TCONS_00012730-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012730-protein
Unique NameTCONS_00012730-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012730-protein ID=TCONS_00012730-protein|Name=TCONS_00012730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MLSLDHETFTTSKRSLVLAEIIKSKIKMTDSARSLNLSSDIQRAIELLDE
LSQRNDLPAQKMQNLKSVLESHFCQSVKDVYEQVYETVDFNTNDEVRANA
TAKATVAAFAASEGHAHPRIVELPKTDEGLGFNVMGGLEQNSPIYISRII
PDGVADRHGGLKRGDQLLAVNGVNVEGEHHEKAVDLLKEAVGRVKLVVKY
TPQVLEEMESRFDRRKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007140XLOC_007140Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012730TCONS_00012730Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR004172L27_dom
IPR014775L27_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 128..202
e-value: 1.2E-22
score: 91.2
IPR001478PDZ domainPFAMPF00595PDZcoord: 122..198
e-value: 2.0E-18
score: 66.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 120..202
score: 22.174
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 115..208
IPR004172L27 domainSMARTSM00569L27_neu3coord: 40..95
e-value: 2.9E-7
score: 40.1
IPR004172L27 domainGENE3D1.10.287.650coord: 35..90
e-value: 1.0E-23
score: 82.6
IPR004172L27 domainPROSITEPS51022L27coord: 37..92
score: 12.781
IPR004172L27 domainSUPERFAMILY101288L27 domaincoord: 35..90
NoneNo IPR availableGENE3D2.30.42.10coord: 108..213
e-value: 2.0E-31
score: 107.5
NoneNo IPR availablePIRSFPIRSF038039UCP038039_Lin-7_homolcoord: 128..217
e-value: 7.2E-51
score: 170.8
coord: 28..130
e-value: 8.0E-43
score: 144.4
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 118..199
e-value: 1.19515E-27
score: 100.719
IPR014775L27 domain, C-terminalPFAMPF02828L27coord: 41..89
e-value: 3.8E-13
score: 48.9

Blast
[Close]
BLAST of TCONS_00012730-protein vs. Swiss-Prot (Human)
Match: LIN7B (Protein lin-7 homolog B OS=Homo sapiens GN=LIN7B PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.701e-97
Identity = 127/180 (70.56%), Postives = 156/180 (86.67%), Query Frame = 0 
Query:   35 LNLSSDIQRAIELLDELSQRNDLPAQKMQNLKSVLESHFCQSVKDVYEQVYETVDFNTNDEVRANATAKATVAAFAASEGHAHPRIVELPKTDEGLGFNVMGGLEQNSPIYISRIIPDGVADRHGGLKRGDQLLAVNGVNVEGEHHEKAVDLLKEAVGRVKLVVKYTPQVLEEMESRFDR 214
            L L  D+ RA+ELL+ L +  +LP QK+Q L+ VL+S FC ++++VYEQ+Y+T+D   + E+RA+ATAKATVAAF ASEGHAHPR+VELPKTDEGLGFN+MGG EQNSPIYISR+IP GVADRHGGLKRGDQLL+VNGV+VEGE HEKAV+LLK A G VKLVV+YTP+VLEEME+RF++
Sbjct:    8 LGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEK 187
The following BLAST results are available for this feature:
BLAST of TCONS_00012730-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN7B2.701e-9770.56Protein lin-7 homolog B OS=Homo sapiens GN=LIN7B P... [more]
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