TCONS_00012204-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012204-protein
Unique Name	TCONS_00012204-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	939

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012204-protein ID=TCONS_00012204-protein|Name=TCONS_00012204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp
RVRDVCEHILLSGECDIARKTEEYLWRKAFYDIIHKLKMDKKGLATDSML
LSVYTSHLQGALGFYHNLLVRLRNRYCIALQGVIDWIGIPPDSDIHQKVT
KDQIEWAFKACQRCLIYLGDIARYQLDVSSEPNPRHAERYYHLAILLNPA
VGMPHNQIGTLKQSQSELCESCYHYMRCLMAPSPFEGAEENVKRVLEKHN
VMMTELQATCLKNNTLIDTKTQFTAAFLSLQEVLFGLRKITNEELGQWCQ
SVISLFSLILNEKLQISQSPTPPITNGVGGGHQYRQHQEHESLNVVQEDS
ISSGMLLKMMGMTILDIVKLKKKGSDIGSAAVAFASTLLSELLSFISNYM
KQAYPALDSEKGKDQFSKMRNRIIMSQRKRRRRRKFSSQSSDHSNSDDEH
LIFKQDEDLSDLSEGELDQDFSDTLSEDSDSVIEETSDAENDLEVERIVL
ERGARPPINGKISKSERENLSSLSKAGLLLNKQLKKENNKMHLNSLSNGI
VHDFTLEHVDFINQAACLLEDFEKINNEAFLPVVKVLFDWLRINPDILKT
SGKAAPVLWQRIADVLNILPSQKVVHTTVMYFSQRRRLPLWLRGDLEDGV
EKPQKRALPEDITFYGAPGFEDLHKSLDIKWFRGLTNSELYQFALRVTYL
RNFGHFISNNTDVPCFSWDEKTDRFMVDTEQLPQPPAVTTNHQHMNGHAD
HTHSNGNSITTTPAAPPHPRKTLEQRNEMMKALAKQKLKHEVSEMQMKLK
TEEHSVYLVLDTPALCRHLSLLRTLVKSSNFVVIVPIQVIAALDELKKYN
PGARDAIKFLEDEIKHGNRWLKTQKEHETITDALNSKKKKNRDVEEWRFI
QVVKCCIYFAEKHQENSSPTPIDHTSSNMVTLLTSDSSIMTSPPGNSTKM
ANLGTRVSQYALDICKTKGIRVEPVVDFYKRWTTRNGPP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006865	XLOC_006865	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012204	TCONS_00012204	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002716	PIN_dom
IPR018834	DNA/RNA-bd_Est1-type
IPR019458	EST1
IPR029060	PIN_domain-like
IPR011990	TPR-like_helical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 735..755
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 694..721
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..440
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 360..400
IPR002716	PIN domain	PFAM	PF13638	PIN_4	coord: 758..888 e-value: 1.8E-10 score: 41.2
IPR018834	DNA/RNA-binding domain, Est1-type	PFAM	PF10373	EST1_DNA_bind	coord: 137..348 e-value: 1.9E-27 score: 96.4
IPR019458	Telomerase activating protein Est1	PFAM	PF10374	EST1	coord: 20..127 e-value: 3.0E-20 score: 73.1
IPR029060	PIN domain-like	GENE3D	3.40.50.1010		coord: 755..936 e-value: 1.3E-23 score: 83.5
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 531..682 coord: 5..261 coord: 298..354

Blast

[Close]

BLAST of TCONS_00012204-protein vs. Swiss-Prot (Human)
Match: SMG5 (Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3)

HSP 1 Score: 306.99 bits (785), Expect = 1.733e-89
Identity = 280/1037 (27.00%), Postives = 453/1037 (43.68%), Query Frame = 0

Query:    1 RVRDVCEHILLSGECDIARKTEEYLWRKAFYDIIHKLKMDKKGLATDSMLLSVYTSHLQGALGFYHNLLVRLRNRYCIALQGVIDWIGIPPDSDIHQK----VTKDQIEWAFKACQRCLIYLGDIARYQLDVSSEPNPRHAERYYHLAILLNPAVGMPHNQIGTLKQSQSELCESCYHYMRCLMAPSPFEGAEENVKRVLEK-----HNVMMTELQATCLKNNTLIDTKTQFTAAFLSLQEVLFGLRKITNEELGQWCQSVISLFSLILNEKLQISQSPTPPITNGVGGGHQYRQHQEHESLNVVQEDSISSGMLLKMMGMTILDIVKLKKKGSDIGSAAVAFASTLLSELLSFISNYMKQA--------YPALDSEKGKDQFSKMRNRIIMSQR------------KRRRRRKFSSQSSDHSNSDDEHLIFKQDEDLSDLSEGELDQDFSDTLSEDSDSVIEET-------SDAENDLE---------VERIVLERGARPP--------------INGKISKSERENLSSLSKAGLLLNKQLKKENNKMHLN-SLSNGIVHDFTLEHVDFINQAACLLEDFEK----------------------------------INNEAFLPVVKVLFDWLRINPDILKTSGKAAPVLWQRIADVLNILPSQKVVHTTVMYFSQRRRLPLWLRGDLEDGVE---KPQKRALPEDITFYGAPGFEDLHKSLDIKWFRGLTNSELYQFALRVTYLRNFGHFISNNTDVPCFSWDEKTDRFMVDTEQLPQPPAVTTNHQHMNGHADHTHSNGNSITTTPAAPPHPRKTLEQRNEMMKALAKQKLKHEVSEMQMKLKTEEH----SVYLVLDTPALCRHLSLLRTLVKSSNFVVIVPIQVIAALDELKKYNPGARDAIKFLEDEIKHGNRWLKTQKEHETITDALNSKKKKNRDVEEWRFIQVVKCCIYFAEKHQENSSPTPIDHTSSNMVTLLTS----DSSIMTSPPGNSTKMANLGTRVSQYALDICKTKGIRVEPVVDFYKRW 932
            ++R++C  ++     D  RK EE LWRK +Y++I  +K +KK + + S L   Y +HL   +GFY +LL+ +++ Y + LQ  IDW  +  D  I  K     +  +++WA  AC RCL+YLGD++RYQ +++       AER+Y+ A+ + P +GMP NQ+GTL  S+    E+ Y Y+RC+ +   FEGA  N+KR+ +K     H +   E +          D K +    F+ LQ +L       + EL   CQSV+  F+L L     +  SP   + +           +E+ES      D     ++ +M+ + ++ +  L++ GS   SAA+AF   L S L++ + N   QA         PA  S+ G D+           +             + R+ RKFS  S          +    D DLS+  E +   D S   SE SDS  +++        DAE D E         +E +  E G R P              +NG +  SE    S+L      ++ Q+ +      L  + SN ++   T  H    +   C+  D +K                                  +  E  LP VKV  DWLR NPD++    +++  LW R++ +LN+LP+   +  + +      +       DL +G E    P    LPED+     P     H+  +    R L  S L +  +R+  +R+FGHFI+                            ++   +  +        S   S+     A     +   +RN +M+ +A+ +L+ EVS+++  L+  +     S YLV DT ALC HL ++R L  S  F+VI+P  VI  LD LKK +PGARD I++LE E K GNR+++ QKE   +  +    K K +D + W   +++  C       Q   +    +   S MVT++T     + S+++ P      M       +  ++DI        + V+DFYK+W
Sbjct:   58 KLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVT-DPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPGKKRCKDIK-RLLVNFMYLQSLLQPKSSSVDSELTSLCQSVLEDFNLCL---FYLPSSPNLSLAS--------EDEEEYESGYAFLPDL----LIFQMVIICLMCVHSLERAGSKQYSAAIAFTLALFSHLVNHV-NIRLQAELEEGENPVPAFQSD-GTDEPESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKV--GDDSDLSEGFESDSSHD-SARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEEEEGTRSPTLEPPRGRSEAPDSLNGPLGPSEASIASNLQA----MSTQMFQTKRCFRLAPTFSNLLLQPTTNPHTS-ASHRPCVNGDVDKPSEPASEEGSESEGSESSGRSCRNERSIQEKLQVLMAEGLLPAVKVFLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQ-------DLLEGCELPDLPSSLLLPEDMALRNLPPLRAAHRRFNFDTDRPLL-STLEESVVRICCIRSFGHFIARLQG------------------------SILQFNPEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKE---VGKSFERHKLKRQDADAWTLYKILDSC------KQLTLAQGAGEEDPSGMVTIITGLPLDNPSVLSGP------MQAALQAAAHASVDI--------KNVLDFYKQW 1012

The following BLAST results are available for this feature:

BLAST of TCONS_00012204-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012204-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMG5	1.733e-89	27.00	Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3	[more]

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TCONS_00012204-protein (polypeptide) - C. hemisphaerica