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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012682 ID=TCONS_00012682|Name=TCONS_00012682|organism=Clytia hemisphaerica|type=transcript|length=4083bp
ATCTTTTGGAAGACGGCGTTTGTccacggaagaatatttcaatgaattag
aaaaaagcccgcgcggtcagcgattctataaaaagcgaccgcgcaggctg
tctggggcgtccggggtagtctctcaaaaacaaataatacggaccccggg
cacgcatcaaaaaaaccccggactgtcccggggcataggcagggccgtga
aagtagacctagctctctcgatgcatttacaccactaTCGAGTAGTgtcg
acattagggtaccaattttcaaaaaactccgatcaaagattttttgcttg
gctgggattgagaagctttgtccagggttatataaaggtcagtggtctgG
CTCTGGGGTCTTGTAAACAGCCCAACCAACAGGACAGTCCTGGTGTGGTC
TATGGGGCAAAGCCCCAAGAAAATTATGCTTTTTTGCGGAATAAGTGCTA
TAATATCAAATATTTGAAGACATTTTTCACTACAGTAATTAACCTTTTTC
CTCCATagctaattttatttttcataaatattGAGTTCCAAAACTCAATT
AAAGATTCAGTTTCTACTACCATTATCCGGTAGCAGAAAGCCCCTGGAAA
TTTGCCTGAATTGGTGATTGGATACCGAGCGCCGAGAGATTGggtaacat
gcatagccctcaaatgaatgacctgtcagtatagacttaaactcgtatat
caagattacaggattcgagtacgggccgattttactttcgttttaaGTGG
Ttccattttcgatttcaagccaacatcttagcaacagggtgctcgcccat
agttacaggggtttgtgcaaaaaactaaacatagaaaattttccaaatcc
ctcATTTCGATTAggggtcttcgacaaaaaactttcgaattttttatcgg
cattgggccgataaggggGTAGGGGGGTCTAACTACATAGGGtaccgata
aaaaaacaagtattgggatgaaaatattttcagttaatttctttctgatt
tcgtccacaaactccactgaaagcatacaatttcacttgctttcaccttc
GCGCACAAATTCGCTACTTTAAAAGTCAGCGTGCTGCTGTTTCTTTCGAA
ATGTTGCAACTTCATCGCGtctttttaactttgttttgattaacaatatc
aatgcggatatgaacaaactcaatgttggtgcaaATACATAGACAAAAAT
TCAACGCGATTGCAGGCATGATTGGAAAAAATGTGTTTTCCAAGATGTAA
AAGTTGGTTTCGAAAAAGTTTGgccgataagagcaaggggggagggggtc
tggaGCTTATTGGctcaatgccgataaaaaatttgaaaattttttgtcga
agaccccTTAAAGCAGTTAAGAAATGACTTTTTTGCACCTAattcttcaa
aaagaaaatatttaagattttaagttcttcttttattcaatgatctTTTA
CGGcgctttgttgacaatctaactatCGCCTCAAATTCCCGGTTTCTTCT
gtgtaaattgaagatgagaagaAACCTAAGCCAcagatcacggattgaaa
caaatatataaacagatatgaagggtgggattttacagacacccatcttt
ttcttgggaagttaaTCTTCAAATTACTTTTCAAGGTTGACTTGgctcaa
atcttttcatctatggctcaaattttaggcaatttctgatagtttttgaa
aaagttaatttcattaaaaagtggcgggttattttttgatgaattccttt
agaagttttgcggcgcacttgtttgcttgcgagtcaagtgAACAATAGAG
CGCTTTCACAGCATTTTTCTTTGATGCGCATCTTGGCGGGACGCtaagtg
tgactaactgtttgtCAGTCAAGGATTATACCCTAAAGAGATATACTCAT
TTAAGAGAAGGTCTCTTAagatttctttctcttaacaaggagacttttct
ttcttcattAATTTTTGGCCTTCCCATCACTTTGCACAAGTTTTGAACTT
CATAGATTGACTCAGCAcgtttttttctcccttctagcaaaatttggttg
agttcTGCTTATGTTTCGTGGACCTAGCctgctgacttttagttttagtg
acttgttctcacttgtttgatttttgtaataaaaaaaaagtcattattgt
gaactttgaacattcTTTAAATGGAGGTATTTCCACTAACTGCGCAGACA
AATAGAGATGAAGCGGCAATCATGGCCTAGGGCGCTACTTAGTTCCGCCT
TATTTTGATAAGAGGAATAGCTTTTTCTAAACCTGGAATATTGAAGTTCC
GGCTGTACTGAACGAAAGTCCAAGCCCCGTTTCCCGATTTTCCCACTGCT
TCCCATTGCTTCCCATTGTTACTTAACTCTCGCATATAGCTCAAAAAAAG
TCTATTAACGAGATTGTTACagaaagtgctgggtcaaaaatgtAAATTAA
GCAAAtttcaagatatcggccaaaaagtGATTTTGACATTacgaaattcg
tcgaaaaaacatgtcataagtaagattcaaaGGATGTCATTATTAAAAAA
AGGCAATAACTTCAAGTCTAATAaagcaatcaacaccaaattttgacgtc
aaaaaatgatgacgttgttaaaaatttttcattctcgttttcatgttatt
agatgctgttttagagctttagaccGTGTCACTGGTCGAAATATTGAAAC
TACCATGAGTTGGctgatttatcaaaaatacgCACATGATTAGCAGAGCA
AGCGTTATCGTATGTATATCGCAGATATCTTGCTCCGGAATAACTGAAGT
GCACCAGAACATTCCGGAGTTCTGGTGTagaccaatcgccgaaagtgcTC
CGGAACACTGAAAGTGATCCAAAATCATCCGGTGTTCGGGAGCACGTAAA
AAAACGGTACTTTTTGCTCCGTACGTTTCCGGAGCGCCAGGAGGGTCCTA
GCAGAAAAGTTCTTATTATTGCTTGAACACTAATTTTTGAATCATACTCT
TTGCCTCAATGAAATATGTAGTACTAATATTTCAAATGATTAATGTTTTA
ATTGGAGTAAATGAAAATGGAtccaacaaaaaataaaacatttcagCTGC
AAGGACAATCTGGTGGTTTTAGTGATCGTTTAAATTCAATCTTTGGGAGC
TTGGATGAAAAACAATCAATAAATGAAGACTCTAACAAGATAATAAACAG
CAAAAATAATGATGAGAGAATATCAACAGAAAACAAGGAGAAAAGAGCTC
ATAGAGAATATCACCAAGCCGATAGTAGAAATGAAAAACAAGAGTTTAGT
AAACCTGGTGAAAGATCTCATCATAGAGAAAGTCGAGAACTTTATAAGCC
TCCCAAAAGGTGTCCAAGAGATAATAACGAATTCCAAAAACCTTATGACA
GACCACAAAGAGGACGTAGAAATGCAAGGGTACCTGATCATGTTCTTCAT
CCTGAAAAATACCAGAAATATAGtTTGAAGCAAGATGGAACACgtgattc
aaaattaaaagGTGATGCCCTGAACAAAAAGATTGCATTAGATTTTATAG
ACAGTCTCAGAGGAGAAAAAGATTTGGAGAATGAGGACTTCAACAGAGAC
AAGGGTgtcgatttcaagccaaaatttagacAATCAAGTAGCAAAACTAA
TAATGAtgataataaaataaattcaaaaagaCCTACTTTCCAATCATCAC
ATGGAGCCAAAGCCAGAGTTATGGAAACGTTTGAGTTTGGAAAATcctca
acattttcaaaaagtaaacaaaaagaaatagaaatttcTGAGAAAGAGCC
TTCTTCTAGCAAACCAACTAAATCAGAAGACAAGGTGTCTACAGGTGGAG
GAATAACACTTAACTATTATGAGGATGAAGAAGAGGATGAGACTTGAACa
taaaataatttattataGAGTTTTATTACAAATTTCCACGAGAATCCTAT
TACACTACTTGTCATTCTACAAAGAATTTTTAATACAATTTCTGCTTGGG
ATTATTACAAATCTGTCTATGTTCAGGGAGTTTGGTGTTTCCCACATTCA
ATTATTCAATGAGCTAACCTAATATAATATGAC Run BLAST on NCBI transcript from alignment at sc0000147:297507..301874+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012682 ID=TCONS_00012682|Name=TCONS_00012682|organism=Clytia hemisphaerica|type=transcript|length=4368bp|location=Sequence derived from alignment at sc0000147:297507..301874+ (Clytia hemisphaerica)
ATCTTTTGGAAGACGGCGTTTGTccacggaagaatatttcaatgaattag
aaaaaagcccgcgcggtcagcgattctataaaaagcgaccgcgcaggctg
tctggggcgtccggggtagtctctcaaaaacaaataatacggaccccggg
cacgcatcaaaaaaaccccggactgtcccggggcataggcagggccgtga
aagtagacctagctctctcgatgcatttacaccactaTCGAGTAGTgtcg
acattagggtaccaattttcaaaaaactccgatcaaagattttttgcttg
gctgggattgagaagctttgtccagggttatataaaggtcagtggtctgG
CTCTGGGGTCTTGTAAACAGCCCAACCAACAGGACAGTCCTGGTGTGGTC
TATGGGGCAAAGCCCCAAGAAAATTATGCTTTTTTGCGGAATAAGTGCTA
TAATATCAAATATTTGAAGACATTTTTCACTACAGTAATTAACCTTTTTC
CTCCATagctaattttatttttcataaatattGAGTTCCAAAACTCAATT
AAAGATTCAGTTTCTACTACCATTATCCGGTAGCAGAAAGCCCCTGGAAA
TTTGCCTGAATTGGTGATTGGATACCGAGCGCCGAGAGATTGggtaacat
gcatagccctcaaatgaatgacctgtcagtatagacttaaactcgtatat
caagattacaggattcgagtacgggccgattttactttcgttttaaGTGG
Ttccattttcgatttcaagccaacatcttagcaacagggtgctcgcccat
agttacaggggtttgtgcaaaaaactaaacatagaaaattttccaaatcc
ctcATTTCGATTAggggtcttcgacaaaaaactttcgaattttttatcgg
cattgggccgataaggggGTAGGGGGGTCTAACTACATAGGGtaccgata
aaaaaacaagtattgggatgaaaatattttcagttaatttctttctgatt
tcgtccacaaactccactgaaagcatacaatttcacttgctttcaccttc
GCGCACAAATTCGCTACTTTAAAAGTCAGCGTGCTGCTGTTTCTTTCGAA
ATGTTGCAACTTCATCGCGtctttttaactttgttttgattaacaatatc
aatgcggatatgaacaaactcaatgttggtgcaaATACATAGACAAAAAT
TCAACGCGATTGCAGGCATGATTGGAAAAAATGTGTTTTCCAAGATGTAA
AAGTTGGTTTCGAAAAAGTTTGgccgataagagcaaggggggagggggtc
tggaGCTTATTGGctcaatgccgataaaaaatttgaaaattttttgtcga
agaccccTTAAAGCAGTTAAGAAATGACTTTTTTGCACCTAattcttcaa
aaagaaaatatttaagattttaagttcttcttttattcaatgatctTTTA
CGGcgctttgttgacaatctaactatCGCCTCAAATTCCCGGTTTCTTCT
gtgtaaattgaagatgagaagaAACCTAAGCCAcagatcacggattgaaa
caaatatataaacagatatgaagggtgggattttacagacacccatcttt
ttcttgggaagttaaTCTTCAAATTACTTTTCAAGGTTGACTTGgctcaa
atcttttcatctatggctcaaattttaggcaatttctgatagtttttgaa
aaagttaatttcattaaaaagtggcgggttattttttgatgaattccttt
agaagttttgcggcgcacttgtttgcttgcgagtcaagtgAACAATAGAG
CGCTTTCACAGCATTTTTCTTTGATGCGCATCTTGGCGGGACGCtaagtg
tgactaactgtttgtCAGTCAAGGATTATACCCTAAAGAGATATACTCAT
TTAAGAGAAGGTCTCTTAagatttctttctcttaacaaggagacttttct
ttcttcattAATTTTTGGCCTTCCCATCACTTTGCACAAGTTTTGAACTT
CATAGATTGACTCAGCAcgtttttttctcccttctagcaaaatttggttg
agttcTGCTTATGTTTCGTGGACCTAGCctgctgacttttagttttagtg
acttgttctcacttgtttgatttttgtaataaaaaaaaagtcattattgt
gaactttgaacattcTTTAAATGGAGGTATTTCCACTAACTGCGCAGACA
AATAGAGATGAAGCGGCAATCATGGCCTAGGGCGCTACTTAGTTCCGCCT
TATTTTGATAAGAGGAATAGCTTTTTCTAAACCTGGAATATTGAAGTTCC
GGCTGTACTGAACGAAAGTCCAAGCCCCGTTTCCCGATTTTCCCACTGCT
TCCCATTGCTTCCCATTGTTACTTAACTCTCGCATATAGCTCAAAAAAAG
TCTATTAACGAGATTGTTACagaaagtgctgggtcaaaaatgtAAATTAA
GCAAAtttcaagatatcggccaaaaagtGATTTTGACATTacgaaattcg
tcgaaaaaacatgtcataagtaagattcaaaGGATGTCATTATTAAAAAA
AGGCAATAACTTCAAGTCTAATAaagcaatcaacaccaaattttgacgtc
aaaaaatgatgacgttgttaaaaatttttcattctcgttttcatgttatt
agatgctgttttagagctttagaccGTGTCACTGGTCGAAATATTGAAAC
TACCATGAGTTGGctgatttatcaaaaatacgCACATGATTAGCAGAGCA
AGCGTTATCGTATGTATATCGCAGATATCTTGCTCCGGAATAACTGAAGT
GCACCAGAACATTCCGGAGTTCTGGTGTagaccaatcgccgaaagtgcTC
CGGAACACTGAAAGTGATCCAAAATCATCCGGTGTTCGGGAGCACGTAAA
AAAACGGTACTTTTTGCTCCGTACGTTTCCGGAGCGCCAGGAGGGTCCTA
GCAGAAAAGTTCTTATTATTGCTTGAACACTAATTTTTGAATCATACTCT
TTGCCTCAATGAAATATGTAGTACTAATATTTCAAATGATTAATGTTTTA
ATTGGAGTAAATGAAAATGGAtccaacaaaaaataaaacatttcagCTGC
AAGGACAATCTGGTGGTTTTAGTGATCGTTTAAATTCAATCTTTGGGAGC
TTGGATGAAAAACAATCAATAAATGAAGACTCTAACAAGATAATAAACAG
CAAAAATAATGATGAGAGAATATCAACAGAAAACAAGGAGAAAAGAGCTC
ATAGAGAATATCACCAAGCCGATAGTAGAAATGAAAAACAAGAGTTTAGT
AAACCTGGTGAAAGATCTCATCATAGAGAAAGTCGAGAACTTTATAAGCC
TCCCAAAAGGTGTCCAAGAGATAATAACGAATTCCAAAAACCTTATGACA
GACCACAAAGAGGACGTAGAAATGCAAGGGTACCTGATCATGTTCTTCAT
CCTGAAAAATACCAGAAATATAGGTACGTTTATTTGAACCTTTTGTTACA
TCTTTCTTGGCTCATGTTGATTAAAATGACAAATGGTGCCaaagatatat
atttttacaaaagCAAACTGACTGCTTTCTctgatattctttttttttct
tcatataaTTAATTATAGTTTAAGACTATGTAAAACTAggtatcttttga
aaaaaaatcttatgatTTATAACAAAGTAACCGAAAAcaagaaatttgat
tttgttcATCTTGAACCAGTTTGAACTAAAGttaaagacattttttgttt
atttctagtTTGAAGCAAGATGGAACACgtgattcaaaattaaaagGTGA
TGCCCTGAACAAAAAGATTGCATTAGATTTTATAGACAGTCTCAGAGGAG
AAAAAGATTTGGAGAATGAGGACTTCAACAGAGACAAGGGTgtcgatttc
aagccaaaatttagacAATCAAGTAGCAAAACTAATAATGAtgataataa
aataaattcaaaaagaCCTACTTTCCAATCATCACATGGAGCCAAAGCCA
GAGTTATGGAAACGTTTGAGTTTGGAAAATcctcaacattttcaaaaagt
aaacaaaaagaaatagaaatttcTGAGAAAGAGCCTTCTTCTAGCAAACC
AACTAAATCAGAAGACAAGGTGTCTACAGGTGGAGGAATAACACTTAACT
ATTATGAGGATGAAGAAGAGGATGAGACTTGAACataaaataatttatta
taGAGTTTTATTACAAATTTCCACGAGAATCCTATTACACTACTTGTCAT
TCTACAAAGAATTTTTAATACAATTTCTGCTTGGGATTATTACAAATCTG
TCTATGTTCAGGGAGTTTGGTGTTTCCCACATTCAATTATTCAATGAGCT
AACCTAATATAATATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012682-exon-sc0000147-1491911889:297507..300979 | TCONS_00012682-exon-sc0000147-1491911889:297507..300979 | Clytia hemisphaerica | exon |
| TCONS_00012682-exon-sc0000147-1510915933:297507..300979 | TCONS_00012682-exon-sc0000147-1510915933:297507..300979 | Clytia hemisphaerica | exon |
| TCONS_00012682-exon-sc0000147-1575043694:297507..300979 | TCONS_00012682-exon-sc0000147-1575043694:297507..300979 | Clytia hemisphaerica | exon |
| TCONS_00012682-exon-sc0000147-1491911889:301265..301874 | TCONS_00012682-exon-sc0000147-1491911889:301265..301874 | Clytia hemisphaerica | exon |
| TCONS_00012682-exon-sc0000147-1510915933:301265..301874 | TCONS_00012682-exon-sc0000147-1510915933:301265..301874 | Clytia hemisphaerica | exon |
| TCONS_00012682-exon-sc0000147-1575043694:301265..301874 | TCONS_00012682-exon-sc0000147-1575043694:301265..301874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:297507..301874 + |
Blast
The following BLAST results are available for this feature:
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