TCONS_00012224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012224
Unique NameTCONS_00012224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=transcript|length=523bp
TAACGTTAACCATGTTTGTTTTTTACGTCACGCTGTCAATGGTAACAATA
AATTGCCGTGGAAACCAACTTATCGCGTATTGCCAAGATTCTTGTTTCAC
GAAACTTATTGTACTCATTTTATCCAACCTTGCTGGCTTCTTATTTCCTT
TCACACGACAAACGATGGAGAGCCTATTTCACATTTTTCTGGTCTCCTCT
GCATTGTTTTTATTCGTCATGTTTTTCACGTATTTAGACTGTGCTCATGC
GTTTCGCATTATATGGCTTCGCAAGGCTAGACGTTCAGCTGATGAGCCGA
CCTGTTATTTATGTACATGGCTATTTCTCATCCATCTCACGACTGCATTC
TTGTATGCCATTTCACTGGATTTGATTCTagcgtttttctttttcaacaa
attggAACAGTGCTTATCGACGATCGTGTTCTTGGGAATCAACATTTGTT
TATGTCTAATATGTTGCACTATATCTTATTTCCCAAATCTACGGCAACGA
GAATCGTCAAGCCAAATCGTATT
Run BLAST on NCBI

protein sequence of TCONS_00012224-protein

>TCONS_00012224-protein ID=TCONS_00012224-protein|Name=TCONS_00012224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
TLTMFVFYVTLSMVTINCRGNQLIAYCQDSCFTKLIVLILSNLAGFLFPF
TRQTMESLFHIFLVSSALFLFVMFFTYLDCAHAFRIIWLRKARRSADEPT
CYLCTWLFLIHLTTAFLYAISLDLILAFFFFNKLEQCLSTIVFLGINICL
CLICCTISYFPNLRQRESSSQIV
Run BLAST on NCBI

transcript from alignment at sc0000141:63876..64398

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000141:63876..64398 (Clytia hemisphaerica)
AATACGATTTGGCTTGACGATTCTCGTTGCCGTAGATTTGGGAAATAAGA
TATAGTGCAACATATTAGACATAAACAAATGTTGATTCCCAAGAACACGA
TCGTCGATAAGCACTGTTccaatttgttgaaaaagaaaaacgctAGAATC
AAATCCAGTGAAATGGCATACAAGAATGCAGTCGTGAGATGGATGAGAAA
TAGCCATGTACATAAATAACAGGTCGGCTCATCAGCTGAACGTCTAGCCT
TGCGAAGCCATATAATGCGAAACGCATGAGCACAGTCTAAATACGTGAAA
AACATGACGAATAAAAACAATGCAGAGGAGACCAGAAAAATGTGAAATAG
GCTCTCCATCGTTTGTCGTGTGAAAGGAAATAAGAAGCCAGCAAGGTTGG
ATAAAATGAGTACAATAAGTTTCGTGAAACAAGAATCTTGGCAATACGCG
ATAAGTTGGTTTCCACGGCAATTTATTGTTACCATTGACAGCGTGACGTA
AAAAACAAACATGGTTAACGTTA

Coding sequence (CDS) from alignment at sc0000141:63876..64398

>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000141:63876..64398 (Clytia hemisphaerica)
TACGATTTGGCTTGACGATTCTCGTTGCCGTAGATTTGGGAAATAAGATA
TAGTGCAACATATTAGACATAAACAAATGTTGATTCCCAAGAACACGATC
GTCGATAAGCACTGTTccaatttgttgaaaaagaaaaacgctAGAATCAA
ATCCAGTGAAATGGCATACAAGAATGCAGTCGTGAGATGGATGAGAAATA
GCCATGTACATAAATAACAGGTCGGCTCATCAGCTGAACGTCTAGCCTTG
CGAAGCCATATAATGCGAAACGCATGAGCACAGTCTAAATACGTGAAAAA
CATGACGAATAAAAACAATGCAGAGGAGACCAGAAAAATGTGAAATAGGC
TCTCCATCGTTTGTCGTGTGAAAGGAAATAAGAAGCCAGCAAGGTTGGAT
AAAATGAGTACAATAAGTTTCGTGAAACAAGAATCTTGGCAATACGCGAT
AAGTTGGTTTCCACGGCAATTTATTGTTACCATTGACAGCGTGACGTAAA
AAACAAACATGGTTAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006877XLOC_006877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012224-proteinTCONS_00012224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012224-exon-sc0000141-1491911889:63876..64398TCONS_00012224-exon-sc0000141-1491911889:63876..64398Clytia hemisphaericaexon
TCONS_00012224-exon-sc0000141-1510915933:63876..64398TCONS_00012224-exon-sc0000141-1510915933:63876..64398Clytia hemisphaericaexon
TCONS_00012224-exon-sc0000141-1575043694:63876..64398TCONS_00012224-exon-sc0000141-1575043694:63876..64398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:63876..64398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.304737	0	1.01683	1.35992	0.380846	0.23587	0.915763	0.677235	0.976869	0.6243	0.705732	1.51472	1.18746	1.04323	0	0	0.546209	0.319706	0.259096	0.58889	0.121309	0.21653	0.154927	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005016TDE1/TMS
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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