TCONS_00012775-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012775-protein
Unique NameTCONS_00012775-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012775-protein ID=TCONS_00012775-protein|Name=TCONS_00012775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MANANWVQMLLRIPIIFLLDYSFSFMYDYLTNLMPWYCALMTQGFWVICL
VIVLHSTNSQLFTMYYFGVFLFHLTVVLYVNIWKSPFVTENEMSFIELLN
PYSSYFPLQPLLVSWFIYSISIILYALSFRSIKPVLMVAALIPLYARHIN
KNHRDASFFESAAFGVAIFIILQTCYKMTIQLKELVEHQIRMNLFRYRMY
GSLVLFYLQWRRLQLNFVLSIYWFIIWNYQMIVFTIFVEEQFHASFILAC
ASYACNSFIKIVSLCYVVQHAVKILLNVVQQFVKDDHTMIDEGQYRPSGL
RESVGFLVLSLYTNLTSMNASKRIVFFELIMLLLVSGIIRSIFEVIEPYL
LSLNGAITYSKKRHFQLVTFCLTLLVAAAYMGTYLYRLRGKLPFSIPNVI
TVAQITCGLLLYLMYMYDSYQGGTWEHLDDCVYYIKGTCRTFEFILIVIV
LGYRVLDTSSKWTVFQVVMVVLHLYVNVYLSLKDGWRSVRLRRKVNQKLN
ILPQASTERLAETRDVCPICLEELKSARVTPCNHLFHMFCLKKWLNVQNK
CPMCHATILETDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007172XLOC_007172Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012775TCONS_00012775Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR025754TRC8_N_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 516..555
e-value: 0.0086
score: 7.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 517..554
e-value: 5.1E-9
score: 46.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 517..555
score: 12.976
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 517..558
e-value: 8.1827E-12
score: 59.7668
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 504..559
e-value: 9.4E-18
score: 63.0
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 517..554
e-value: 1.2E-10
score: 40.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 507..560
IPR025754TRC8 N-terminal domainPFAMPF13705TRC8_Ncoord: 7..486
e-value: 1.9E-55
score: 188.6

Blast
[Close]
BLAST of TCONS_00012775-protein vs. Swiss-Prot (Human)
Match: RN145 (RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 7.627e-52
Identity = 109/369 (29.54%), Postives = 198/369 (53.66%), Query Frame = 0 
Query:  198 RMYGSLVLFYLQWRRLQLNFVLSIYWFIIWNYQMIVFTIFVEEQFHAS------FILACASYACNSFIKIVSLCYVVQHAVKILLNVVQQFVKDDHTMIDEGQYRPSGLRESVGFLVLSLYTNLTSMNASKRIVFFELIMLLLVSGIIRSIFEVIEPYLLSLNGAITYSKKRHFQLVTFCLTLLVAAAYMG----TYLYRLRGKLPFSIPNVITVAQITCGLLLYLMYMYDSYQGGTWEHLDDCVYYIKGTCRTFEFILIVIVLGYRVLDTS-SKWTVFQVVMVVLHLYVNVYLSLKDGWRSVRLRRKVNQKLNILPQASTERLAETRDVCPICLEELKSARVTPCNHLFHMFCLKKWLNVQNKCPMCH 555
             +YG L L    W +L +  +  ++W +++  Q  +++ F      AS        L   +  C++   ++ L + V      +L + + +++     +++      G+ E V  L+L++ T L  +    R     +I+ ++V+ I++S+ E+ +P +L+L  +   S  +HF+ V+ CL LLV  AYM      + +     L     +++T  Q+   L +Y+++M + ++    E++DD +YY+ GT R  EF++ + V+ Y V +T   +WTV   +++ +H Y NV+L  + GW+S  LRR    K+  LP A+ E+L +  D+C IC +++KSA +TPC+H FH  CLKKWL VQ  CP+CH
Sbjct:  210 EVYGLLALGMSLWNQLVVPVLFMVFWLVLFALQ--IYSYFSTRDQPASRERLLFLFLTSIAECCSTPYSLLGLVFTVSFVALGVLTLCKFYLQGYRAFMNDPAMN-RGMTEGVTLLILAVQTGLIELQVVHRAFLLSIILFIVVASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMAYMICQFFHMDFWLLIIISSSILTSLQVLGTLFIYVLFMVEEFRKEPVENMDDVIYYVNGTYRLLEFLVALCVVAYGVSETIFGEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKIKSLPIATKEQLEKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCH 575
The following BLAST results are available for this feature:
BLAST of TCONS_00012775-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1457.627e-5229.54RING finger protein 145 OS=Homo sapiens GN=RNF145 ... [more]
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