TCONS_00012505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012505
Unique NameTCONS_00012505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012505 ID=TCONS_00012505|Name=TCONS_00012505|organism=Clytia hemisphaerica|type=transcript|length=2429bp
ACTGCTTAGATATATCATTTTGTCTCGCACAGTAtcttaatttcttttta
ttgtgATTTTTAGTGAGAAAATTGCAGAATATAGTTGCAAAACATACCTT
TTCaccaaaaaattgcattctAATTCCTAATAATTTCAGAAGTaccacca
aaaagaaaaaatataagtaAAAACTGACATTACCTCCTTTTTTGACAGCA
TTTGTGGTAATAGCTGCAACATCAGAACCAGCACCAACCTCACTCACACC
CAAACATCCAATAAAATCTCCTGCAATGCTTGGtgccaaaaatgtttttc
tcaatTCATCACTCCCAAAATTTGTTAGAGCTGGAGTACACATATCACAT
TGCACACCAATTGCCATGGGGATTCCACCACAATCAATCATACCAAATTC
TTCGTGCAGCGCCATAGCATAAGAAAAGTCAAGCCCCATTCCACCATATT
CAACTGGTTTATTGACTCCTAAATAGCCAGCATTgccaagttttttgaaa
agttcatgTCCAGGGAAAGATCCTTGCTCCTCCCACTCTTCAACATAAGG
ATTGATTTCTTTATCAATGAATTTCCGAATGTTTCTTCGCAACTCAACAT
GATCTTCTGTGAAGACTGATTCATCAGCTAGACTATCTTGAACTTCATAG
TTAGATTCAAAAAGTCTTGATCTTTGTAGAGTATTAGACGAAGAAGTCAA
GTTTCTCTTGGATAGGATATTAAAAGTTCTTGGAAGGTACCTGGAAGTCT
TGAAAATACCAGCCATTTTTGCTTTGATTATGTAAGGTTCTGTCAGGAGT
GACCTTTGGACCAAAACAGAGCCAGTCTAGCTCTGCAACTTCTCATTTTT
TCCGAGAGTGTAAACCTTTTAGGTTAGTTAGGGGTAAACAAAAGccgatt
caaaatggtagcaaaaaaataatcatatgACGCTTTTTTCAAAACAGGAC
AAATGATCGACTTTGAAGTGACTGTCATGTGATTTTCTTATCAACTGATA
TTTGAAACCAATTTTGTTACGAAATAAAAATTGTACACTAAAAGAACACT
TGACATAGTTAGGAAACTCATTCCACTTTCTACAAGGCAGGCAGGAGGAA
AGACTCACAATTACTGCAAAATGATGAAAGGTTTAATCTTATTGGGTTTG
TTGGGGCTTTCCCTTGCCCATCTTGAGGTGATCGAAGATAAATCATGGCA
TTTATGGAAAGGAGTTCACAACAAATATTACCCCAACATGTTTGTTGAGA
AGATCAGATATAATATTTGGCAAGACAACAGCAATCGTATTGAAAACTTC
AACAAGTTGAACCAAGGATATTCTCTCCGTATGAATCATTTTGGTGATTT
GACCAACACTGAATACCGTCAACACATGAATGGTTACAAAATGAGATCCA
CAAAACATAGTGAAGCTGCTACCTTTCTTTCACCAACCAATGTCAAAGTA
CCAGACACTGTTGACTGGAGACAACAAGGATTCGTCACACCTGTCAAGAA
CCAAGGACAATGTGGATCATGCTGGGCTTTCTCCACCACTGGTTCATTGG
AAGGACAACATTTCAAGAAAACTGGAAAATTGGTCAGTCTCAGTGAACAA
AACTTGGTTGATTGTTCAAGCAAAGAAGGAAACATGGGATGTAATGGTGG
TTTGATGGATCAAGCTTTCGCCTACATCAAAACTAATGGTGGTATTGATA
CTGAAGAAAGCTACCCATACAAAGGAGCTGACGGACAATGTAAATTCGAC
GCAAAGAACATTGGAGCAAAcgacactggattcgttgacgTCAAGAGTGG
TGATGAAGATGCTTTGAAAACTGCTGTCTCCACAgTTGGACCAATCTCTG
TTGCCATTGATGCATCTCACTTCTCGTTCCAATTCTACCACTCTGGTGTC
TACAACTCATGGCTGTGCAGCTCTACACGTCTTGATCACGGTGTCTTAGC
TATCGGATACGGTACTTACCAAGGAAAGGACTACTGGCTCGTCAAGAACA
GCTGGGGAACAGGATGGGGATTAAAAGGTTACATCATGATGAGCcgaaac
aagaaaaatcaatgtGGTATCGCTACTCAAGCTTCATACCCACTCGTTTG
AAACTAACTAAAGACAACATGCTAGAGGATTTGTAGATGATTTTTTTGTA
GTGCATTTTTTTTACATAGGGTTTTCTTTAGTTGAAACTGATGCTCAGTT
TTAAGACAATTATAATCTTTCTCTTCTTGCATTTTTGTTGAATTCTTGAA
TTTATCACTGAGATTTATGAAAAGCACCGAGGCTCGATAAGGGTCATTCG
GAGGAAATTAGTGAAAGGTTCTCTTGTGAATCAGCATCAGCTAACGAGca
atttcatttaatttattatgatttttaattatttttgttaacgtttttta
aattttgattaatgGTATATATTGATAAG
Run BLAST on NCBI

transcript from alignment at sc0000145:276644..286584+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012505 ID=TCONS_00012505|Name=TCONS_00012505|organism=Clytia hemisphaerica|type=transcript|length=9941bp|location=Sequence derived from alignment at sc0000145:276644..286584+ (Clytia hemisphaerica)
ACTGCTTAGATATATCATTTTGTCTCGCACAGTAtcttaatttcttttta ttgtgATTTTTAGTGAGAAAATTGCAGAATATAGTTGCAAAACATACCTT TTCaccaaaaaattgcattctAATTCCTAATAATTTCAGAAGTaccacca aaaagaaaaaatataagtaAAAACTGACATTACCTCCTTTTTTGACAGCA TTTGTGGTAATAGCTGCAACATCAGAACCAGCACCAACCTCACTCACACC CAAACATCCAATAAAATCTCCTGCAATGCTTGGtgccaaaaatgtttttc tcaatTCATCACTCCCAAAATTTGTTAGAGCTGGAGTACACATATCACAT TGCACACCAATTGCCATGGGGATTCCACCACAATCAATCATACCTTTtag taaaaaatttaaataaattttaattatCTGTCTGATCTTTTAGTTTGGTT TTACAACTTTGCACACAAAGAAAATGGGGCTTGGAGTTTCTTGGCCAATA AATCTGTCTCTAATTCTTTTCCGATATACTGTTGGCAAGAGAGCCAGATC CCCGGGGGatcaaaaatggatgatgggtatgtgcggacggtaagggtcgg tttttttcacctttcaaagtctctctaagggtcggaaaattcaggatttt tagcaAATTTTTTGATTTCCAGAGAAAGAATTGTAATATTAAGTCTCTCT AAGGGTATGACTTTTTTCAAAAATCGAAAAAAAAATTCAAAAAGTTTCTC TAAGGGTCACCTTTTCAGCAAAAATCAGTCTCTCTAAGGGTTGGTTTTCG GAGGTCCCGTCCGCACATACCCCTAATTCGCCAACCCTAGTACCCCCCCC CCGAGCCAGATACAACTACAGTCCCCTGTCCATAACATTATAAGGTGTCA CAATTATAAACTTTTTGTTGAAAAAATGTTTATCTTCTGATCTCTAAAAA ATTCTTTCTGATAAAGAGAATTCCCAAAAGTTATAACGAGTAAAATAATT GCTTTCTCAagatttctaaattttaatcaaaatacgAGCACAAAAATCTG TGCAAGGTCTCTCCTGGCAGGCCAATCTGTTGCCatcataccgtaagttg gtctaatgtcgacaacCCTCATAAAATTCGGTCACCCTTCTTTACAGCTG GCGATAATAGAAAAGTTGGGATCACTGTTTGCTAATTAATGGTCAGAGGg aaatataacttttttcaatcagtgatttaGACCTACCTTTTAATCCCATC TATAAGAAAGGTGTCAGAATTGAATTAGGTGAGGTATGTCAACATTACAC CAATGTGATTAATTAATAGAATAGAATCCATAACCAGCCGCTAATTTTAA AAaccataaaacaaaagaaagtccgAAAAGATTCATTCTGAcatcaaaaa tcttgaagtaACAGACAAAGTGATCTCAAGTAAAATATGCTATATTTCGT ATTCTATCTAATACATCATTCAGGCAAAAAGTCAGTCTTTTTGCCTGAAT GATGTATTATttacttttgatacttttgatgggttttttgagtctctcaa tcatccaatttggaaATCCGATGATTCACCATTTCTCTTACACTGTTTGA ACCCGCTCTCCTGTAGGGATAATAATTCGGGAGCAGTGGTTCGTCCGGCA GTgtggaaagaaaaaggtcaagttGTCAAAGATAGAATTAGAATTAGATA GAAGCATATTTTAGCATATTTTACTTGAGATCACTTCGTCtgttatttca agatttttggtgtcagaatgaatctttttggactttcttttgttttatgg tTAATAGAATAGAATTATAtgacaaaaatcagaaagatgAATTCAGCCAA CAGGTTTTTGTCACAAGGTTTCTGGGCTAGGAGTTTCTAAGTTGTTTCTC TAAGTTATTTGGAGTGAAACATCCAATTTATGTCATTTTACTGAACTATT TATGagccttcatttttttttaaaatgaaatttggcataGTTTAAGACAG GTTTTTgtgcttttatttttttcaagttattcaTGAAGATCTgtttaata ttgaaataaaagatTATAATAAAAATCATTTGCGCTGTTTTAAGATGTCA CCTGTAGTAGAATTTTGATTAAAGAATATTGCTTGCTTCTAAATAAAACT GAAAAGattatgaaaaaaactgaaaaaatgaaaacagaaAAAGGCCTAAA ACCAAgttatgaaatatataaaaaaggcTATAAAACTTAAGTCAAAATAT GTGAAACAACAAATTACAGGCGTGAAAAACCTTTAGCATTGATAGATTCA ATAACGTCAAATTATGACACTTCACAAACCAAATATTGCCAAACTCAAGA ATGAAGTTAATTTAAATTATTGGAATTCCAAAACCCTAAGTATAAAAAAA ACTAACGCATGCAGTAGTTCAATTATGgtaacaaaaaattcaagattttc caGTGGAATTTTATATGGTAAAATAAAGGTCACTAATAACTAAAAaacac gtgcgtttggtttgggaacgcgaaacacgaacgcaaactacccatgtcta aacttttcaatatatctccagaactaacagattttttgaaattctgtaaa aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNACCCATTcattgttaatacattttttatttgaaagtaatctctt catggaataaaaagatatagtcaaatcttgtagggtcatttttcaaaaaa ttttttgccaaattcgattttcgcatttcgccattttaccctacgcaaac gcacgtgaaaAAGATAAGAACATAACATACCAAATTCTTCGTGCAGCGCC ATAGCATAAGAAAAGTCAAGCCCCATTCCACCATATTCAACTGGTTTATT GACTCCTAAATAGCCAGCATTgccaagttttttgaaaagttcatgTCCAG GGAAAGATCCTTGCTCCTCCCACTCTTCAACATAAGGATTGATTTCTTTA TCAATGAATTTCCGAATGTTTCTTCGCAACTCAACATGATCTTCTGTGAA GACTGATTCATCAGCTAGACTATCTTGAACTTCATAGTTAGATTCAAAAA GTCTTGATCTTTGTAGAGTATTAGACGAAGAAGTCAAGTTTCTCTTGGAT AGGATATTAAAAGTTCTTGGAAGGTACCTGGAAGTCTTGAAAATACCAGC CATTTTTGCTTTGATTATGTAAGGTTCTGTCAGGAGTGACCTTTGGACCA AAACAGAGCCAGTCTAGCTCTGCAACTTCTCATTTTTTCCGAGAGTGTAA ACCTTTTAGGTTAGTTAGGGGTAAACAAAAGccgattcaaaatggtagca aaaaaataatcatatgACGCTTTTTTCAAAACAGGACAAATGATCGACTT TGAAGTGACTGTCATGTGATTTTCTTATCAACTGATATTTGAAACCAATT TTGTTACGAAATAAAAATTGTACACTAAAAGAACACTTGACATAGTTAGG AAACTCATTCCACTTTCTACAAGGCAGGCAGGAGGAAAGGTAaccatttt tatatattttttatatcagCTCTTCTATCTTTTTTAATTTAGTCTTCTTA GTTTTATTTATAGCTTATCTTGTTTTCCGAAAGTGGAAAATTTCAGGAGG AAATATTTCTTgtgaaatcaaaagaaaagaatgcTGGCCAATTTCTGCCA TCAGTCTGTCAGTTGTTATGCAATTTGGCAGCACAGCTTTCTGTGAAATT TTGAGCtcgatattttgtaaaaaaaattgtcgtatggaacaaaagaaaat agtcaaagattaaaaaaatttacagttaACTTAAATTGTAATTGATAGCA AGGTGTGGggcttttaaagtttttaattatGAATGGCAGTTTTCAGGAGC TTAATCTTGGCACCAGTTTCAACTTTCCCCCAACTTGCCTTcctcgaaaa tgaagaagaagaagaaatttgcGGTGTCACGATGGAGCACATGACGTCAT CCTAGCGGCAAATTACACACTTGTAATTTGTCCAGTATATTGGGGGATGG GTGGTTTGATGGCGCGGGCGACCTCTTATTCTCTAATCGAGGTTTGCCAT TGACCTTTTCGTCTTTCCATCCgtcatattgaattgtatgcaaaattatg gtggccgaattgccatggtgaaattcccttttagaaagtatgcaaaacat gtgcaaaaagaaagtattaatacaAAACTACATGCATAATTTTCAATTAc aattaaagtgtaatcttgtagaagaaagattaaattagcttttcttgaaa actaaaaacaattatattcactcatctcttagaacaagcagttcaaaaaa caataacattagacataaagtcaaactgaaaaatcaccagcgAAGGTAAA AATTATTCCTTATTCGGCTGatggtaaattattctcctgggaatagagcc gccaaatgatcaaatcaaaacattgataatgtgtgacgtcataattactg ctttcagtttgcgtgttttgaaagtttgatgtgtgtactccgtctttgtg gagttttttaatggcatgaaaacagaatatgctatgtctttaagaacaaa tttctaaaaggcttttgttattctgtaaatatttatttttgaattaagaa attccatcttatATTGTTCTaatattataatatttatttataagatgctt tgttgtctttttaatctttgtgtaaatttgcatatgttttgcatactttc caactaaatccaaccacggcattttcgttcctgtgtttttgcatacaatt taagatggcggatggaaaggcagACAGGTCTATTTTGAAGgatgacaaaa aattaaaaagggcgcgctatcataGCAGTGAAAATTCGTTCGCCATGGTC TCTGTTTCAGAAATGTTGGTTCGTTTGTGTTGAAATGCTAAATTTTTGGA CACAAAAATACAATTGGGTATGGGGATGTGCCACTGATCAAGGTCCCTTT TTAGTCTCTTTAggctgaagatatctgacaggggtCCCTACTTTACTAAT TTTTAAAGATGTGTATCTTTCAAGGTTGGCTTTttgttatttattattat ttttgttatcATTATTATAACGAATGCAAAGTTCAGGCACGCTGTTGGCC TCTAGAACtggtctttgtttatttacaataaatagCGTAAATCATGGTTT GCCCAtgctttgtttaaaattttccttaaacGGTTTTATTGATGATACta attattttgtaaaattttcagggtaaaatgggaaaattttcaatttttca atctgACAGGTTCCCAAATTTGCCTAACATTCATATCTGAGGGAGTAGTG CCCCCTGGCTAGTACACAGACCTTATGCAAAATTAAGTCTCTAATGTTGT ATTCATTATTTCATGATGCATTTTTAAAAAGTCAACCTTTTTGTATTTAG ACTCACAATTACTGCAAAATGATGAAAGGTTTAATCTTATTGGGTTTGTT GGGGCTTTCCCTTGCCCATCTTGAGGTGATCGAAGATAAATCATGGCATT TATGGAAAGGAGTTCACAACAAATATTACCCCAACATGTTTGTTGAGAAG ATCAGATATAATATTTGGCAAGACAACAGCAATCGTATTGAAAACTTCAA CAAGTTGAACCAAGGATATTCTCTCCGTATGAATCATTTTGGTGATTTGA CCAACACTGAATACCGTCAACACATGAATGGTTACAAAATGAGATCCACA AAACATAGTGAAGCTGCTACCTTTCTTTCACCAACCAATGTCAAAGTACC AGACACTGTTGACTGGAGACAACAAGGATTCGTCACACCTGTCAAGAACC AAGGACAATGTGGATCATGCTGGGCTTTCTCCACCGTAagaattcaaaac aaattttctacAAATATTCTTATTGATGCATTTTTAGTAAGAAATAAACC AAGGTAAATTACTGCATGCCTATAGTTTCCAAAGACTTTGGTATTTCCAC CACTCCAAAAATTACATTGATACAACAAATTTGGATATCAGTAATTCAAC CAAGtgtaggattttttattttgacatttttatatttttttattgttaca CATTCGatagttttattgttaaaatcaattcaaactttaaaaatgaCTTT GCATGATTTCGTTTGAGTATTGTGTTTCTTATATGATTTTTCGGATACAA TAACATGTTCCGTATTTTGACATTTGCAGACTGGTTCATTGGAAGGACAA CATTTCAAGAAAACTGGAAAATTGGTCAGTCTCAGTGAACAAAACTTGGT TGATTGTTCAAGCAAAGAAGGAAACATGGGATGTAATGGTGGTTTGATGG ATCAAGCTTTCGCCTACATCAAAACTAATGGTGGTATTGATACTGAAGAA AGCTACCCATACAAAGGAGCTGTAAGTGTTTaacatagtccgtataaaaa accctggtctagACGCGTattgttgtaactttttgttaactttttccttt gttaaaaaCGATTACAAAAATCCaattgctcagtttttgatcacgttacc aaatactCCTGTTAGGATTGGTTTGAaagttaatcacatgatcaaaaagg gagcaaaacaaaataatttctcaacgcaagctCAAGTATAGAGCAAAAAT AGAAAGAAACGAAAGGCTTATACGGACCATGGTGTTAACTTATACATAGA TTTGTATATTTATTTGAAACGGGAAAAAACCTctacttttttattatttt ataatatttCGCGTTAACATTGACGGactcaaatttgaattttattgggT TTATGTAGGTTTTTTTTCCGACGGAGACGATTAGCCTCATATTTGTCTAG ATTATAATCAGCTAAAAAGGACGATAAAACAGCACTTTTATCGTTCTCTA TTTCAAGGGTCAAAACTGTGGGttttctaaatcgcttcagttaTTCCGCC GCCCTCAAAAGGATGGTTGGATAAAAAATATGATTGAATGTCTGTATAAT TATTTTAAACGGGAGAAAGCCTCTTATATCTCTTATTCTGAGATTACATT ATCTTTTCATAAGCGTCTGATTTTTATCTGGAAGTGCTATCTGTATGAAG TAAAGTTTCAACAGTAGATTTTTTCAACATCTATCTAATAGCTTAAAACA TCTATAACCCTTTAATACTTTTTGCATTAATTTACAGTCCCCTGGAAGGA AAGTAATAAATAGTTTTACTGTTGAGAATCACATATTATTGATAAAATAG GACcgtaataatttttcattttgatttttacaagGACGGACAATGTAAAT TCGACGCAAAGAACATTGGAGCAAAcgacactggattcgttgacgTCAAG AGTGGTGATGAAGATGCTTTGAAAACTGCTGTCTCCACAggtaataaaaa ttttctttctattcAAACTCTTTCCAGTGTGCAAAAGTCTTCTTTCTCAA CGGGtacaaaaatagtttttttggtctccaaattcaacaaaattctgGTG AATTTGAAGGGTCTTGCTTATTTGTTGTTTAGAGTTTAATTTTCCGAGCA AGAACCTTTACTTTGAACACTGTCTTTCTCATTACATCTATCAACAGTTG GGTGTATTTCTGATTACTCATAActgatgtttttaaaacatcaGTAATTA CACTTGTGTGTGTCCAACATAGCTAAATAACGATTTCAGCGCTATTGCTG AGCTTTCTTTCTTACCTTACCACAAAATTTTTGACCGTACAAATCCCCTA GAAAATACTCAGAAAAGATTTCTTATTATCTTATTAACAAAacttctaat tttcactttagTTGGACCAATCTCTGTTGCCATTGATGCATCTCACTTCT CGTTCCAATTCTACCACTCTGGTGTCTACAACTCATGGCTGTGCAGCTCT ACACGTCTTGATCACGGTGTCTTAGCTATCGGATACGGTACTTACCAAGG AAAGGACTACTGGCTCGTCAAGAACAGGTGAGAGTAATGGAATCATTGgt attcatttttgattttcctgaTGGATATAATACAACATTTCGTTATTGTC GCAACCAATCATTAAAAAGAGAAGTAAAGAGACTGGGAAAGTTTTTTCTA ATACgctctttttataaaaaccagtaaattttggttcAGACTGGGCTGCT TTTTGAAATTGTCAGGCTTAATATTCTTACGATGTTCCTAATACGCttag ttttttttacttaaaaactgaaaatttgttTAAATCTGTACTTCTTTGTA ATTTCTAAACTCTTAGGATCACATTGCTCTTCATCCTTTGTTCCTGACTG TTGTCAAAAGTAAGATAAGAGAAGGCAGAAAAGTCGACCGTCTAAACTAG ATCATAGTCTTTCTTTTAAGAACAAGTATAAACCCCTCAAATTGGATATC AATTAGATCCTATGTTAtgtttatctggcacccagatggtgaaattttca tccgacacgctaaaggcctgaaggtcgggaaaatctTCGGGGAAATTGGC CGCTCCTTTAgggctttagcgtgggcggccgccaatccaccatcggaata tcaaataaatattatgtccaaaaaatctttctcttcatgattttctctct ttttgctTTCTAGCTGGGGAACAGGATGGGGATTAAAAGGTTACATCATG ATGAGCcgaaacaagaaaaatcaatgtGGTATCGCTACTCAAGCTTCATA CCCACTCGTTTGAAACTAACTAAAGACAACATGCTAGAGGATTTGTAGAT GATTTTTTTGTAGTGCATTTTTTTTACATAGGGTTTTCTTTAGTTGAAAC TGATGCTCAGTTTTAAGACAATTATAATCTTTCTCTTCTTGCATTTTTGT TGAATTCTTGAATTTATCACTGAGATTTATGAAAAGCACCGAGGCTCGAT AAGGGTCATTCGGAGGAAATTAGTGAAAGGTTCTCTTGTGAATCAGCATC AGCTAACGAGcaatttcatttaatttattatgatttttaattatttttgt taacgttttttaaattttgattaatgGTATATATTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007029XLOC_007029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012505-exon-sc0000145-1491911889:276644..277032TCONS_00012505-exon-sc0000145-1491911889:276644..277032Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:276644..277032TCONS_00012505-exon-sc0000145-1510915933:276644..277032Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:276644..277032TCONS_00012505-exon-sc0000145-1575043694:276644..277032Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:280370..281082TCONS_00012505-exon-sc0000145-1491911889:280370..281082Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:280370..281082TCONS_00012505-exon-sc0000145-1510915933:280370..281082Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:280370..281082TCONS_00012505-exon-sc0000145-1575043694:280370..281082Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:282994..283428TCONS_00012505-exon-sc0000145-1491911889:282994..283428Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:282994..283428TCONS_00012505-exon-sc0000145-1510915933:282994..283428Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:282994..283428TCONS_00012505-exon-sc0000145-1575043694:282994..283428Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:283773..283964TCONS_00012505-exon-sc0000145-1491911889:283773..283964Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:283773..283964TCONS_00012505-exon-sc0000145-1510915933:283773..283964Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:283773..283964TCONS_00012505-exon-sc0000145-1575043694:283773..283964Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:284828..284933TCONS_00012505-exon-sc0000145-1491911889:284828..284933Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:284828..284933TCONS_00012505-exon-sc0000145-1510915933:284828..284933Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:284828..284933TCONS_00012505-exon-sc0000145-1575043694:284828..284933Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:285355..285520TCONS_00012505-exon-sc0000145-1491911889:285355..285520Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:285355..285520TCONS_00012505-exon-sc0000145-1510915933:285355..285520Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:285355..285520TCONS_00012505-exon-sc0000145-1575043694:285355..285520Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1491911889:286157..286584TCONS_00012505-exon-sc0000145-1491911889:286157..286584Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1510915933:286157..286584TCONS_00012505-exon-sc0000145-1510915933:286157..286584Clytia hemisphaericaexon
TCONS_00012505-exon-sc0000145-1575043694:286157..286584TCONS_00012505-exon-sc0000145-1575043694:286157..286584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:276644..286584 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.1449 26.6714 20.251 23.2212 16.5678 11.2619 17.0364 16.3409 37.1708 27.6683 44.6493 26.9014 49.8437 59.6994 180.228 193.384 117.923 116.752 116.46 115.201 85.9278 80.8328 199.548 200.706 68.7345 84.5741 186.527 278.247 891.631 730.094
Blast
BLAST of TCONS_00012505 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 3.957e-109
Identity = 170/313 (54.31%), Postives = 212/313 (67.73%), Query Frame = 2
Query: 1187 DKSWHLWKGVHNKYYPNMFVEKIRYNIWQDNSNRIE----NFNKLNQGYSLRMNHFGDLTNTEYRQHMNGYKMRSTKHSEAATFLSPTNVKVPDTVDWRQQGFVTPVKNQGQCGSCWAFSTTGSLEGQHFKKTGKLVSLSEQNLVDCSSKEGNMGCNGGLMDQAFAYIKTNGGIDTEESYPYKGADGQCKFDAKNIGANDTGFVDVKSGDEDALKTAVSTVGPISVAIDASHFSFQFYHSGVYNSWLCSSTRLDHGVLAIGYGTYQGKD-----YWLVKNSWGTGWGLKGYIMMSRNKKNQCGIATQASYPLV 2098
            D  W+ WK  H + Y     E  R  +W+ N   IE     +++   G+++ MN FGD+TN E+RQ M  +  R+ K  +   F  P  + +P +VDWR++G+VTPVKNQ QCGSCWAFS TG+LEGQ F+KTGKLVSLSEQNLVDCS  +GN GCNGG M +AF Y+K NGG+D+EESYPY   D  CK+  +N  ANDTGF  V  G E AL  AV+TVGPISVA+DA H SFQFY SG+Y    CSS  LDHGVL +GYG ++G +     YWLVKNSWG  WG  GY+ ++++K N CGIAT ASYP V
Sbjct:   26 DTKWYQWKATHRRLY-GANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCF--RNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYG-FEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334          
The following BLAST results are available for this feature:
BLAST of TCONS_00012505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL23.957e-10954.31Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
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