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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013392 ID=TCONS_00013392|Name=TCONS_00013392|organism=Clytia hemisphaerica|type=transcript|length=2715bpRun BLAST on NCBI protein sequence of TCONS_00013392-protein >TCONS_00013392-protein ID=TCONS_00013392-protein|Name=TCONS_00013392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp MSKREDIAALQFELTKINDELNSINDQMKNLLVRQEELRHRKKKLSKELLRun BLAST on NCBI transcript from alignment at sc0000167:341646..351226+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013392 ID=TCONS_00013392|Name=TCONS_00013392|organism=Clytia hemisphaerica|type=transcript|length=9581bp|location=Sequence derived from alignment at sc0000167:341646..351226+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:341646..351226+ >TCONS_00013392 ID=TCONS_00013392|Name=TCONS_00013392|organism=Clytia hemisphaerica|type=CDS|length=19980bp|location=Sequence derived from alignment at sc0000167:341646..351226+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013392 vs. Swiss-Prot (Human)
Match: RECQ1 (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3) HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0 Identity = 289/577 (50.09%), Postives = 398/577 (68.98%), Query Frame = 1
Query: 79 IAALQFELTKINDELNSINDQMKNLLVRQEELRHRXXXXXXXXXX------XXXTQQNDILKFQWDSDNFEWSESMKTTMKEKFKIENFRPLQKQTMNVTMSNYDCMLIMPTGGGKSLCFQLPAVVSNGFTLVISPLISLMEDQLMALDRLGINAALLSSSIPTKDVTIIQNLLVDKECPYKLVYVTPERIAKSKRFMAKLEKAYAVGNVSRIVIDEVHCASHWGHDFRPDYKVLGILKRQFPKLPILGLTATATKKVLDDVKEMLNLDRTCMVFRASFNRPNLFYEVHQTCLDSKDLIKEVSNVIKRRFKAMSGIIYCFSRKDSEEVAHGLKERGITAHCYHADLDPKLKSYIHQQWTNGEIQVVVATIAFGMGIDKPNVRFVIHFSISKSIENYYQESGRAGRDDQKAWCILYFRFQDIFRQSSMVFTEKMGLHNLYLMINYCLNKTTCRRKQIGLFFSENWEANQCKETCDVCFEKAETKDLILNKDALNLLDILENAKYKQERLTPLKLVELWLGKGKVSLRKKQA---SYPKEICELIVAKLIAEQILTEDFHFTPYNTITYILPGPRKHLV 1782
++AL EL I EL+++ Q++ L RQ+EL +KK L+K++ + + + D W+ ++F WS +K ++ FK+E FRPLQ +T+NVTM+ + L+MPTGGGKSLC+QLPA+ S+GFTLVI PLISLMEDQLM L +LGI+A +L++S + V + +V+K KL+YVTPE+IAKSK FM++LEKAY +RI +DEVHC S WGHDFRPDYK LGILKRQFP ++GLTATAT VL D +++L +++ C F ASFNRPNL+YEV Q +++D I+++ +I R+K SGIIYCFS+KDSE+V L+ GI A YHA+L+P+ K+ +H++W+ EIQVVVAT+AFGMGIDKP+VRFVIH S+SKS+ENYYQESGRAGRDD KA CILY+ F DIFR SSMV E +G LY M++YC N + CRR + F E W + C + CD C + + + + + +L+ IL+ A+ E+LTPLKL++ W+GKG LR + P+E E I+A + +Q L ED+ FT Y TI+Y+ GP+ +L+
Sbjct: 4 VSALTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK-CFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLL 579 The following BLAST results are available for this feature:
BLAST of TCONS_00013392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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