TCONS_00012224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012224
Unique NameTCONS_00012224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=transcript|length=523bp
TAACGTTAACCATGTTTGTTTTTTACGTCACGCTGTCAATGGTAACAATA
AATTGCCGTGGAAACCAACTTATCGCGTATTGCCAAGATTCTTGTTTCAC
GAAACTTATTGTACTCATTTTATCCAACCTTGCTGGCTTCTTATTTCCTT
TCACACGACAAACGATGGAGAGCCTATTTCACATTTTTCTGGTCTCCTCT
GCATTGTTTTTATTCGTCATGTTTTTCACGTATTTAGACTGTGCTCATGC
GTTTCGCATTATATGGCTTCGCAAGGCTAGACGTTCAGCTGATGAGCCGA
CCTGTTATTTATGTACATGGCTATTTCTCATCCATCTCACGACTGCATTC
TTGTATGCCATTTCACTGGATTTGATTCTagcgtttttctttttcaacaa
attggAACAGTGCTTATCGACGATCGTGTTCTTGGGAATCAACATTTGTT
TATGTCTAATATGTTGCACTATATCTTATTTCCCAAATCTACGGCAACGA
GAATCGTCAAGCCAAATCGTATT
Run BLAST on NCBI

protein sequence of TCONS_00012224-protein

>TCONS_00012224-protein ID=TCONS_00012224-protein|Name=TCONS_00012224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
TLTMFVFYVTLSMVTINCRGNQLIAYCQDSCFTKLIVLILSNLAGFLFPF
TRQTMESLFHIFLVSSALFLFVMFFTYLDCAHAFRIIWLRKARRSADEPT
CYLCTWLFLIHLTTAFLYAISLDLILAFFFFNKLEQCLSTIVFLGINICL
CLICCTISYFPNLRQRESSSQIV
Run BLAST on NCBI

transcript from alignment at sc0000141:63876..64398

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000141:63876..64398 (Clytia hemisphaerica)
AATACGATTTGGCTTGACGATTCTCGTTGCCGTAGATTTGGGAAATAAGA TATAGTGCAACATATTAGACATAAACAAATGTTGATTCCCAAGAACACGA TCGTCGATAAGCACTGTTccaatttgttgaaaaagaaaaacgctAGAATC AAATCCAGTGAAATGGCATACAAGAATGCAGTCGTGAGATGGATGAGAAA TAGCCATGTACATAAATAACAGGTCGGCTCATCAGCTGAACGTCTAGCCT TGCGAAGCCATATAATGCGAAACGCATGAGCACAGTCTAAATACGTGAAA AACATGACGAATAAAAACAATGCAGAGGAGACCAGAAAAATGTGAAATAG GCTCTCCATCGTTTGTCGTGTGAAAGGAAATAAGAAGCCAGCAAGGTTGG ATAAAATGAGTACAATAAGTTTCGTGAAACAAGAATCTTGGCAATACGCG ATAAGTTGGTTTCCACGGCAATTTATTGTTACCATTGACAGCGTGACGTA AAAAACAAACATGGTTAACGTTA

Coding sequence (CDS) from alignment at sc0000141:63876..64398

>TCONS_00012224 ID=TCONS_00012224|Name=TCONS_00012224|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000141:63876..64398 (Clytia hemisphaerica)
TACGATTTGGCTTGACGATTCTCGTTGCCGTAGATTTGGGAAATAAGATA
TAGTGCAACATATTAGACATAAACAAATGTTGATTCCCAAGAACACGATC
GTCGATAAGCACTGTTccaatttgttgaaaaagaaaaacgctAGAATCAA
ATCCAGTGAAATGGCATACAAGAATGCAGTCGTGAGATGGATGAGAAATA
GCCATGTACATAAATAACAGGTCGGCTCATCAGCTGAACGTCTAGCCTTG
CGAAGCCATATAATGCGAAACGCATGAGCACAGTCTAAATACGTGAAAAA
CATGACGAATAAAAACAATGCAGAGGAGACCAGAAAAATGTGAAATAGGC
TCTCCATCGTTTGTCGTGTGAAAGGAAATAAGAAGCCAGCAAGGTTGGAT
AAAATGAGTACAATAAGTTTCGTGAAACAAGAATCTTGGCAATACGCGAT
AAGTTGGTTTCCACGGCAATTTATTGTTACCATTGACAGCGTGACGTAAA
AAACAAACATGGTTAACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006877XLOC_006877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012224-proteinTCONS_00012224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012224-exon-sc0000141-1491911889:63876..64398TCONS_00012224-exon-sc0000141-1491911889:63876..64398Clytia hemisphaericaexon
TCONS_00012224-exon-sc0000141-1510915933:63876..64398TCONS_00012224-exon-sc0000141-1510915933:63876..64398Clytia hemisphaericaexon
TCONS_00012224-exon-sc0000141-1575043694:63876..64398TCONS_00012224-exon-sc0000141-1575043694:63876..64398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:63876..64398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.51472 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.304737 0 1.01683 1.35992 0.380846 0.23587 0.915763 0.677235 0.976869 0.6243 0.705732 1.51472 1.18746 1.04323 0 0 0.546209 0.319706 0.259096 0.58889 0.121309 0.21653 0.154927 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005016TDE1/TMS
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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