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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012204 ID=TCONS_00012204|Name=TCONS_00012204|organism=Clytia hemisphaerica|type=transcript|length=5399bpRun BLAST on NCBI protein sequence of TCONS_00012204-protein >TCONS_00012204-protein ID=TCONS_00012204-protein|Name=TCONS_00012204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp RVRDVCEHILLSGECDIARKTEEYLWRKAFYDIIHKLKMDKKGLATDSMLRun BLAST on NCBI transcript from alignment at sc0000141:223635..250159- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012204 ID=TCONS_00012204|Name=TCONS_00012204|organism=Clytia hemisphaerica|type=transcript|length=26525bp|location=Sequence derived from alignment at sc0000141:223635..250159- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000141:223635..250159- >TCONS_00012204 ID=TCONS_00012204|Name=TCONS_00012204|organism=Clytia hemisphaerica|type=CDS|length=45120bp|location=Sequence derived from alignment at sc0000141:223635..250159- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012204 vs. Swiss-Prot (Human)
Match: SMG5 (Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3) HSP 1 Score: 179.489 bits (454), Expect = 2.683e-45 Identity = 112/356 (31.46%), Postives = 186/356 (52.25%), Query Frame = 3
Query: 3 RVRDVCEHILLSGECDIARKTEEYLWRKAFYDIIHKLKMDKKGLATDSMLLSVYTSHLQGALGFYHNLLVRLRNRYCIALQGVIDWIGIPPDSDIHQK----VTKDQIEWAFKACQRCLIYLGDIARYQLDVSSEPNPRHAERYYHLAILLNPAVGMPHNQIGTLKQSQSELCESCYHYMRCLMAPSPFEGAEENVKRVLEK-----HNVMMTELQATCLKNNTLIDTKTQFTAAFLSLQEVLFGLRKITNEELGQWCQSVISLFSLILNEKLQISQSPTPPITNGVGGGHQYRQHQEHESLNVVQEDSISSGMLLKMMGMTILDIVKLKKKGSDIGSAAVAFASTLLSELLSFIS 1043
++R++C ++ D RK EE LWRK +Y++I +K +KK + + S L Y +HL +GFY +LL+ +++ Y + LQ IDW + D I K + +++WA AC RCL+YLGD++RYQ +++ AER+Y+ A+ + P +GMP NQ+GTL S+ E+ Y Y+RC+ + FEGA N+KR+ +K H + E + D K + F+ LQ +L + EL CQSV+ F+L L + SP + + +E+ES D ++ +M+ + ++ + L++ GS SAA+AF L S L++ ++
Sbjct: 58 KLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVT-DPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIK-RLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCL---FYLPSSPNLSLAS--------EDEEEYESGYAFLPDL----LIFQMVIICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHVN 396 HSP 2 Score: 157.147 bits (396), Expect = 2.031e-38 Identity = 116/424 (27.36%), Postives = 192/424 (45.28%), Query Frame = 3
Query: 1560 EDFEKINNEAFLPVVKVLFDWLRINPDILKTSGKAAPVLWQRIADVLNILPSQKVVHTTVMYFSQRRRLPLWLRGDLEDGVEKPQKRALP---EDITFYGAPGFEDLHKSLDIKWFRGLTNSELYQFALRVTYLRNFGHFISNNTDVPCFSWDEKTDRFMVDTEQLPQPPAVTTNHQHMNGHADHTHSNGNSITTTPAAPPHPRKTLEQRNEMMKALAKQKLKHEVSEMQMKLKTEEH----SVYLVLDTPALCRHLSLLRTLVKSSNFVVIVPIQVIAALDELKKYNPGARDAIKFLEDEIKHGNRWLKTQKEHETITDALNSKKKKNRDVEEWRFIQVVKCCIYFAEKHQENSSPTPIDHTSSNMVTLLTS----DSSIMTSPPGNSTKMANLGTRVSQYALDICKTKGIRVEPVVDFYKRW 2798
E + + E LP VKV DWLR NPD++ +++ LW R++ +LN+LP+ + + + + DL +G E P + ED+ P H+ + R L S L + +R+ +R+FGHFI+ ++ + + S S+ A + +RN +M+ +A+ +L+ EVS+++ L+ + S YLV DT ALC HL ++R L S F+VI+P VI LD LKK +PGARD I++LE E K GNR+++ QKE + + K K +D + W +++ C Q + + S MVT++T + S+++ P M + ++DI + V+DFYK+W
Sbjct: 644 EKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQ-------DLLEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLL-STLEESVVRICCIRSFGHFIARLQG------------------------SILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKE---VGKSFERHKLKRQDADAWTLYKILDSC------KQLTLAQGAGEEDPSGMVTIITGLPLDNPSVLSGP------MQAALQAAAHASVDI--------KNVLDFYKQW 1012 The following BLAST results are available for this feature:
BLAST of TCONS_00012204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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