TCONS_00012730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012730
Unique NameTCONS_00012730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012730 ID=TCONS_00012730|Name=TCONS_00012730|organism=Clytia hemisphaerica|type=transcript|length=1676bp
GGAGGATTGGAGAGTTCTGATTTAAGTGTGCTATAAATAGATGTTTTTCT
CACTTATTTGCCATTTTCAATGCTTTCGTTAGACCACGAAACATTTACAA
CTTCAAAACGTTCTTTAGTTTTAGCAGaaataataaaaagtaaaataaag
atGACAGACTCTGCAAGATCACTTAACCTTTCGTCCGACATTCAACGAGC
CATCGAATTACTGGATGAACTAAGCCAAAGAAATGATCTACCagctcaaa
aaatgcaaaatctcAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTA
AAAGATGTTTACGAACAAGTTTACGAGACGGTAGATTTCAATACAAATGA
TGAAGTACGTGCGAACGCAACAGCAAAGGCAACAGTAGCGGCATTTGCAG
CGAGTGAAGGGCACGCACACCCAAGAATTGTTGAATTACCAAAAACTGAT
GAAGGATTAGGATTTAACGTTATGGGAGGACTGGAACAAAATTCACCAAT
TTACATTTCCAGAATTATCCCTGACGGTGTTGCTGATAGACATGGTGGTT
TGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGAACGTTGAGGGG
GAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAGGCTGTTGGAAGAGT
CAAACTTGTCGTTAAATATACTCCCCaagttcttGAAGAAATGGAGTCAC
GTTTTGATCGTAGAAAGAAATGAGCTAGTGAATAATTTCGTGAAGGGGTT
TTGTTGGCTATTTCTTGGAAGAGAAAGTTGGACTTGATTTTATAAGTTAT
AACATTTTTATAGTTTTCAAtctatttattagttttttttaaatcgcttt
TAGCTCTTTTTCATTCCCGTTGTGCGATTTGAAGTAGATTTATGAAGCTT
ACATTTCGTCGTATTTAATGCGCCGCTTCTAGCATTAACAGCGTATTACT
TTAAGTGCTGCGGACTCCACAAAAAATCTTCCACTAAAGTCCTAAATATA
GGACATTGTTTGGAAGAAAAATACCCAGCTGGTACAGAACGTTATTTTGA
CgtctttttaatgtttttagattttattgGAGTAAGATAGACATTTCGTC
CTAGTTGGGTAGGATAAGGACATGGCTTCGACaagttttttattctcttt
GGGGCTTCCTTTTTTTACTGAACAGTACTTTTTCTTGTTCATTGACAAGT
GTGAAAACAGCAATTTGATTAATCATGTTATTTTGAAGATACCACAGTTT
TTTACAAGAATGAGAAGGTATGCCTGCTTTTTTCTAGAGTTTTAAGCAAA
ACTTATGACCTGTCAATATTTTAacttttccattatttttacgaATTATG
AAATCATAGAACATGTTTTATATTTAGATAGCATTTTTTCTTTCAGCTGT
CTAGATGTCGATTTCTAGAAGCTTTCTTGAAACACTGCACTGCAATCTAT
AATTATACTTGAAGCTTTAAATAGCAGTAAATACATTTCTCGAATCTGGG
TCCAATAACATTAAACACCTTTAAAGTTGGATTTTAGGTTAGAGACTTGA
ATCTTTATATTTGATAAAGTCATtgagttttgataaaatctgatacattt
tttaaaatttacattCTAACATCGGGCCTCTTACAAAAGTAACCTCcata
tttttatctttattcATCTGCAAGCC
Run BLAST on NCBI

protein sequence of TCONS_00012730-protein

>TCONS_00012730-protein ID=TCONS_00012730-protein|Name=TCONS_00012730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MLSLDHETFTTSKRSLVLAEIIKSKIKMTDSARSLNLSSDIQRAIELLDE
LSQRNDLPAQKMQNLKSVLESHFCQSVKDVYEQVYETVDFNTNDEVRANA
TAKATVAAFAASEGHAHPRIVELPKTDEGLGFNVMGGLEQNSPIYISRII
PDGVADRHGGLKRGDQLLAVNGVNVEGEHHEKAVDLLKEAVGRVKLVVKY
TPQVLEEMESRFDRRKK
Run BLAST on NCBI

transcript from alignment at sc0000147:220729..226333-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012730 ID=TCONS_00012730|Name=TCONS_00012730|organism=Clytia hemisphaerica|type=transcript|length=5605bp|location=Sequence derived from alignment at sc0000147:220729..226333- (Clytia hemisphaerica)
GGAGGATTGGAGAGTTCTGATTTAAGTGTGCTATAAATAGATGTTTTTCT
CACTTATTTGCCATTTTCAATGCTTTCGTTAGACCACGAAACATTTACAA
CTTCAAAACGTTCTTTAGTTTTAGCAGAAATAATAAAAAGTAAAATAAAG
ATGACAGACTCTGCAAGATCACTTAACCTTTCGTCCGGTAAGATTCTACT
ATTTTGTTAATTTTACTTGCTTCTACAATTCTATTTTCCGTTTTTAACTA
ACACAGCAATTCATGGAAACTACTGTGATCCTGTGGGGACCCTACTCCCT
TATGTTTTCACTTCACTCCGTTATATATTGAAATCTGAAAGAATCCAATG
ATTGTCTAAACTAATTCTAAATAAAATAAGATTACTTTGATTCATTTTTA
ATTTCTGAAACCTGCTTTTTTATTTAGACATTCAACGAGCCATCGAATTA
CTGGATGAACTAAGCCAAAGTATGTGAATTTCATTTTTAATAAACTCTTT
ATTTATAAGACTGCTGTCGGGACCTGGAAAACCTTGAAAATGAACCTTTT
AAACACTCAAAAATCTTAAAATATTTAAATTTGCTGGGCAAATCTTTTAA
ACAATGTTCTATTCACAATTCTTTTGTACTGGCATAATTCTCTCCCTTTT
CAAGAGAAAACTTCATATGATTAGGTGCCACTTACGCACACTTACGCTCT
TCACACTCTTCACGCTCTTCACTTTAGGCTGTTGGCCTGTTAGTTTTCTA
CGGAAAAAAAAAGGAACAAAATCTGACATCTGGCAATCTCGACATTTTGA
TTAAAGGGTGTCATCAGCGATTTGCTTGACGGCATGATTATATTTTGTCA
CGTAAACTAAAATAAACTTTTAAACCATTTTTCTCTTTTTCTTTATCTTG
TAGGAAATGATCTACCAGCTCAAAAAATGCAAAATCTCAAATCGGTTTTG
GAAAGTCACTTTTGCCAAAGTGTAAAAGATGTAAGTGTTATACATTGTTA
TGAAACATTTTTTGTCTCTCCTTTGTCAAAAGCCTGTTTATTTATTGCCT
TATTTGGCGAATTGCCTTCATTGAAAAATCTTAAACATTACATTGGGCGT
GGTGGACGTACTAAAGACGTTACCGCCTAATGAAAAATCCAAGGACATCT
GTTATATGAACACGATACTTCAAGATACTTCTCTGAAAAATATTTTCGTA
GGTTTACGAACAAGTTTACGAGACGGTAGATTTCAATACAAATGATGAAG
TACGTGCGAACGCAACAGCAAAGGTATGTTTTGACGTCTATAACATTCAC
TACGTACAAGCACTATACGAAAATATTATTAGGTATATTCTTCCCCAAAA
CTTGACGATTTTAGTTTCTGCTCAGCTTAGAATCCCTAAAGAGTCTTGTA
GAAAAAAACTGTTGTAATACTGCCACGTGCATATGATCTACTTAGCCTTC
GGATTGGTTGAAAACAGTGCAAGAGTGTTTATCATAGTACATAAACTTGT
CTTTGATAACATTTCTGTTTTTTTTGTTATTATCGGTCTGGCTGATTTCA
TGGTAAAAAAGGACAAGTTAAAAGTCTCTAAGAAGCTTATTTTTGACCAA
TTTGTTTCTTTAGTTTTTATAACTCGAAATAATTATATCTAGGCAACAGT
AGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTTGAAT
TACCAAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACTGGAA
CAAAATTCACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTGCTGA
TAGGTATATACGCTTTTAATTAAGAACCCGTAAAGTTTGATCTCATAATA
AATCATTCCTTCGGCCATTCTGCTTACACCACGCTCTGCTTAAGGAAGGT
GGCGAATGTGTTGATATGACCTGGTTGATTAAACAAACATTTGAACAAAC
GTTGCCTTTTGCTGATTCTCTAAGCCTTAGAGTGCACACATGTCAGCGTG
AAGTAACCAGAATCTGCCCGGAGATGAGTAAATTTTGGTTCAAATACGAC
TCTTTTTATTTTTACGAAAAAGTTAAGATGAAATGTTCATTTATAATGAA
CATTATGCTCATTATGCTCTTTTTAGATGGAATTTACCCGAATCATGGTC
CATAACCATATGAAACTCACCAAAAGTAGACTCTGATACTAATGAATTAG
CCGTAAAAGTAGCATGGCTTGTAACGGCCCTCGCTTTTATTACTTACACA
TTTTCCTTTACACTAATTTAGACATGGTGGTTTGAAACGTGGCGATCAAC
TGCTTGCAGTAAATGGTGTGGTAAGGGCATTTATTGTTTTCTTTTTTTAC
TGTCAGTACCAGAGCAACTAAAGTGTTTGAATGAAATGATGAGATGCAAA
TTGGTTTTTGAGCAGAGGCTTGAAAAACTTTAACATTTAACTTTATTCAA
CAAAATCATCTCAAAACAGGATTTTATCCAGCGTATCTAATTATCAAACT
CCAATAAACGTCCTTATACTTAACGCCCATAACGCCCCTTATTATTACAG
CACACTAAAAATGGAATCTCTTGAATTCANCGTGGTAAGGGCATTTATTG
TGTTGTTTTTTTATTGTCTGTACCAGAGCAACTAAAGTATTCAAATGAAA
TGACGAAAACCTTTCACCTTTAACTTTATTCAATCTACACAATCATTTCG
AGTCAGGATTTATCCAGCGTATCAAATTATCAATCGCCAATAAACGTCCT
TTATACTTATAACGCCCCTTATTATCACAGCATACTAAAAATGGAATCTC
TTCAATCCATTTTTCAATTTCCTTTTTTTTTGTAGAACGTTGAGGGGGAG
CACCACGAGAAAGCTGTAGATTTATTGAAAGAGGCTGTTGGAAGAGTCAA
ACTTGTCGTTAAATATACTCCCCAAGGTATTTTATGAAATTGTTTACACA
ATTGTTCTTGATTATCTTCAGCGGATGTCTTGCGGACATGCAATGGTCAC
GTTTTAACACCAACATCTCTAATGAGGACTCACGTGACCTTTGCATTACT
AATAATACATTGCTTTACTGACAGACCTTCGTACTTCGAATTGCTCTGCA
CGTGTTTAAAAAATATTGTTTCGAAAATTCGTCAATTCGACAAATATAAT
GCTCTGTGTAAGCGCTCTATTTTACATCCGGGAAAGAAAAAGTCCCTATA
ATTTCGAGTCCCTTTAGCTTCAAAAGATTTTCTTCTGGGCCAGATTATTC
TAAAAAAAAAAGTGAAGACCAAAAACAAAATTTTGTTCATCCTTGACGTT
TCGATATTTCTTGTATCATGATCATTGTAAGCTAACATTTGCTTGTGATC
ATGATACAAGAAGTATCGAAACGTCAAGGATGAACAAGATTTTGTTTTTT
GTCTTCCCTTTAGCTTATACTTTTCCTATAAAGTTTATTCAACTTTAAAA
TAATATTCTTTAAGAAGAAAAGAGGAAATTATACTAAATTACTAAAACTG
TGACTTCGAGACAAAATATTGGGGTAAAAAGTTTGTAATATGTCTTTTAT
GGGGAAAGAGACACCTCGTTGAAAAACAAGGGAAAAAGGGGAAATGAAAG
TTTTACTTTCTTTTTGTCCTGGAATTAGGATACTCACAATACAGATAGGT
TTAGGCTAGTTTTCTTTATTATTTGGGGGACTCTTTTGGGGGGTTTTCGT
GTAGCAATTTCTGTTTTTCTTTCTCCCAATAACTTTCAAATATATTTTTC
GTTTACTTTTTTTTTCAGTTCTTGAAGAAATGGAGTCACGTTTTGATCGT
AGAAAGAAATGAGCTAGTGAATAATTTCGTGAAGGTAAATTTCATTTTGC
TCAATGATATTGTGTACACCTATCAGCCCTTATCACTTAACAAGGGAATT
GGGATCAGCTTACAATGGTTAAATGGCGTCATAGTTCTACCTGTGTGCTC
GTCATTAGGTCATTTCACGGTCGAAATAAATAAATAAATTTCAAACCAAT
AGACCTTTTCATAAATTACGTCACGAACATCACTTACCTCATTTTGAAAT
TATTGCCATTGTGATTAACTCCCAGCGGATTTTATTAAAACTACTTTCTT
AAGAAAAATCATGAATGTCATCAATGTCTCAAGGGACAATATCACCATGG
AAATTGTTTGAATACGAGGCAAGTGATGTTCGTGACATAATTTATGAAAA
GGTCTATGGGAGGCCGTTTTGGGGCTAAAATAGTCCTAATTATAAATTCA
TGATTCTTCATTTCGACTGTGAAATTGCCCTTTGACCCTCATATACTTAT
CCCTCTTTGAAAAACTTTCTGGTGAAAGGATTGATAAAGTGCAGTTAATA
AACCTTGCGTCTGTATAGCCCTCCACTACGTATTTAAAATTCTAGTAATA
TTCTTTTCACACCTCATTTTTCTACAGTTGTCACGATTTACTTCACGACT
TGTCAACAGGCTTTTTCTAGTCACCGAAATGTCTCATAACCAACACAATT
ATTCGTTTGTTGTCTGTTCTTTACCTTGCAAGGGTAATGCGTGATTTTTG
CATTACAGTGATAAGGCTCAAAGAGCAAACTGCTGCTCGTAATACTGTTT
ATACTTAGGCTACGTGGTAATGACACACCTTTTTTGTATGTAATTATTTT
AAAATGTTCTTCCCTACCTTGCAGGGGTTTTGTTGGCTATTTCTTGGAAG
AGAAAGTTGGACTTGATTTTATAAGTTATAACATTTTTATAGTTTTCAAT
CTATTTATTAGTTTTTTTTAAATCGCTTTTAGCTCTTTTTCATTCCCGTT
GTGCGATTTGAAGTAGATTTATGAAGCTTACATTTCGTCGTATTTAATGC
GCCGCTTCTAGCATTAACAGCGTATTACTTTAAGTGCTGCGGACTCCACA
AAAAATCTTCCACTAAAGTCCTAAATATAGGACATTGTTTGGAAGAAAAA
TACCCAGCTGGTACAGAACGTTATTTTGACGTCTTTTTAATGTTTTTAGA
TTTTATTGGAGTAAGATAGACATTTCGTCCTAGTTGGGTAGGATAAGGAC
ATGGCTTCGACAAGTTTTTTATTCTCTTTGGGGCTTCCTTTTTTTACTGA
ACAGTACTTTTTCTTGTTCATTGACAAGTGTGAAAACAGCAATTTGATTA
ATCATGTTATTTTGAAGATACCACAGTTTTTTACAAGAATGAGAAGGTAT
GCCTGCTTTTTTCTAGAGTTTTAAGCAAAACTTATGACCTGTCAATATTT
TAACTTTTCCATTATTTTTACGAATTATGAAATCATAGAACATGTTTTAT
ATTTAGATAGCATTTTTTCTTTCAGCTGTCTAGATGTCGATTTCTAGAAG
CTTTCTTGAAACACTGCACTGCAATCTATAATTATACTTGAAGCTTTAAA
TAGCAGTAAATACATTTCTCGAATCTGGGTCCAATAACATTAAACACCTT
TAAAGTTGGATTTTAGGTTAGAGACTTGAATCTTTATATTTGATAAAGTC
ATTGAGTTTTGATAAAATCTGATACATTTTTTAAAATTTACATTCTAACA
TCGGGCCTCTTACAAAAGTAACCTCCATATTTTTATCTTTATTCATCTGC
AAGCC

Coding sequence (CDS) from alignment at sc0000147:220729..226333-

>TCONS_00012730 ID=TCONS_00012730|Name=TCONS_00012730|organism=Clytia hemisphaerica|type=CDS|length=5232bp|location=Sequence derived from alignment at sc0000147:220729..226333- (Clytia hemisphaerica)
TTCTTGAAGAAATGGAGTCACGTTTTGATCGTAGAAAGAAATGAAACGTT
GAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAGGCTGTTGG
AAGAGTCAAACTTGTCGTTAAATATACTCCCCAAGACATGGTGGTTTGAA
ACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGGCAACAGTAGCGGCAT
TTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTTGAATTACCAAAA
ACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACTGGAACAAAATTC
ACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTGCTGATAGGTTTA
CGAACAAGTTTACGAGACGGTAGATTTCAATACAAATGATGAAGTACGTG
CGAACGCAACAGCAAAGGAAATGATCTACCAGCTCAAAAAATGCAAAATC
TCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTAAAAGATACATTC
AACGAGCCATCGAATTACTGGATGAACTAAGCCAAAATGCTTTCGTTAGA
CCACGAAACATTTACAACTTCAAAACGTTCTTTAGTTTTAGCAGAAATAA
TAAAAAGTAAAATAAAGATGACAGACTCTGCAAGATCACTTAACCTTTCG
TCCGTTCTTGAAGAAATGGAGTCACGTTTTGATCGTAGAAAGAAATGAAA
CGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAGGCTG
TTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCAAGACATGGTGGTT
TGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGGCAACAGTAGCG
GCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTTGAATTACC
AAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACTGGAACAAA
ATTCACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTGCTGATAGG
TTTACGAACAAGTTTACGAGACGGTAGATTTCAATACAAATGATGAAGTA
CGTGCGAACGCAACAGCAAAGGAAATGATCTACCAGCTCAAAAAATGCAA
AATCTCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTAAAAGATAC
ATTCAACGAGCCATCGAATTACTGGATGAACTAAGCCAAAATGCTTTCGT
TAGACCACGAAACATTTACAACTTCAAAACGTTCTTTAGTTTTAGCAGAA
ATAATAAAAAGTAAAATAAAGATGACAGACTCTGCAAGATCACTTAACCT
TTCGTCCGTTCTTGAAGAAATGGAGTCACGTTTTGATCGTAGAAAGAAAT
GAAACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAAAGAG
GCTGTTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCAAGACATGGT
GGTTTGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGGCAACAGT
AGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTTGAAT
TACCAAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACTGGAA
CAAAATTCACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTGCTGA
TAGGTTTACGAACAAGTTTACGAGACGGTAGATTTCAATACAAATGATGA
AGTACGTGCGAACGCAACAGCAAAGGAAATGATCTACCAGCTCAAAAAAT
GCAAAATCTCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTAAAAG
ATACATTCAACGAGCCATCGAATTACTGGATGAACTAAGCCAAAATGCTT
TCGTTAGACCACGAAACATTTACAACTTCAAAACGTTCTTTAGTTTTAGC
AGAAATAATAAAAAGTAAAATAAAGATGACAGACTCTGCAAGATCACTTA
ACCTTTCGTCCGTTCTTGAAGAAATGGAGTCACGTTTTGATCGTAGAAAG
AAATGAAACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTATTGAA
AGAGGCTGTTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCAAGACA
TGGTGGTTTGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTGTGGCAA
CAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAATTGTT
GAATTACCAAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAGGACT
GGAACAAAATTCACCAATTTACATTTCCAGAATTATCCCTGACGGTGTTG
CTGATAGGTTTACGAACAAGTTTACGAGACGGTAGATTTCAATACAAATG
ATGAAGTACGTGCGAACGCAACAGCAAAGGAAATGATCTACCAGCTCAAA
AAATGCAAAATCTCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAGTGTA
AAAGATACATTCAACGAGCCATCGAATTACTGGATGAACTAAGCCAAAAT
GCTTTCGTTAGACCACGAAACATTTACAACTTCAAAACGTTCTTTAGTTT
TAGCAGAAATAATAAAAAGTAAAATAAAGATGACAGACTCTGCAAGATCA
CTTAACCTTTCGTCCGTTCTTGAAGAAATGGAGTCACGTTTTGATCGTAG
AAAGAAATGAAACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGATTTAT
TGAAAGAGGCTGTTGGAAGAGTCAAACTTGTCGTTAAATATACTCCCCAA
GACATGGTGGTTTGAAACGTGGCGATCAACTGCTTGCAGTAAATGGTGTG
GCAACAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAAGAAT
TGTTGAATTACCAAAAACTGATGAAGGATTAGGATTTAACGTTATGGGAG
GACTGGAACAAAATTCACCAATTTACATTTCCAGAATTATCCCTGACGGT
GTTGCTGATAGGTTTACGAACAAGTTTACGAGACGGTAGATTTCAATACA
AATGATGAAGTACGTGCGAACGCAACAGCAAAGGAAATGATCTACCAGCT
CAAAAAATGCAAAATCTCAAATCGGTTTTGGAAAGTCACTTTTGCCAAAG
TGTAAAAGATACATTCAACGAGCCATCGAATTACTGGATGAACTAAGCCA
AAATGCTTTCGTTAGACCACGAAACATTTACAACTTCAAAACGTTCTTTA
GTTTTAGCAGAAATAATAAAAAGTAAAATAAAGATGACAGACTCTGCAAG
ATCACTTAACCTTTCGTCCGTTCTTGAAGAAATGGAGTCACGTTTTGATC
GTAGAAAGAAATGAAACGTTGAGGGGGAGCACCACGAGAAAGCTGTAGAT
TTATTGAAAGAGGCTGTTGGAAGAGTCAAACTTGTCGTTAAATATACTCC
CCAAGACATGGTGGTTTGAAACGTGGCGATCAACTGCTTGCAGTAAATGG
TGTGGCAACAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGCACACCCAA
GAATTGTTGAATTACCAAAAACTGATGAAGGATTAGGATTTAACGTTATG
GGAGGACTGGAACAAAATTCACCAATTTACATTTCCAGAATTATCCCTGA
CGGTGTTGCTGATAGGTTTACGAACAAGTTTACGAGACGGTAGATTTCAA
TACAAATGATGAAGTACGTGCGAACGCAACAGCAAAGGAAATGATCTACC
AGCTCAAAAAATGCAAAATCTCAAATCGGTTTTGGAAAGTCACTTTTGCC
AAAGTGTAAAAGATACATTCAACGAGCCATCGAATTACTGGATGAACTAA
GCCAAAATGCTTTCGTTAGACCACGAAACATTTACAACTTCAAAACGTTC
TTTAGTTTTAGCAGAAATAATAAAAAGTAAAATAAAGATGACAGACTCTG
CAAGATCACTTAACCTTTCGTCCGTTCTTGAAGAAATGGAGTCACGTTTT
GATCGTAGAAAGAAATGAAACGTTGAGGGGGAGCACCACGAGAAAGCTGT
AGATTTATTGAAAGAGGCTGTTGGAAGAGTCAAACTTGTCGTTAAATATA
CTCCCCAAGACATGGTGGTTTGAAACGTGGCGATCAACTGCTTGCAGTAA
ATGGTGTGGCAACAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGCACAC
CCAAGAATTGTTGAATTACCAAAAACTGATGAAGGATTAGGATTTAACGT
TATGGGAGGACTGGAACAAAATTCACCAATTTACATTTCCAGAATTATCC
CTGACGGTGTTGCTGATAGGTTTACGAACAAGTTTACGAGACGGTAGATT
TCAATACAAATGATGAAGTACGTGCGAACGCAACAGCAAAGGAAATGATC
TACCAGCTCAAAAAATGCAAAATCTCAAATCGGTTTTGGAAAGTCACTTT
TGCCAAAGTGTAAAAGATACATTCAACGAGCCATCGAATTACTGGATGAA
CTAAGCCAAAATGCTTTCGTTAGACCACGAAACATTTACAACTTCAAAAC
GTTCTTTAGTTTTAGCAGAAATAATAAAAAGTAAAATAAAGATGACAGAC
TCTGCAAGATCACTTAACCTTTCGTCCGTTCTTGAAGAAATGGAGTCACG
TTTTGATCGTAGAAAGAAATGAAACGTTGAGGGGGAGCACCACGAGAAAG
CTGTAGATTTATTGAAAGAGGCTGTTGGAAGAGTCAAACTTGTCGTTAAA
TATACTCCCCAAGACATGGTGGTTTGAAACGTGGCGATCAACTGCTTGCA
GTAAATGGTGTGGCAACAGTAGCGGCATTTGCAGCGAGTGAAGGGCACGC
ACACCCAAGAATTGTTGAATTACCAAAAACTGATGAAGGATTAGGATTTA
ACGTTATGGGAGGACTGGAACAAAATTCACCAATTTACATTTCCAGAATT
ATCCCTGACGGTGTTGCTGATAGGTTTACGAACAAGTTTACGAGACGGTA
GATTTCAATACAAATGATGAAGTACGTGCGAACGCAACAGCAAAGGAAAT
GATCTACCAGCTCAAAAAATGCAAAATCTCAAATCGGTTTTGGAAAGTCA
CTTTTGCCAAAGTGTAAAAGATACATTCAACGAGCCATCGAATTACTGGA
TGAACTAAGCCAAAATGCTTTCGTTAGACCACGAAACATTTACAACTTCA
AAACGTTCTTTAGTTTTAGCAGAAATAATAAAAAGTAAAATAAAGATGAC
AGACTCTGCAAGATCACTTAACCTTTCGTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007140XLOC_007140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012730-exon-sc0000147-1575043694:226147..226333TCONS_00012730-exon-sc0000147-1575043694:226147..226333Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:225865..225906TCONS_00012730-exon-sc0000147-1575043694:225865..225906Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:225354..225430TCONS_00012730-exon-sc0000147-1575043694:225354..225430Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:225061..225132TCONS_00012730-exon-sc0000147-1575043694:225061..225132Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:224531..224691TCONS_00012730-exon-sc0000147-1575043694:224531..224691Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:224014..224062TCONS_00012730-exon-sc0000147-1575043694:224014..224062Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:223408..223498TCONS_00012730-exon-sc0000147-1575043694:223408..223498Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:222500..222565TCONS_00012730-exon-sc0000147-1575043694:222500..222565Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1575043694:220729..221659TCONS_00012730-exon-sc0000147-1575043694:220729..221659Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:226147..226333TCONS_00012730-exon-sc0000147-1510915933:226147..226333Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:225865..225906TCONS_00012730-exon-sc0000147-1510915933:225865..225906Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:225354..225430TCONS_00012730-exon-sc0000147-1510915933:225354..225430Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:225061..225132TCONS_00012730-exon-sc0000147-1510915933:225061..225132Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:224531..224691TCONS_00012730-exon-sc0000147-1510915933:224531..224691Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:224014..224062TCONS_00012730-exon-sc0000147-1510915933:224014..224062Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:223408..223498TCONS_00012730-exon-sc0000147-1510915933:223408..223498Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:222500..222565TCONS_00012730-exon-sc0000147-1510915933:222500..222565Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1510915933:220729..221659TCONS_00012730-exon-sc0000147-1510915933:220729..221659Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:226147..226333TCONS_00012730-exon-sc0000147-1491911889:226147..226333Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:225865..225906TCONS_00012730-exon-sc0000147-1491911889:225865..225906Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:225354..225430TCONS_00012730-exon-sc0000147-1491911889:225354..225430Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:225061..225132TCONS_00012730-exon-sc0000147-1491911889:225061..225132Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:224531..224691TCONS_00012730-exon-sc0000147-1491911889:224531..224691Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:224014..224062TCONS_00012730-exon-sc0000147-1491911889:224014..224062Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:223408..223498TCONS_00012730-exon-sc0000147-1491911889:223408..223498Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:222500..222565TCONS_00012730-exon-sc0000147-1491911889:222500..222565Clytia hemisphaericaexon
TCONS_00012730-exon-sc0000147-1491911889:220729..221659TCONS_00012730-exon-sc0000147-1491911889:220729..221659Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012730-proteinTCONS_00012730-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:220729..226333 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38234	1.39344	0.359416	0.618953	43.192	30.5535	27.3206	29.0152	28.9281	27.2742	19.2986	19.1234	12.2826	10.37	12.5496	12.0012	26.5734	23.1694	8.4446	12.5411	20.4143	21.3736	17.0471	17.4962	15.9457	18.3349	32.81	23.6532	23.5928	18.2024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR004172L27_dom
IPR014775L27_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00012730 vs. Swiss-Prot (Human)
Match: LIN7C (Protein lin-7 homolog C OS=Homo sapiens GN=LIN7C PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.093e-80
Identity = 134/187 (71.66%), Postives = 162/187 (86.63%), Query Frame = 1 
Query:  151 MTDSARSLNLSSDIQRAIELLDELSQRNDLPAQKMQNLKSVLESHFCQSVKDVYEQVYETVDFNTNDEVRXXXXXXXXXXXXXXSEGHAHPRIVELPKTDEGLGFNVMGGLEQNSPIYISRIIPDGVADRHGGLKRGDQLLAVNGVNVEGEHHEKAVDLLKEAVGRVKLVVKYTPQVLEEMESRFDR 711
            M      + L  DI RAIELL++L +  ++P QK+Q L+ VL+S FC +V++VYE VYETVD +++ EVRANATAKATVAAFAASEGH+HPR+VELPKT+EGLGFN+MGG EQNSPIYISRIIP G+ADRHGGLKRGDQLL+VNGV+VEGEHHEKAV+LLK A G+VKLVV+YTP+VLEEMESRF++
Sbjct:    1 MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEK 187
The following BLAST results are available for this feature:
BLAST of TCONS_00012730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN7C1.093e-8071.66Protein lin-7 homolog C OS=Homo sapiens GN=LIN7C P... [more]
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