGCCAGAAACTAGCCACCCCTTTGCAGAAAAACACAAACTCAATG
AAATCATTTTAACGGTGGTCTTAGAAGGATGTATATTTGAATGTAAGGCC
TGATTTATATGTGGGTGGGAACTTGGCAACCACCTTTTTCTTTTTCTACA
GAACCTTAGTCTTACTTTGGTTATCTTGCTTTTTCTGTTGATTTCATAAA
GACTCTCCTGGATGACTCATCTCTTCAAATTGGATGTGATACAACCCAAT
CTTGTTTAGCTCTAGTTTAGACAATCAACTTTTCGCCCTGTCTATTCTTA
TTGCGAATTGAAGTTGGCATCAGAGAGTTGGCTGTCTAAAGTCAATGCAT
TGCCCTCGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTAGTTATTTGG
TGATAACTTGGTTGGATTTGCAAACTGTGTATTGTTTTGTTTCCTAACAG
TGAAAATTCGAAGACATTTAAAAAGTTCGTTGTCTCGAATGTACATCAAA
TGTCGGACATGTTACCGGCCAGACGAGTTTAGTTATATGGATATTTCTTC
GGATGGAGAATTAAGTGAAGATATGTCACTTTCTTCTACATGATACATAT
TCAAAATGAAGTCATTTTTACTATCTGATAAAGGTGGAAATGTGGAAATT
TGCTCCAAATTTGAATACGCACTATAAATAAATATGAATATTTTTATTTG
CATTTTTGGATACACTTTTGTTACGATAGATTATCGTGTTCACTTTATTA
TGACTACGTATTATATTTTACAGAGACCATTTTTATATTATAAACAGTTT
GGAATTTTTAACCCTTTCAACCCAAAAGCTCTTTATGAGGTTTTTTAAAA
ACACTATGATCTGAATATGAGATATATCCGGAAGTCATCATTGAGAACTT
AGAACTGAAAGGGTGAAACGAAAAATTTTGTGTAGAATTTTTATAATTTT
GTAAATGTTATAAAAGTTCACTAATCTAACAGCACTAATTGATACTAATT
TAAAAAGTCATAATTTATTTATTTAAAATCCTGGTCTTGCTGTCGCCTAA
ACTAAAGGCAACCCTGTGTCACAGAACCGTTTGGACCCCAGCCCCATTTG
GCAAAAATTTCGTCTCTGGTGGTGGAAAAATACCCTAGAATTTCAGCCCC
ACTGGGAAATTCAGTGTTTAAAAATTGCGCTTCAAAACCG

Coding sequence (CDS) from alignment at sc0000168:449803..453242-

>TCONS_00013517 ID=TCONS_00013517|Name=TCONS_00013517|organism=Clytia hemisphaerica|type=CDS|length=4350bp|location=Sequence derived from alignment at sc0000168:449803..453242- (Clytia hemisphaerica)
TTATTTGGTGATAACTTGGTTGGATTTGCAAACTGTGTATTGTTTTGTTT
CCTAACAGTGAAAATTCGAAGACATTTAAAAAGTTCGTTGTCTCGAATGT
ACATCAAATGTCGGACATGTTACCGGCCAGACGAGTTTAGTTATATGGAT
ATTTCTTCGGATGGAGAATTAAGTGAAGATATGTCACTTTCTTCTACATG
AATTCGAAAATTTGAACGTAGTGAATCATTCAACGAAAACTTGACACGTT
TCTCACTTAAAGCAGCCAAACAGGTGGACAAAAAGATCATTCTAGTACCT
ATTGTTTACATATTGTTACGCATTTGGGGTACGGTGCGTTTCTTCATGTT
TATAGCTGGTACGGATGATAAGAAATATAGAGTTGTAGCTGACGTCTTCA
TAGTTTTACAACTCATGCAACATTATGGATGTTTTTGGACGGCAAGGGTT
TGGAGTTGTTAACATACATCGTTATTATAGTGCTTTATACTAAACTAAAA
TGGCATCTTCAACGAAAGAGAGAAGCCATCTTTAGCCATTCGATTGATTC
ATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTATTCATCAATTTG
TTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGATTCAGCGTCTGC
TGGATGGTGCTGGATTCGAATGGATGATGGAACAAACGAACAATTTTGTA
AATGAAAATGAAAAAGAACAAAAGAAGGTAACAAATAGAAGAAGATTTCA
TAAGAAAATAAAGATGGCTGCGAATGACATGCTCAGTGAATTATTCAAAT
TTCATGCACAAATCATCATCGTCCTTACCTGCAGTCTATCCATTCTTGGT
AGTATCCTTATCATCACAACTTATTTGGTGATAACTTGGTTGGATTTGCA
AACTGTGTATTGTTTTGTTTCCTAACAGTGAAAATTCGAAGACATTTAAA
AAGTTCGTTGTCTCGAATGTACATCAAATGTCGGACATGTTACCGGCCAG
ACGAGTTTAGTTATATGGATATTTCTTCGGATGGAGAATTAAGTGAAGAT
ATGTCACTTTCTTCTACATGAATTCGAAAATTTGAACGTAGTGAATCATT
CAACGAAAACTTGACACGTTTCTCACTTAAAGCAGCCAAACAGGTGGACA
AAAAGATCATTCTAGTACCTATTGTTTACATATTGTTACGCATTTGGGGT
ACGGTGCGTTTCTTCATGTTTATAGCTGGTACGGATGATAAGAAATATAG
AGTTGTAGCTGACGTCTTCATAGTTTTACAACTCATGCAACATTATGGAT
GTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACATCGTTATTATAG
TGCTTTATACTAAACTAAAATGGCATCTTCAACGAAAGAGAGAAGCCATC
TTTAGCCATTCGATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTA
TACCTTTATTCATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGAT
AATTATGATTCAGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGG
AACAAACGAACAATTTTGTAAATGAAAATGAAAAAGAACAAAAGAAGGTA
ACAAATAGAAGAAGATTTCATAAGAAAATAAAGATGGCTGCGAATGACAT
GCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATCGTCCTTACCT
GCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAACTTATTTGGTG
ATAACTTGGTTGGATTTGCAAACTGTGTATTGTTTTGTTTCCTAACAGTG
AAAATTCGAAGACATTTAAAAAGTTCGTTGTCTCGAATGTACATCAAATG
TCGGACATGTTACCGGCCAGACGAGTTTAGTTATATGGATATTTCTTCGG
ATGGAGAATTAAGTGAAGATATGTCACTTTCTTCTACATGAATTCGAAAA
TTTGAACGTAGTGAATCATTCAACGAAAACTTGACACGTTTCTCACTTAA
AGCAGCCAAACAGGTGGACAAAAAGATCATTCTAGTACCTATTGTTTACA
TATTGTTACGCATTTGGGGTACGGTGCGTTTCTTCATGTTTATAGCTGGT
ACGGATGATAAGAAATATAGAGTTGTAGCTGACGTCTTCATAGTTTTACA
ACTCATGCAACATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTT
AACATACATCGTTATTATAGTGCTTTATACTAAACTAAAATGGCATCTTC
AACGAAAGAGAGAAGCCATCTTTAGCCATTCGATTGATTCATCCATGGTT
TCACTTGATATCCTGGCTTATACCTTTATTCATCAATTTGTTAGCGTTAT
TTCTTAGGAAGTTAGGCGATAATTATGATTCAGCGTCTGCTGGATGGTGC
TGGATTCGAATGGATGATGGAACAAACGAACAATTTTGTAAATGAAAATG
AAAAAGAACAAAAGAAGGTAACAAATAGAAGAAGATTTCATAAGAAAATA
AAGATGGCTGCGAATGACATGCTCAGTGAATTATTCAAATTTCATGCACA
AATCATCATCGTCCTTACCTGCAGTCTATCCATTCTTGGTAGTATCCTTA
TCATCACAACTTATTTGGTGATAACTTGGTTGGATTTGCAAACTGTGTAT
TGTTTTGTTTCCTAACAGTGAAAATTCGAAGACATTTAAAAAGTTCGTTG
TCTCGAATGTACATCAAATGTCGGACATGTTACCGGCCAGACGAGTTTAG
TTATATGGATATTTCTTCGGATGGAGAATTAAGTGAAGATATGTCACTTT
CTTCTACATGAATTCGAAAATTTGAACGTAGTGAATCATTCAACGAAAAC
TTGACACGTTTCTCACTTAAAGCAGCCAAACAGGTGGACAAAAAGATCAT
TCTAGTACCTATTGTTTACATATTGTTACGCATTTGGGGTACGGTGCGTT
TCTTCATGTTTATAGCTGGTACGGATGATAAGAAATATAGAGTTGTAGCT
GACGTCTTCATAGTTTTACAACTCATGCAACATTATGGATGTTTTTGGAC
GGCAAGGGTTTGGAGTTGTTAACATACATCGTTATTATAGTGCTTTATAC
TAAACTAAAATGGCATCTTCAACGAAAGAGAGAAGCCATCTTTAGCCATT
CGATTGATTCATCCATGGTTTCACTTGATATCCTGGCTTATACCTTTATT
CATCAATTTGTTAGCGTTATTTCTTAGGAAGTTAGGCGATAATTATGATT
CAGCGTCTGCTGGATGGTGCTGGATTCGAATGGATGATGGAACAAACGAA
CAATTTTGTAAATGAAAATGAAAAAGAACAAAAGAAGGTAACAAATAGAA
GAAGATTTCATAAGAAAATAAAGATGGCTGCGAATGACATGCTCAGTGAA
TTATTCAAATTTCATGCACAAATCATCATCGTCCTTACCTGCAGTCTATC
CATTCTTGGTAGTATCCTTATCATCACAACTTATTTGGTGATAACTTGGT
TGGATTTGCAAACTGTGTATTGTTTTGTTTCCTAACAGTGAAAATTCGAA
GACATTTAAAAAGTTCGTTGTCTCGAATGTACATCAAATGTCGGACATGT
TACCGGCCAGACGAGTTTAGTTATATGGATATTTCTTCGGATGGAGAATT
AAGTGAAGATATGTCACTTTCTTCTACATGAATTCGAAAATTTGAACGTA
GTGAATCATTCAACGAAAACTTGACACGTTTCTCACTTAAAGCAGCCAAA
CAGGTGGACAAAAAGATCATTCTAGTACCTATTGTTTACATATTGTTACG
CATTTGGGGTACGGTGCGTTTCTTCATGTTTATAGCTGGTACGGATGATA
AGAAATATAGAGTTGTAGCTGACGTCTTCATAGTTTTACAACTCATGCAA
CATTATGGATGTTTTTGGACGGCAAGGGTTTGGAGTTGTTAACATACATC
GTTATTATAGTGCTTTATACTAAACTAAAATGGCATCTTCAACGAAAGAG
AGAAGCCATCTTTAGCCATTCGATTGATTCATCCATGGTTTCACTTGATA
TCCTGGCTTATACCTTTATTCATCAATTTGTTAGCGTTATTTCTTAGGAA
GTTAGGCGATAATTATGATTCAGCGTCTGCTGGATGGTGCTGGATTCGAA
TGGATGATGGAACAAACGAACAATTTTGTAAATGAAAATGAAAAAGAACA
AAAGAAGGTAACAAATAGAAGAAGATTTCATAAGAAAATAAAGATGGCTG
CGAATGACATGCTCAGTGAATTATTCAAATTTCATGCACAAATCATCATC
GTCCTTACCTGCAGTCTATCCATTCTTGGTAGTATCCTTATCATCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007547XLOC_007547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013517-exon-sc0000168-1575043694:453050..453242TCONS_00013517-exon-sc0000168-1575043694:453050..453242Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1575043694:452655..452815TCONS_00013517-exon-sc0000168-1575043694:452655..452815Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1575043694:452196..452302TCONS_00013517-exon-sc0000168-1575043694:452196..452302Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1575043694:451598..451807TCONS_00013517-exon-sc0000168-1575043694:451598..451807Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1575043694:449803..450600TCONS_00013517-exon-sc0000168-1575043694:449803..450600Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1510915933:453050..453242TCONS_00013517-exon-sc0000168-1510915933:453050..453242Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1510915933:452655..452815TCONS_00013517-exon-sc0000168-1510915933:452655..452815Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1510915933:452196..452302TCONS_00013517-exon-sc0000168-1510915933:452196..452302Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1510915933:451598..451807TCONS_00013517-exon-sc0000168-1510915933:451598..451807Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1510915933:449803..450600TCONS_00013517-exon-sc0000168-1510915933:449803..450600Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1491911889:453050..453242TCONS_00013517-exon-sc0000168-1491911889:453050..453242Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1491911889:452655..452815TCONS_00013517-exon-sc0000168-1491911889:452655..452815Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1491911889:452196..452302TCONS_00013517-exon-sc0000168-1491911889:452196..452302Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1491911889:451598..451807TCONS_00013517-exon-sc0000168-1491911889:451598..451807Clytia hemisphaericaexon
TCONS_00013517-exon-sc0000168-1491911889:449803..450600TCONS_00013517-exon-sc0000168-1491911889:449803..450600Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013517-proteinTCONS_00013517-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:449803..453242 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13838	0.212048	9.82909e-09	0.660701	0	0	0	0.606651	0.592558	0.12416	1.42223	0	0.382504	0	0	0	0.855676	0.658872	0	0	0	3.24887e-07	0	0	4.88171e-05	0	0.0123083	4.40888e-06	1.3477	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017981GPCR_2-like
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007166cell surface receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
[Close]
BLAST of TCONS_00013517 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.042e-25
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 3 
Query:  234 FHLISWLIPLFINLLALFLRKLGDNYDSASAGWCWIRMDDAHATLWMFLDGKGLELLTYIVIIVLYTKLKWHLQRKIRKFERSESFNENLTRFSLKAAKQVDKKIILVPIVYILLRIWGTVRFFMFIAGTDDKKYRVVADVFIVLQLFGDNLVGFANCVLFCFLTVKIRRHL 749
            FH++SW +PL I + A+ L+K+G +    S GWCWI ++     LWM L GK  E+L Y+++ +LY  ++ H+ R                R  L+ +   DKK++L+P+++I LR+W TVRF + + G+      V   V +VL   G+   G ANC++F   T  +R  L
Sbjct:  124 FHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAKDHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTALSEYRPILSQEHRL-LRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSP----AVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRL 290
The following BLAST results are available for this feature:
BLAST of TCONS_00013517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1571.042e-2534.30G-protein coupled receptor 157 OS=Homo sapiens GN=... [more]
back to top