TCONS_00012775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012775
Unique NameTCONS_00012775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012775 ID=TCONS_00012775|Name=TCONS_00012775|organism=Clytia hemisphaerica|type=transcript|length=2521bp
GCATTATTGATTGGTCATCAGTTGGagaaagttattgattgtatcaAGTG
GGAGAGTCCAACCCTGGAAAAATACCTTGTTATACTACCTACTGTAAACT
CGTCTAATCTCAACATTTTCTCAACATTTTACCCAATTTACCTTCCAAAT
ACCAAAATTCTAATACTGGGTGCAAAcactgtattttttaatatcaCCTG
AGATCAaaaatttagataaaaaattaccTATGCTatatgacaaggatctt
gtttgctaaatttcatccaaaaagacacactagatcaaaagttaaggggt
ggtacaggaacccccccccccctagttttcAACCGCctctaaaagcctag
tatgaatagggttaaggtttttaaaaaaatgtggtCGGGCCAAGGAATGA
ATTGCAAAATAAATGGAAGACTtaccaacaaatttttttgggttTATCTT
TCCTCATTCCAATAGATGATAATTCATTCTTTTCTAACTCATAGAACTTG
AGATTTACTTCAAAAAGTGAGAAActattttattatattatagTGAAAGA
TGGCAAACGCTAACTGGGTTCAGATGTTGCTGCGAATCCCAATCATATTC
TTGTTGGATTACAGTTTTTCATTCATGTATGATTATTTGACAAACTTGAT
GCCTTGGTATTGTGCTCTGATGACACAAGGattttGGGTGATATGTCTTG
TCATTGTGTTACATTCAACAAACAGTCAGCTCTTCACCATGTATTACTTT
GGagtgtttttgtttcatttgacAGTTGTTCTCTATGTAAACATTTGGAA
GTCTCCATTCGTTACTGAAAACGAAATGTCTTTCATAGAGCTACTCAACC
CTTATTCGTCATATTTTCCACTGCAACCATTACTTGTTTCTTGGTTCATT
TACTCTATTTCCATCATATTGTATGCACTATCATTCCGATCTATAAAACC
AGTCCTCATGGTAGCTGCATTGATCCCACTCTATGCAAGGCATATCAACA
AAAACCATCGAGATGCTTCTTTCTTTGAAAGCGCTGCTTTCGGCGTTGCA
ATATTCATTATCTTACAAACATGTTATAAAATGACTATTCAACTGAAAGA
GCTGGTTGAACATCAGATAAGAATGAATTTGTTTCGGTATCGAATGTATG
GCTCCTTAGTCTTGTTCTATTTACAATGGAGAAGATTACAACTGAATTTT
GTTCTGTCGATTTACTGGTTTATCATATGGAACTATCAAATGATTGTATT
CACAATTTTCGTGGAAGAGCAGTTTCATGCATCGTTCATTCTAGCATGCG
CGTCTTATGCATGCAATTCATTCATCAAAATCGTATCATTATGTTATGTT
GTCCAACATGCTGTTAAAATCCTTTTGAATGTGGTACAGCAATTTGTTAA
AGACGACCACACGATGATCGATGAAGGTCAATACAGACCGTCTGGATTAC
GAGAAAGCGTGGGATTTCTGGTGCTCAGTTTATACACAAATCTAACATCA
ATGAACGCTTCAAAGAGgattgtattttttgaattgATCATGCTACTCTT
GGTGTCTGGTATTATAAGGTCTATTTTTGAAGTCATTGAACCTTACTTAT
TGTCGCTTAATGGTGCGATCACTTACAGCAAGAAAAGACACTTCCAACTT
GTAACGTTTTGTTTGACGCTGTTAGTAGCAGCTGCCTACATGGGGACTTA
TTTGTATCGTTTAAGAGGGAAGTTACCATTTTCGATACCTAATGTTATTA
CAGTGGCTCAAATAACTTGTGGATTGCTTTTATATTTGATGTACATGTAT
GACTCCTACCAAGGGGGCACTTGGGAACATTTAGATGATTGTGTCTACTA
TATCAAAGGAACATGCAGGACTTTTGAGTTTATTTTGATTGTTATTGTAC
TTGGTTATCGTGTTTTGGACACATCTTCAAAATGGACAGTATTCCAAGTT
GTAATGGTTGTTCTGCACCTGTATGTGAATGTTTATCTCTCACTCAAAGA
TGGTTGGCGCAGTGTAAGATTGCGTAGAAAAGTCAAccaaaaattaaaca
ttttacCTCAAGCATCTACTGAAAGACTGGCAGAAACCAGAGATGTTTGT
CCTATTTGTTTGGAAGAACTGAAAAGTGCAAGAGTGACGCCTTGTAATCA
TCTTTTTCATatgttttgtttgaaaaaatggctgaaCGTTCAAAATAAAT
GTCCGATGTGTCATGCTACAATTTTGGAGACTGATTCGTGATATTATGAC
CAATTGTGTTaattttcagtaattttagtttggtttttgttttatttgtt
aattttgtcaagaaatttttttaaatggaattttggttttgattcttttt
attgtaaattttcttaaaattgtctTTCTGAAAAAAGGTCGACGGCATTA
TGGGTAGGTTGAAGCTGTAACACTTTTTAGCCACAAAAagtaaaatatgt
aaaataatGTAGCGTGGTTAAAATATTTagtaatttgatttttgaaactA
TCTTTTAAATATCAATTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00012775-protein

>TCONS_00012775-protein ID=TCONS_00012775-protein|Name=TCONS_00012775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MANANWVQMLLRIPIIFLLDYSFSFMYDYLTNLMPWYCALMTQGFWVICL
VIVLHSTNSQLFTMYYFGVFLFHLTVVLYVNIWKSPFVTENEMSFIELLN
PYSSYFPLQPLLVSWFIYSISIILYALSFRSIKPVLMVAALIPLYARHIN
KNHRDASFFESAAFGVAIFIILQTCYKMTIQLKELVEHQIRMNLFRYRMY
GSLVLFYLQWRRLQLNFVLSIYWFIIWNYQMIVFTIFVEEQFHASFILAC
ASYACNSFIKIVSLCYVVQHAVKILLNVVQQFVKDDHTMIDEGQYRPSGL
RESVGFLVLSLYTNLTSMNASKRIVFFELIMLLLVSGIIRSIFEVIEPYL
LSLNGAITYSKKRHFQLVTFCLTLLVAAAYMGTYLYRLRGKLPFSIPNVI
TVAQITCGLLLYLMYMYDSYQGGTWEHLDDCVYYIKGTCRTFEFILIVIV
LGYRVLDTSSKWTVFQVVMVVLHLYVNVYLSLKDGWRSVRLRRKVNQKLN
ILPQASTERLAETRDVCPICLEELKSARVTPCNHLFHMFCLKKWLNVQNK
CPMCHATILETDS
Run BLAST on NCBI

transcript from alignment at sc0000156:38121..41469+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012775 ID=TCONS_00012775|Name=TCONS_00012775|organism=Clytia hemisphaerica|type=transcript|length=3349bp|location=Sequence derived from alignment at sc0000156:38121..41469+ (Clytia hemisphaerica)
GCATTATTGATTGGTCATCAGTTGGagaaagttattgattgtatcaAGTG
GGAGAGTCCAACCCTGGAAAAATACCTTGTTATACTACCTACTGTAAACT
CGTCTAATCTCAACATTTTCTCAACATTTTACCCAATTTACCTTCCAAAT
ACCAAAATTCTAATACTGGGTGCAAAcactgtattttttaatatcaCCTG
AGATCAaaaatttagataaaaaattaccTATGCTatatgacaaggatctt
gtttgctaaatttcatccaaaaagacacactagatcaaaagttaaggggt
ggtacaggaacccccccccccctagttttcAACCGCctctaaaagcctag
tatgaatagggttaaggtttttaaaaaaatgtggtCGGGCCAAGGAATGA
ATTGCAAAATAAATGGAAGACTtaccaacaaatttttttgggttTATCTT
TCCTCATTCCAATAGATGATAATTCATTCTTTTCTAACTCATAGAACTTG
AGATTTACTTCAAAAAGTGAGAAActattttattatattatagTGAAAGA
TGGCAAACGCTAACTGGGTTCAGATGTTGCTGCGAATCCCAATCATATTC
TTGTTGGATTACAGTTTTTCATTCATGTATGATTATTTGACAAACTTGAT
GCCTTGGTATTGTGCTCTGATGACACAAGGattttgtaagtttttttaat
tcCCTAAATTTTTTACTGGGTTGGAGCCAAACACTATTATAAGGGAAAGA
AGTAAAATcttcgcaaaaatttatttgaaattatcAAAACATATTTAGGC
TCCTCCCTTCTTTCTCTGTGGGGATCCAACTTTATTCAGCTTAGCTTACA
AACCTGATACAAACAAGCTAGTCAAACACCCAATCGATGGTGTATTCTCC
CTGGGTGTTTTCATGGGTATTAGATATAGCatcatttaaaaatttgaaat
cataaCATAAATCTAACTTGTGCAATACACTAAATTTGCCTTTTTATACC
TTGGCTTAATTTACAAATTCTTGCAGTGTCTTGAAAGCCCAATGGTTAGC
AAGTTGGGTTTTGATCGCTGATAAGAATAGTTTGGTGTTTTGACATAGAA
TGCTGTTTTCCAAAAATGGGGATGTCATGTGAAGGTAGTAGTTGGTAGTA
GTTGGtagttggtttgttttttttttttgtttttttttcttttttcttta
ttgaaacataaacacagggtacactacgaacatataatacaaaatactac
taaacattaatatagtccctccctccgctagaaacttaagttatatcgcc
agaggtaagGCTACGaagaaaggaaaaagtaaaacaaggtGTGACGTGGA
GAGAGCTATGGTTGTAGTAGACTAAAATAACGCACCACTGAACCTTCCAG
ATTCATGGATATATTCAACGAGTTGGTAGTTGGTTTTCTTTATATATCAT
ATCATATGTGTCTCAAATTGATTTACTAAACTTTTTTTGCATCTATATCA
TTTTTTCTTTCAGGGGTGATATGTCTTGTCATTGTGTTACATTCAACAAA
CAGTCAGCTCTTCACCATGTATTACTTTGGagtgtttttgtttcatttga
cAGTTGTTCTCTATGTAAACATTTGGAAGTCTCCATTCGTTACTGAAAAC
GAAATGTCTTTCATAGAGCTACTCAACCCTTATTCGTCATATTTTCCACT
GCAACCATTACTTGTTTCTTGGTTCATTTACTCTATTTCCATCATATTGT
ATGCACTATCATTCCGATCTATAAAACCAGTCCTCATGGTAGCTGCATTG
ATCCCACTCTATGCAAGGCATATCAACAAAAACCATCGAGATGCTTCTTT
CTTTGAAAGCGCTGCTTTCGGCGTTGCAATATTCATTATCTTACAAACAT
GTTATAAAATGACTATTCAACTGAAAGAGCTGGTTGAACATCAGATAAGA
ATGAATTTGTTTCGGTATCGAATGTATGGCTCCTTAGTCTTGTTCTATTT
ACAATGGAGAAGATTACAACTGAATTTTGTTCTGTCGATTTACTGGTTTA
TCATATGGAACTATCAAATGATTGTATTCACAATTTTCGTGGAAGAGCAG
TTTCATGCATCGTTCATTCTAGCATGCGCGTCTTATGCATGCAATTCATT
CATCAAAATCGTATCATTATGTTATGTTGTCCAACATGCTGTTAAAATCC
TTTTGAATGTGGTACAGCAATTTGTTAAAGACGACCACACGATGATCGAT
GAAGGTCAATACAGACCGTCTGGATTACGAGAAAGCGTGGGATTTCTGGT
GCTCAGTTTATACACAAATCTAACATCAATGAACGCTTCAAAGAGgattg
tattttttgaattgATCATGCTACTCTTGGTGTCTGGTATTATAAGGTCT
ATTTTTGAAGTCATTGAACCTTACTTATTGTCGCTTAATGGTGCGATCAC
TTACAGCAAGAAAAGACACTTCCAACTTGTAACGTTTTGTTTGACGCTGT
TAGTAGCAGCTGCCTACATGGGGACTTATTTGTATCGTTTAAGAGGGAAG
TTACCATTTTCGATACCTAATGTTATTACAGTGGCTCAAATAACTTGTGG
ATTGCTTTTATATTTGATGTACATGTATGACTCCTACCAAGGGGGCACTT
GGGAACATTTAGATGATTGTGTCTACTATATCAAAGGAACATGCAGGACT
TTTGAGTTTATTTTGATTGTTATTGTACTTGGTTATCGTGTTTTGGACAC
ATCTTCAAAATGGACAGTATTCCAAGTTGTAATGGTTGTTCTGCACCTGT
ATGTGAATGTTTATCTCTCACTCAAAGATGGTTGGCGCAGTGTAAGATTG
CGTAGAAAAGTCAAccaaaaattaaacattttacCTCAAGCATCTACTGA
AAGACTGGCAGAAACCAGAGATGTTTGTCCTATTTGTTTGGAAGAACTGA
AAAGTGCAAGAGTGACGCCTTGTAATCATCTTTTTCATatgttttgtttg
aaaaaatggctgaaCGTTCAAAATAAATGTCCGATGTGTCATGCTACAAT
TTTGGAGACTGATTCGTGATATTATGACCAATTGTGTTaattttcagtaa
ttttagtttggtttttgttttatttgttaattttgtcaagaaattttttt
aaatggaattttggttttgattctttttattgtaaattttcttaaaattg
tctTTCTGAAAAAAGGTCGACGGCATTATGGGTAGGTTGAAGCTGTAACA
CTTTTTAGCCACAAAAagtaaaatatgtaaaataatGTAGCGTGGTTAAA
ATATTTagtaatttgatttttgaaactATCTTTTAAATATCAATTAAAT

Coding sequence (CDS) from alignment at sc0000156:38121..41469+

>TCONS_00012775 ID=TCONS_00012775|Name=TCONS_00012775|organism=Clytia hemisphaerica|type=CDS|length=3384bp|location=Sequence derived from alignment at sc0000156:38121..41469+ (Clytia hemisphaerica)
ATGGCAAACGCTAACTGGGTTCAGATGTTGCTGCGAATCCCAATCATATT
CTTGTTGGATTACAGTTTTTCATTCATGTATGATTATTTGACAAACTTGA
TGCCTTGGTATTGTGCTCTGATGACACAAGGattttGGGTGATATGTCTT
GTCATTGTGTTACATTCAACAAACAGTCAGCTCTTCACCATGTATTACTT
TGGagtgtttttgtttcatttgacAGTTGTTCTCTATGTAAACATTTGGA
AGTCTCCATTCGTTACTGAAAACGAAATGTCTTTCATAGAGCTACTCAAC
CCTTATTCGTCATATTTTCCACTGCAACCATTACTTGTTTCTTGGTTCAT
TTACTCTATTTCCATCATATTGTATGCACTATCATTCCGATCTATAAAAC
CAGTCCTCATGGTAGCTGCATTGATCCCACTCTATGCAAGGCATATCAAC
AAAAACCATCGAGATGCTTCTTTCTTTGAAAGCGCTGCTTTCGGCGTTGC
AATATTCATTATCTTACAAACATGTTATAAAATGACTATTCAACTGAAAG
AGCTGGTTGAACATCAGATAAGAATGAATTTGTTTCGGTATCGAATGTAT
GGCTCCTTAGTCTTGTTCTATTTACAATGGAGAAGATTACAACTGAATTT
TGTTCTGTCGATTTACTGGTTTATCATATGGAACTATCAAATGATTGTAT
TCACAATTTTCGTGGAAGAGCAGTTTCATGCATCGTTCATTCTAGCATGC
GCGTCTTATGCATGCAATTCATTCATCAAAATCGTATCATTATGTTATGT
TGTCCAACATGCTGTTAAAATCCTTTTGAATGTGGTACAGCAATTTGTTA
AAGACGACCACACGATGATCGATGAAGGTCAATACAGACCGTCTGGATTA
CGAGAAAGCGTGGGATTTCTGGTGCTCAGTTTATACACAAATCTAACATC
AATGAACGCTTCAAAGAGgattgtattttttgaattgATCATGCTACTCT
TGGTGTCTGGTATTATAAGGTCTATTTTTGAAGTCATTGAACCTTACTTA
TTGTCGCTTAATGGTGCGATCACTTACAGCAAGAAAAGACACTTCCAACT
TGTAACGTTTTGTTTGACGCTGTTAGTAGCAGCTGCCTACATGGGGACTT
ATTTGTATCGTTTAAGAGGGAAGTTACCATTTTCGATACCTAATGTTATT
ACAGTGGCTCAAATAACTTGTGGATTGCTTTTATATTTGATGTACATGTA
TGACTCCTACCAAGGGGGCACTTGGGAACATTTAGATGATTGTGTCTACT
ATATCAAAGGAACATGCAGGACTTTTGAGTTTATTTTGATTGTTATTGTA
CTTGGTTATCGTGTTTTGGACACATCTTCAAAATGGACAGTATTCCAAGT
TGTAATGGTTGTTCTGCACCTGTATGTGAATGTTTATCTCTCACTCAAAG
ATGGTTGGCGCAGTGTAAGATTGCGTAGAAAAGTCAAccaaaaattaaac
attttacCTCAAGCATCTACTGAAAGACTGGCAGAAACCAGAGATGTTTG
TCCTATTTGTTTGGAAGAACTGAAAAGTGCAAGAGTGACGCCTTGTAATC
ATCTTTTTCATatgttttgtttgaaaaaatggctgaaCGTTCAAAATAAA
TGTCCGATGTGTCATGCTACAATTTTGGAGACTGATTCGTGAATGGCAAA
CGCTAACTGGGTTCAGATGTTGCTGCGAATCCCAATCATATTCTTGTTGG
ATTACAGTTTTTCATTCATGTATGATTATTTGACAAACTTGATGCCTTGG
TATTGTGCTCTGATGACACAAGGattttGGGTGATATGTCTTGTCATTGT
GTTACATTCAACAAACAGTCAGCTCTTCACCATGTATTACTTTGGagtgt
ttttgtttcatttgacAGTTGTTCTCTATGTAAACATTTGGAAGTCTCCA
TTCGTTACTGAAAACGAAATGTCTTTCATAGAGCTACTCAACCCTTATTC
GTCATATTTTCCACTGCAACCATTACTTGTTTCTTGGTTCATTTACTCTA
TTTCCATCATATTGTATGCACTATCATTCCGATCTATAAAACCAGTCCTC
ATGGTAGCTGCATTGATCCCACTCTATGCAAGGCATATCAACAAAAACCA
TCGAGATGCTTCTTTCTTTGAAAGCGCTGCTTTCGGCGTTGCAATATTCA
TTATCTTACAAACATGTTATAAAATGACTATTCAACTGAAAGAGCTGGTT
GAACATCAGATAAGAATGAATTTGTTTCGGTATCGAATGTATGGCTCCTT
AGTCTTGTTCTATTTACAATGGAGAAGATTACAACTGAATTTTGTTCTGT
CGATTTACTGGTTTATCATATGGAACTATCAAATGATTGTATTCACAATT
TTCGTGGAAGAGCAGTTTCATGCATCGTTCATTCTAGCATGCGCGTCTTA
TGCATGCAATTCATTCATCAAAATCGTATCATTATGTTATGTTGTCCAAC
ATGCTGTTAAAATCCTTTTGAATGTGGTACAGCAATTTGTTAAAGACGAC
CACACGATGATCGATGAAGGTCAATACAGACCGTCTGGATTACGAGAAAG
CGTGGGATTTCTGGTGCTCAGTTTATACACAAATCTAACATCAATGAACG
CTTCAAAGAGgattgtattttttgaattgATCATGCTACTCTTGGTGTCT
GGTATTATAAGGTCTATTTTTGAAGTCATTGAACCTTACTTATTGTCGCT
TAATGGTGCGATCACTTACAGCAAGAAAAGACACTTCCAACTTGTAACGT
TTTGTTTGACGCTGTTAGTAGCAGCTGCCTACATGGGGACTTATTTGTAT
CGTTTAAGAGGGAAGTTACCATTTTCGATACCTAATGTTATTACAGTGGC
TCAAATAACTTGTGGATTGCTTTTATATTTGATGTACATGTATGACTCCT
ACCAAGGGGGCACTTGGGAACATTTAGATGATTGTGTCTACTATATCAAA
GGAACATGCAGGACTTTTGAGTTTATTTTGATTGTTATTGTACTTGGTTA
TCGTGTTTTGGACACATCTTCAAAATGGACAGTATTCCAAGTTGTAATGG
TTGTTCTGCACCTGTATGTGAATGTTTATCTCTCACTCAAAGATGGTTGG
CGCAGTGTAAGATTGCGTAGAAAAGTCAAccaaaaattaaacattttacC
TCAAGCATCTACTGAAAGACTGGCAGAAACCAGAGATGTTTGTCCTATTT
GTTTGGAAGAACTGAAAAGTGCAAGAGTGACGCCTTGTAATCATCTTTTT
CATatgttttgtttgaaaaaatggctgaaCGTTCAAAATAAATGTCCGAT
GTGTCATGCTACAATTTTGGAGACTGATTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007172XLOC_007172Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012775-proteinTCONS_00012775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012775-exon-sc0000156-1491911889:38121..38805TCONS_00012775-exon-sc0000156-1491911889:38121..38805Clytia hemisphaericaexon
TCONS_00012775-exon-sc0000156-1510915933:38121..38805TCONS_00012775-exon-sc0000156-1510915933:38121..38805Clytia hemisphaericaexon
TCONS_00012775-exon-sc0000156-1575043694:38121..38805TCONS_00012775-exon-sc0000156-1575043694:38121..38805Clytia hemisphaericaexon
TCONS_00012775-exon-sc0000156-1491911889:39634..41469TCONS_00012775-exon-sc0000156-1491911889:39634..41469Clytia hemisphaericaexon
TCONS_00012775-exon-sc0000156-1510915933:39634..41469TCONS_00012775-exon-sc0000156-1510915933:39634..41469Clytia hemisphaericaexon
TCONS_00012775-exon-sc0000156-1575043694:39634..41469TCONS_00012775-exon-sc0000156-1575043694:39634..41469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:38121..41469 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.61595	5.6706	5.68144	4.56741	8.17399	5.60887	5.93827	6.16883	4.92726	5.4438	7.16674	3.84224	3.93933	3.24071	4.6797	4.94542	5.52934	5.73882	3.29585	4.60432	5.534	4.45057	12.0169	11.565	4.74409	6.01761	11.1728	7.05107	14.1915	14.021
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR025754TRC8_N_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00012775 vs. Swiss-Prot (Human)
Match: RN145 (RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.489e-41
Identity = 109/369 (29.54%), Postives = 198/369 (53.66%), Query Frame = 1 
Query: 1141 RMYGSLVLFYLQWRRLQLNFVLSIYWFIIWNYQMIVFTIFVEEQFHAS------FILACASYACNSFIKIVSLCYVVQHAVKILLNVVQQFVKDDHTMIDEGQYRPSGLRESVGFLVLSLYTNLTSMNASKRIVFFELIMLLLVSGIIRSIFEVIEPYLLSLNGAITYSKKRHFQLVTFCLTLLVAAAYMG----TYLYRLRGKLPFSIPNVITVAQITCGXXXXXXXXXDSYQGGTWEHLDDCVYYIKGTCRTFEFILIVIVLGYRVLDTS-SKWTXXXXXXXXXXXXXXXXXXXKDGWRSVRLRRKVNQKLNILPQASTERLAETRDVCPICLEELKSARVTPCNHLFHMFCLKKWLNVQNKCPMCH 2214
             +YG L L    W +L +  +  ++W +++  Q  +++ F      AS        L   +  C++   ++ L + V      +L + + +++     +++      G+ E V  L+L++ T L  +    R     +I+ ++V+ I++S+ E+ +P +L+L  +   S  +HF+ V+ CL LLV  AYM      + +     L     +++T  Q+   L +Y+++M + ++    E++DD +YY+ GT R  EF++ + V+ Y V +T   +WTV   +++ +H Y NV+L  + GW+S  LRR    K+  LP A+ E+L +  D+C IC +++KSA +TPC+H FH  CLKKWL VQ  CP+CH
Sbjct:  210 EVYGLLALGMSLWNQLVVPVLFMVFWLVLFALQ--IYSYFSTRDQPASRERLLFLFLTSIAECCSTPYSLLGLVFTVSFVALGVLTLCKFYLQGYRAFMNDPAMN-RGMTEGVTLLILAVQTGLIELQVVHRAFLLSIILFIVVASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMAYMICQFFHMDFWLLIIISSSILTSLQVLGTLFIYVLFMVEEFRKEPVENMDDVIYYVNGTYRLLEFLVALCVVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCH 575
The following BLAST results are available for this feature:
BLAST of TCONS_00012775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1458.489e-4129.54RING finger protein 145 OS=Homo sapiens GN=RNF145 ... [more]
back to top