XLOC_007124 (gene) - C. hemisphaerica

Overview
NameXLOC_007124
Unique NameXLOC_007124
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000147:292357..301874+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007124 ID=XLOC_007124|Name=XLOC_007124|organism=Clytia hemisphaerica|type=gene|length=9518bp|location=Sequence derived from alignment at sc0000147:292357..301874+ (Clytia hemisphaerica)
CCATTCGATAGGGATTTGAGAAAGTAAGTATGTTTCAGAATCTTTCAAAG
CAGGTTGGTGCACAATTTTAagtcaatacaccgtttaggagtctcgccat
ttcacggtactccattgaccattgcagaggcccggtaaaaatggtaggta
aaaatgcgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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agctaagatcacgggctttcatttagtaaaaaccggaacgctttagcata
catagaaaagaagttccaagggttcaaagttcacggaaaaatgaaacatt
tcatttgacgtcaacgaaagttgcatgacttctggagtcgctacctTGGG
CCCGCAGGGTTgatgctagtaacggctcgaatttcagtcaggtttaaaaa
aggggtacttttacccatattataataacattacccccgtattttgccag
tttggtataaaatgttatgaattgcaTGGTtctgctgtgcggcgatggct
caagggatagagcgctggcttccggaACCGAAGGTCTTTcttacgaccct
cgacatggcccgagaattctcgggcctcttcgggccatgttcgggccgag
agaccctatcaattcttttggcccgaacatgacccgagtccttcgggcca
tgttcggacCATGTCAGGAGATTCCATATTTAAATtaattcagcatgtcc
agtcaaacaaaatagtacaaaataagatttgtctgttttgtttatatcgc
tcaaaaaaactttacgagcttcccgtggacacaatgaagtataagcccga
agggctagaagtcgaTCTCTTTGGtaagatttgaagccaacaaatcctac
caaagttgcgcggccttgagcagctcgcctggtttttacacaaatgacag
attgaaactaaaatttaccgctaaatttcgaaaaaaatatcaatcataaa
ccaaggaattgctagattcaatctgtcgtcaaaaatgtggcgcatttttt
aaggcttcactttttcttgcctgagaaaggttagagattgaactctagcc
ctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacta
gcaaatatttccaccctaagtatatttataactatgttttcataccaaat
aagacatttaatatttatatgaatttacaacattcatatatttaaaatat
aaataagagaaaccaagtttttctcaaagaaaatgttaaaaaaattcagt
cctggaATTAcgcgcctgtttaaatcatgttttcaaaaattggcccgagt
gtggcccgaacacggccagaattctcgggccagctcgggccatactcggg
ctttacgcgaattccaataaaagtgttggcccgagaattctcgggccatg
ccGAGGGTCgttctttctttggtggtggttcgaatcccactcggtgcgaa
aattagactggtcgaaattgatgaacaaatgattgacaggtatgaaaact
cagtcagaaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaactaagtctcagaaactc
agaagctcagacagtcagaaaagagaaggACGGGATCAGAGATAAGGATC
ACATTTCGGAGGtttgtcttttatgttttccactccagaagtcatgcaac
tttcgttgacatcaaaccaaatgtttcatttttctgtgaactttgaactc
ttggaactttttttttatgtatgctaaagcgttccggtttttactaaatg
aaagcccgtgatcttagctttccagcagTATATAACACTTGtgggacacg
ggctagacggcaaattggtaaaatgccaaacattttgcaatattttgaaa
attgtttgccgacgggagaaaaacaATTTACAACTATCGAAGatcaaatg
tgtctggaaacggaggaaaatgtatttggaggctgaaactgtgtatgttt
atcagaaaaagggtgaggaattcaaaagtcacaatcgctaattctagttc
tttcattttcatgtaggttgcataccttttaatgttcaaaaccaaaaaac
tgaaACTGTTCCACTAAACTGCAGATGgtttgggtttgtttacctaAACA
AAGAAGCTGTTACATTGCTAATTCGATTTCTAGGATCTTGCCTGAAGTCA
CAGCaacgaatttcaaaatggtagcccagCAGAAGAAAACATTAAAGCTT
AGGGCTTATGCATGCGTGCGCTTAGTGAACCAGCGTAAACAAAATGTATT
GCTTGGTTAGAATAATGgtttagcaaaacaaaaaatcaaatggtaCAGTT
TGTTTGCTAAACCCTCGGTTTAGCGAACgaagaaaacacagaaaaaaaac
TGTTGGCTTTGATCGTCTGTTTAGgtaaacttttaaatgaatcaaTGCGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ttctagttctttcattttcatgtagtttttttaacttttttgcttcttta
gcatgggaatgtcccaaaaaaaagtttttatttctgccgaaatggatttt
tttttcatttggggtttctcctttcagaaaaactttttctttactcataa
gtttttgttcgtccatttccagaggccccttgaaaatgggtcctaccacc
ttttttgactcatttcaaccttttccaagctattttcttcaaaaacaaaa
ataaaacaatgcaatgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAG
ATCTTTTGGAAGACGGCGTTTGTccacggaagaatatttcaatgaattag
aaaaaagcccgcgcggtcagcgattctataaaaagcgaccgcgcaggctg
tctggggcgtccggggtagtctctcaaaaacaaataatacggaccccggg
cacgcatcaaaaaaaccccggactgtcccggggcataggcagggccgtga
aagtagacctagctctctcgatgcatttacaccactaTCGAGTAGTgtcg
acattagggtaccaattttcaaaaaactccgatcaaagattttttgcttg
gctgggattgagaagctttgtccagggttatataaaggtcagtggtctgG
CTCTGGGGTCTTGTAAACAGCCCAACCAACAGGACAGTCCTGGTGTGGTC
TATGGGGCAAAGCCCCAAGAAAATTATGCTTTTTTGCGGAATAAGTGCTA
TAATATCAAATATTTGAAGACATTTTTCACTACAGTAATTAACCTTTTTC
CTCCATagctaattttatttttcataaatattGAGTTCCAAAACTCAATT
AAAGATTCAGTTTCTACTACCATTATCCGGTAGCAGAAAGCCCCTGGAAA
TTTGCCTGAATTGGTGATTGGATACCGAGCGCCGAGAGATTGggtaacat
gcatagccctcaaatgaatgacctgtcagtatagacttaaactcgtatat
caagattacaggattcgagtacgggccgattttactttcgttttaaGTGG
Ttccattttcgatttcaagccaacatcttagcaacagggtgctcgcccat
agttacaggggtttgtgcaaaaaactaaacatagaaaattttccaaatcc
ctcATTTCGATTAggggtcttcgacaaaaaactttcgaattttttatcgg
cattgggccgataaggggGTAGGGGGGTCTAACTACATAGGGtaccgata
aaaaaacaagtattgggatgaaaatattttcagttaatttctttctgatt
tcgtccacaaactccactgaaagcatacaatttcacttgctttcaccttc
GCGCACAAATTCGCTACTTTAAAAGTCAGCGTGCTGCTGTTTCTTTCGAA
ATGTTGCAACTTCATCGCGtctttttaactttgttttgattaacaatatc
aatgcggatatgaacaaactcaatgttggtgcaaATACATAGACAAAAAT
TCAACGCGATTGCAGGCATGATTGGAAAAAATGTGTTTTCCAAGATGTAA
AAGTTGGTTTCGAAAAAGTTTGgccgataagagcaaggggggagggggtc
tggaGCTTATTGGctcaatgccgataaaaaatttgaaaattttttgtcga
agaccccTTAAAGCAGTTAAGAAATGACTTTTTTGCACCTAattcttcaa
aaagaaaatatttaagattttaagttcttcttttattcaatgatctTTTA
CGGcgctttgttgacaatctaactatCGCCTCAAATTCCCGGTTTCTTCT
gtgtaaattgaagatgagaagaAACCTAAGCCAcagatcacggattgaaa
caaatatataaacagatatgaagggtgggattttacagacacccatcttt
ttcttgggaagttaaTCTTCAAATTACTTTTCAAGGTTGACTTGgctcaa
atcttttcatctatggctcaaattttaggcaatttctgatagtttttgaa
aaagttaatttcattaaaaagtggcgggttattttttgatgaattccttt
agaagttttgcggcgcacttgtttgcttgcgagtcaagtgAACAATAGAG
CGCTTTCACAGCATTTTTCTTTGATGCGCATCTTGGCGGGACGCtaagtg
tgactaactgtttgtCAGTCAAGGATTATACCCTAAAGAGATATACTCAT
TTAAGAGAAGGTCTCTTAagatttctttctcttaacaaggagacttttct
ttcttcattAATTTTTGGCCTTCCCATCACTTTGCACAAGTTTTGAACTT
CATAGATTGACTCAGCAcgtttttttctcccttctagcaaaatttggttg
agttcTGCTTATGTTTCGTGGACCTAGCctgctgacttttagttttagtg
acttgttctcacttgtttgatttttgtaataaaaaaaaagtcattattgt
gaactttgaacattcTTTAAATGGAGGTATTTCCACTAACTGCGCAGACA
AATAGAGATGAAGCGGCAATCATGGCCTAGGGCGCTACTTAGTTCCGCCT
TATTTTGATAAGAGGAATAGCTTTTTCTAAACCTGGAATATTGAAGTTCC
GGCTGTACTGAACGAAAGTCCAAGCCCCGTTTCCCGATTTTCCCACTGCT
TCCCATTGCTTCCCATTGTTACTTAACTCTCGCATATAGCTCAAAAAAAG
TCTATTAACGAGATTGTTACagaaagtgctgggtcaaaaatgtAAATTAA
GCAAAtttcaagatatcggccaaaaagtGATTTTGACATTacgaaattcg
tcgaaaaaacatgtcataagtaagattcaaaGGATGTCATTATTAAAAAA
AGGCAATAACTTCAAGTCTAATAaagcaatcaacaccaaattttgacgtc
aaaaaatgatgacgttgttaaaaatttttcattctcgttttcatgttatt
agatgctgttttagagctttagaccGTGTCACTGGTCGAAATATTGAAAC
TACCATGAGTTGGctgatttatcaaaaatacgCACATGATTAGCAGAGCA
AGCGTTATCGTATGTATATCGCAGATATCTTGCTCCGGAATAACTGAAGT
GCACCAGAACATTCCGGAGTTCTGGTGTagaccaatcgccgaaagtgcTC
CGGAACACTGAAAGTGATCCAAAATCATCCGGTGTTCGGGAGCACGTAAA
AAAACGGTACTTTTTGCTCCGTACGTTTCCGGAGCGCCAGGAGGGTCCTA
GCAGAAAAGTTCTTATTATTGCTTGAACACTAATTTTTGAATCATACTCT
TTGCCTCAATGAAATATGTAGTACTAATATTTCAAATGATTAATGTTTTA
ATTGGAGTAAATGAAAATGGAtccaacaaaaaataaaacatttcagCTGC
AAGGACAATCTGGTGGTTTTAGTGATCGTTTAAATTCAATCTTTGGGAGC
TTGGATGAAAAACAATCAATAAATGAAGACTCTAACAAGATAATAAACAG
CAAAAATAATGATGAGAGAATATCAACAGAAAACAAGGAGAAAAGAGCTC
ATAGAGAATATCACCAAGCCGATAGTAGAAATGAAAAACAAGAGTTTAGT
AAACCTGGTGAAAGATCTCATCATAGAGAAAGTCGAGAACTTTATAAGCC
TCCCAAAAGGTGTCCAAGAGATAATAACGAATTCCAAAAACCTTATGACA
GACCACAAAGAGGACGTAGAAATGCAAGGGTACCTGATCATGTTCTTCAT
CCTGAAAAATACCAGAAATATAGGTACGTTTATTTGAACCTTTTGTTACA
TCTTTCTTGGCTCATGTTGATTAAAATGACAAATGGTGCCaaagatatat
atttttacaaaagCAAACTGACTGCTTTCTctgatattctttttttttct
tcatataaTTAATTATAGTTTAAGACTATGTAAAACTAggtatcttttga
aaaaaaatcttatgatTTATAACAAAGTAACCGAAAAcaagaaatttgat
tttgttcATCTTGAACCAGTTTGAACTAAAGttaaagacattttttgttt
atttctagtTTGAAGCAAGATGGAACACgtgattcaaaattaaaagGTGA
TGCCCTGAACAAAAAGATTGCATTAGATTTTATAGACAGTCTCAGAGGAG
AAAAAGATTTGGAGAATGAGGACTTCAACAGAGACAAGGGTgtcgatttc
aagccaaaatttagacAATCAAGTAGCAAAACTAATAATGAtgataataa
aataaattcaaaaagaCCTACTTTCCAATCATCACATGGAGCCAAAGCCA
GAGTTATGGAAACGTTTGAGTTTGGAAAATcctcaacattttcaaaaagt
aaacaaaaagaaatagaaatttcTGAGAAAGAGCCTTCTTCTAGCAAACC
AACTAAATCAGAAGACAAGGTGTCTACAGGTGGAGGAATAACACTTAACT
ATTATGAGGATGAAGAAGAGGATGAGACTTGAACataaaataatttatta
taGAGTTTTATTACAAATTTCCACGAGAATCCTATTACACTACTTGTCAT
TCTACAAAGAATTTTTAATACAATTTCTGCTTGGGATTATTACAAATCTG
TCTATGTTCAGGGAGTTTGGTGTTTCCCACATTCAATTATTCAATGAGCT
AACCTAATATAATATGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012681TCONS_00012681Clytia hemisphaericatranscript
TCONS_00012682TCONS_00012682Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012681-proteinTCONS_00012681-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:292357..301874 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.13	35.26	12.81	10.51	27.09	22.35	18.03	20.58	9.44	8.64	5.17	5.28	3.89	5.41	6.59	9.86	10.2	10.26	3.42	4.09	6.23	5.48	57.8	46.49	9.21	9.83	7.54	6.05	29.41	34.58