TCONS_00011874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011874
Unique NameTCONS_00011874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011874 ID=TCONS_00011874|Name=TCONS_00011874|organism=Clytia hemisphaerica|type=transcript|length=2898bp
GTTTAGAGATACTTTCTTTCAGGATCAGTCACTGGAGTTGGACTTGGAGT
TGGTGGTGTATGTGCTGAAACCTCATTTCATAATTCTCGGTGCACAGGAT
ACGTAGAGAACCAAGATTTTAGTTTTGGGTCAACGACTCGTGAAGATTTG
CTCCTGGAAAGATATATTTCAATCATCTAGTAAAAGAACCAGAGGAGTGT
AAAAGAAGAacgtttaaaaacaaaaacaaacgagGACACACGTCAGCCAA
TCAGATGCTCTTATCTCCACCAAATAACCAATCACAATCAGTCAGAGGGT
TGACGAAAAACCCAAAGCGATCATAAAAGATGAAAGTCAAGATATTATAC
ATCGTGTTGGCGACTTTTGTTGTCATTTATGTATTAACGTTGACGGCTAT
GTTGAAGAGAAATGATATCGAGATTTTGTTGAGCAGTCGGAGATTGGTTT
TATCGGATCCAAAGTTGCATGAGGAGGATTTACGACATTTAGAGATTTTG
CAGGAACTCAATGAAGTTGAAAAGAAGATTGCCAAAGAAGATGGTAATAT
AATTGATGACCAACAACCACAAGAAGTGGTTGTAGCGCCGCTTCTAAAAG
GAGAATTACGCCTCAATAACCAAGGTGGTATTGAAATACGCGGCGAAAAA
CCAGAACCTAAGACTTGTAAAGCTGAACGGAATGTCGTGTTCTTGAAGAC
TCACAAGACAGGCTCAAGCACTGTGATTAATGTCTTTCAACGATATAGCG
ATCACCATAACCTTGAGATGGTTTTACCAAAATTACCGACTCATTTATTT
AAATGGCCTAATAAGTTTAATCATAGTTTTGTGTTTGAATATAAAGATGG
TGATAGATTCAATCTCTTAGCCAATCATGCTCGTTTTCATAAAGAAAACA
TGGCAGCAATGATGACTCGACCCAGTCTTACTAAATTCGTTACCATTCTC
CGTGAGCCGTTGTTTCAATTAGAGTCTATGTTCtcttattttaaatttca
taaaCCGTTGAAAACAAGCGAGGAAAATGGATTATGGGAGTTTTTTAGTA
CAACTGAATCTGACCGGACACAACTTGTccgaaatttaaaaacaatgaaa
gcTGGGGTCGTTAAACATTTATTGAAAAATCCAAGTACTTTTGATCTTGG
CTTTGATCAATGGTCTGAGTATCCTGCCAATGTGAGTCACGTGATTAAAA
CAATGGATCAAGATTTTAGTCTTGTTATGATATCTGAATACATGTTAGAA
TCGATGGTTTTGTTGAAAGACGAACTATGTTGGGACTTACAGGATGTTGT
CTATTTTACGTTGAATAAACGACCGAATAAATTTCGCAAAGATGTCGGAC
CTAAACGTGAGACCGTGCGACATTGGAGTCGAATCGATTATGCGATGTAC
GATCACTTTAATCGAACATTTTGGCGTAAGATTGAACAAAAAGGTGAAAG
TTTCCAgcgagatttagaaaaattgaaagataTGATTCAAGATTTGGAAG
AAAAATGTTTGGATAAAGGAGACCATGTTGATGAAACACAATCTTGGTTT
GAAATTGAAGGATACAAGATTCGAGAAGAAGCACGCGGTACTGATTATTA
TGAACTTTGTAAGAGGTTGACGAGATCAGAGATCGATTATACCATGATTC
TTGGTGAGAAACAGAGTAGGGATGGTTTCAAAATGCACGGGAAAACAAGA
GAACGTTATGAATCATAAGGAAATTCAGCCGATAGACATCAATTATTGAG
TGTCGtgtttttttagatttatgggAATCATAGGATAACGGATgcgaaaa
aatgaaacaaatattTCATGCGAAGAAGTTTTATTGGAGAAACAGAGAAG
GGATGGTTTCAAAATGCACGGGAAAACAAGAAAACGCTATGAATCACAAG
GAAATTCAATCAATATACATCAAATGTCGAACGCTTTATCAATGATTAAA
ATTGTCGAATAAGGGATTTCATTCGAAGAgcttttcttgattttatttag
aattattgggcttttccataaaattttcaatacgGGGGTTGGAGGATAac
gtttttttggaaatttactaCCGGACATAGTGaattttgacccccccccc
ggacaacggaTTTTACCatccggacaagcatcagttgacccacCGGACAT
TCGCAAAATTACCTATCAATAGAGCAAATTTGCGCCCAAAACAAGGCAAA
ATTTCGCTACCCCCACCCACCGGATAAAATATccaatcctccacccccca
tgtacaaaaattttctgaaagagCTCATTGTATGTAAGTTTTTctagttt
ttcttttgttagatCTTAAATTTTACAAGATTTAAGTCCGATTTATCAAT
TCTCTGGGATACAGAACCCTCTGGGGATGTTTAAATATCTCAGACACTGG
AATTATTTAACTcataaaaattggaaaaatcggAACCTTCTttctgaaaa
ataattaattaccgagaaaaaaaacaaccgcAAAATAATTGAgaactaaa
ataaataaaactgttaacaaaatattattatcaaaactaattattttaat
caaaattcgTAGAAATGTATATAAATTTAAGTGAACGGAAAAAATAATCA
ttaaaaattgtgttttttacTTGTATTATTTACAAACAATCCCACCCAAG
ACCCACTTCACAAAACTTCACAAGGGAAAAATTCCAAGTAGACTTTTCGG
ACCTACCTTTAGGTTCCTAGTAAATACCTCCCCGTTGGTtaactttatga
ttttttttccaatcccACGGAACTTATTAGGACACTCCTGtttaatgatt
tttgaaaatattttcagaattctAAAGAAAAGCCCCTTATTTTGCCCTAA
ATGGGTTTAGTCTATAAGGAAATTTATTTTGGGGTACTTAGAGATACA
Run BLAST on NCBI

protein sequence of TCONS_00011874-protein

>TCONS_00011874-protein ID=TCONS_00011874-protein|Name=TCONS_00011874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MKVKILYIVLATFVVIYVLTLTAMLKRNDIEILLSSRRLVLSDPKLHEED
LRHLEILQELNEVEKKIAKEDGNIIDDQQPQEVVVAPLLKGELRLNNQGG
IEIRGEKPEPKTCKAERNVVFLKTHKTGSSTVINVFQRYSDHHNLEMVLP
KLPTHLFKWPNKFNHSFVFEYKDGDRFNLLANHARFHKENMAAMMTRPSL
TKFVTILREPLFQLESMFSYFKFHKPLKTSEENGLWEFFSTTESDRTQLV
RNLKTMKAGVVKHLLKNPSTFDLGFDQWSEYPANVSHVIKTMDQDFSLVM
ISEYMLESMVLLKDELCWDLQDVVYFTLNKRPNKFRKDVGPKRETVRHWS
RIDYAMYDHFNRTFWRKIEQKGESFQRDLEKLKDMIQDLEEKCLDKGDHV
DETQSWFEIEGYKIREEARGTDYYELCKRLTRSEIDYTMILGEKQSRDGF
KMHGKTRERYES
Run BLAST on NCBI

transcript from alignment at sc0000133:342102..346289-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011874 ID=TCONS_00011874|Name=TCONS_00011874|organism=Clytia hemisphaerica|type=transcript|length=4188bp|location=Sequence derived from alignment at sc0000133:342102..346289- (Clytia hemisphaerica)
GTTTAGAGATACTTTCTTTCAGGATCAGTCACTGGAGTTGGACTTGGAGT
TGGTGGTGTATGTGCTGAAACCTCATTTCATAATTCTCGGTGCACAGGAT
ACGTAGAGAACCAAGATTTTAGTTTTGGGTCAACGACTCGTGAAGGTATA
AAATTGTTTACAAAAGAAAAGTCTCCGGCATCACTTTGGCTAGTGAAAAA
AAGGTGTCCCGTTAAACAAAGATTTGAACCTTTTTGTTATTTTAAGATCA
CGCTCAAGTTTGAATAGGTTTTTTTCTATTCCAAAAGTTTTGAACTCATA
GTGGACCTCCATTGCGCCGCTCATTGTATTATTCGACTAGCATTTATGTT
GACCACATCAAGTCTCTAGAACATTGAACGAATTTTTCATTAAATGTTCT
ATAGACTTGATTGTGTCAGCATGTTATCTGTCCGTTATTTTGGTGGCCAT
TTTCATAATAAAATTCCGGTCAATCACTGATAATTGGCATTTTAAGGTTG
ATACACATTTTATACGCCATGTACATTCCCTTTTCGAGTTTGCTTGTCCG
GAAATTATTCTTAAATTATTCTCCATCTTTAATTTCTCCGGATCTTATTA
CTAGCTATATTATCGCAAAAATTAATCTCCTTGCTTTGAAAAAGGGAAAC
AGGTATTCATAAAAATTACCATTTCAAAGGATAGGAAATTTCCGATTAGG
CTCAGAAAATAATAACACGGCTTAACATTTTTAACTTGCATGTTTCGAAT
TTGGTGTAGTTTTGAATCATTTCATTTCTATGAATAGACGAGTCGAGTTT
GTTGTTTAATGGTATGGATTCAAAGGGAGGGATCAGTTTTGCTAGCTCTC
GGGTGTACCATATGTGAACCCGTCATCAAGTTTATCTGAGAGAGTTAAAG
CATGCATATTATACTGCATAAAGAAGCAGAATATCTAGAGCATAACCCTT
GCTGGCGAAAATAAACTATCGTACAAACAAGAGACAACTTATTTGATATT
TTCGCTTTCAGATTTGCTCCTGGAAAGATATATTTCAATCATCTAGTAAA
AGAACCAGAGGAGTGTAAAAGAAGAACGTTTAAAAACAAAAACAAACGAG
GACACACGTCAGCCAATCAGATGCTCTTATCTCCACCAAATAACCAATCA
CAATCAGTCAGAGGGTTGACGAAAAACCCAAAGCGATCATAAAAGATGAA
AGTCAAGATATTATACATCGTGTTGGCGACTTTTGTTGTCATTTATGTAT
TAACGTTGACGGCTATGTTGAAGAGAAATGATATCGAGATTTTGTTGAGC
AGTCGGAGATTGGTTTTATCGTAAGTTTTTCACCATTTTGACCGAGTCGA
TATCTAAGATAGATACCCCAGTAAAAACTAGGACTTTTAAACAGTCTTTT
GAATGTTTTCACGGGGTTACTTACTACTAGCCGAAGCGGTTATCCTTGAA
CTGAACAGAACATTGAAGCAAGCAGGGGTTCGAACTTGACTTTTGATTTC
AGACGATGATGACACCATTGATCCTTATTCGACTTGATATGTAGAGGGAG
GGGTTTCAGAGGCTTTATAACAATAAATCTATCTTTTTCAAAAGCTTAAA
TTTCATTTCTGGCTCTGATGATGCTTATAAGCGTCATACAAGTTTTATGG
TTAGAGCGGTCAAGCAGTAGGAACCTTTGTGGTGAGTGCTAAAGAGCTGT
AAAGGATCTATACTGAACAATCATCATTGCTTTCTTTATCACAGGGATCC
AAAGTTGCATGAGGAGGATTTACGACATTTAGAGATTTTGCAGGAACTCA
ATGAAGTTGAAAAGAAGATTGCCAAAGAAGATGGTAATATAATTGATGAC
CAACAACCACAAGAAGTGGTTGTAGCGCCGCTTCTAAAAGGAGAATTACG
CCTCAATAACCAAGGTGGTATTGAAATACGCGGCGAAAAACCAGAACCTA
AGACTTGTAAAGCTGAACGGAATGTCGTGTTCTTGAAGACTCACAAGACA
GGCTCAAGCACTGTGATTAATGTCTTTCAACGATATAGCGATCACCATAA
CCTTGAGATGGTTTTACCAAAATTACCGACTCATTTATTTAAATGGCCTA
ATAAGTTTAATCATAGTTTTGTGTTTGAATATAAAGATGGTGATAGATTC
AATCTCTTAGCCAATCATGCTCGTTTTCATAAAGAAAACATGGCAGCAAT
GATGACTCGACCCAGTCTTACTAAATTCGTTACCATTCTCCGTGAGCCGT
TGTTTCAATTAGAGTCTATGTTCTCTTATTTTAAATTTCATAAACCGTTG
AAAACAAGCGAGGAAAATGGATTATGGGAGTTTTTTAGTACAACTGAATC
TGACCGGACACAACTTGTCCGAAATTTAAAAACAATGAAAGCTGGGGTCG
TTAAACATTTATTGAAAAATCCAAGTACTTTTGATCTTGGCTTTGATCAA
TGGTCTGAGTATCCTGCCAATGTGAGTCACGTGATTAAAACAATGGATCA
AGATTTTAGTCTTGTTATGATATCTGAATACATGTTAGAATCGATGGTTT
TGTTGAAAGACGAACTATGTTGGGACTTACAGGATGTTGTCTATTTTACG
TTGAATAAACGACCGAATAAATTTCGCAAAGATGTCGGACCTAAACGTGA
GACCGTGCGACATTGGAGTCGAATCGATTATGCGATGTACGATCACTTTA
ATCGAACATTTTGGCGTAAGATTGAACAAAAAGGTGAAAGTTTCCAGCGA
GATTTAGAAAAATTGAAAGATATGATTCAAGATTTGGAAGAAAAATGTTT
GGATAAAGGAGACCATGTTGATGAAACACAATCTTGGTTTGAAATTGAAG
GATACAAGATTCGAGAAGAAGCACGCGGTACTGATTATTATGAACTTTGT
AAGAGGTTGACGAGATCAGAGATCGATTATACCATGATTCTTGGTGAGAA
ACAGAGTAGGGATGGTTTCAAAATGCACGGGAAAACAAGAGAACGTTATG
AATCATAAGGAAATTCAGCCGATAGACATCAATTATTGAGTGTCGTGTTT
TTTTAGATTTATGGGAATCATAGGATAACGGATGCGAAAAAATGAAACAA
ATATTTCATGCGAAGAAGTTTTATTGGAGAAACAGAGAAGGGATGGTTTC
AAAATGCACGGGAAAACAAGAAAACGCTATGAATCACAAGGAAATTCAAT
CAATATACATCAAATGTCGAACGCTTTATCAATGATTAAAATTGTCGAAT
AAGGGATTTCATTCGAAGAGCTTTTCTTGATTTTATTTAGAATTATTGGG
CTTTTCCATAAAATTTTCAATACGGGGGTTGGAGGATAACGTTTTTTTGG
AAATTTACTACCGGACATAGTGAATTTTGACCCCCCCCCCGGACAACGGA
TTTTACCATCCGGACAAGCATCAGTTGACCCACCGGACATTCGCAAAATT
ACCTATCAATAGAGCAAATTTGCGCCCAAAACAAGGCAAAATTTCGCTAC
CCCCACCCACCGGATAAAATATCCAATCCTCCACCCCCCATGTACAAAAA
TTTTCTGAAAGAGCTCATTGTATGTAAGTTTTTCTAGTTTTTCTTTTGTT
AGATCTTAAATTTTACAAGATTTAAGTCCGATTTATCAATTCTCTGGGAT
ACAGAACCCTCTGGGGATGTTTAAATATCTCAGACACTGGAATTATTTAA
CTCATAAAAATTGGAAAAATCGGAACCTTCTTTCTGAAAAATAATTAATT
ACCGAGAAAAAAAACAACCGCAAAATAATTGAGAACTAAAATAAATAAAA
CTGTTAACAAAATATTATTATCAAAACTAATTATTTTAATCAAAATTCGT
AGAAATGTATATAAATTTAAGTGAACGGAAAAAATAATCATTAAAAATTG
TGTTTTTTACTTGTATTATTTACAAACAATCCCACCCAAGACCCACTTCA
CAAAACTTCACAAGGGAAAAATTCCAAGTAGACTTTTCGGACCTACCTTT
AGGTTCCTAGTAAATACCTCCCCGTTGGTTAACTTTATGATTTTTTTTCC
AATCCCACGGAACTTATTAGGACACTCCTGTTTAATGATTTTTGAAAATA
TTTTCAGAATTCTAAAGAAAAGCCCCTTATTTTGCCCTAAATGGGTTTAG
TCTATAAGGAAATTTATTTTGGGGTACTTAGAGATACA

Coding sequence (CDS) from alignment at sc0000133:342102..346289-

>TCONS_00011874 ID=TCONS_00011874|Name=TCONS_00011874|organism=Clytia hemisphaerica|type=CDS|length=2778bp|location=Sequence derived from alignment at sc0000133:342102..346289- (Clytia hemisphaerica)
GGATCCAAAGTTGCATGAGGAGGATTTACGACATTTAGAGATTTTGCAGG
AACTCAATGAAGTTGAAAAGAAGATTGCCAAAGAAGATGGTAATATAATT
GATGACCAACAACCACAAGAAGTGGTTGTAGCGCCGCTTCTAAAAGGAGA
ATTACGCCTCAATAACCAAGGTGGTATTGAAATACGCGGCGAAAAACCAG
AACCTAAGACTTGTAAAGCTGAACGGAATGTCGTGTTCTTGAAGACTCAC
AAGACAGGCTCAAGCACTGTGATTAATGTCTTTCAACGATATAGCGATCA
CCATAACCTTGAGATGGTTTTACCAAAATTACCGACTCATTTATTTAAAT
GGCCTAATAAGTTTAATCATAGTTTTGTGTTTGAATATAAAGATGGTGAT
AGATTCAATCTCTTAGCCAATCATGCTCGTTTTCATAAAGAAAACATGGC
AGCAATGATGACTCGACCCAGTCTTACTAAATTCGTTACCATTCTCCGTG
AGCCGTTGTTTCAATTAGAGTCTATGTTCTCTTATTTTAAATTTCATAAA
CCGTTGAAAACAAGCGAGGAAAATGGATTATGGGAGTTTTTTAGTACAAC
TGAATCTGACCGGACACAACTTGTCCGAAATTTAAAAACAATGAAAGCTG
GGGTCGTTAAACATTTATTGAAAAATCCAAGTACTTTTGATCTTGGCTTT
GATCAATGGTCTGAGTATCCTGCCAATGTGAGTCACGTGATTAAAACAAT
GGATCAAGATTTTAGTCTTGTTATGATATCTGAATACATGTTAGAATCGA
TGGTTTTGTTGAAAGACGAACTATGTTGGGACTTACAGGATGTTGTCTAT
TTTACGTTGAATAAACGACCGAATAAATTTCGCAAAGATGTCGGACCTAA
ACGTGAGACCGTGCGACATTGGAGTCGAATCGATTATGCGATGTACGATC
ACTTTAATCGAACATTTTGGCGTAAGATTGAACAAAAAGGTGAAAGTTTC
CAGCGAGATTTAGAAAAATTGAAAGATATGATTCAAGATTTGGAAGAAAA
ATGTTTGGATAAAGGAGACCATGTTGATGAAACACAATCTTGGTTTGAAA
TTGAAGGATACAAGATTCGAGAAGAAGCACGCGGTACTGATTATTATGAA
CTTTGTAAGAGGTTGACGAGATCAGAGATCGATTATACCATGATTCTTGG
TGAGAAACAGAGTAGGGATGGTTTCAAAATGCACGGGAAAACAAGAGAAC
GTTATGAATCATAAATGAAAGTCAAGATATTATACATCGTGTTGGCGACT
TTTGTTGTCATTTATGTATTAACGTTGACGGCTATGTTGAAGAGAAATGA
TATCGAGATTTTGTTGAGCAGTCGGAGATTGGTTTTATCGGATCCAAAGT
TGCATGAGGAGGATTTACGACATTTAGAGATTTTGCAGGAACTCAATGAA
GTTGAAAAGAAGATTGCCAAAGAAGATGGTAATATAATTGATGACCAACA
ACCACAAGAAGTGGTTGTAGCGCCGCTTCTAAAAGGAGAATTACGCCTCA
ATAACCAAGGTGGTATTGAAATACGCGGCGAAAAACCAGAACCTAAGACT
TGTAAAGCTGAACGGAATGTCGTGTTCTTGAAGACTCACAAGACAGGCTC
AAGCACTGTGATTAATGTCTTTCAACGATATAGCGATCACCATAACCTTG
AGATGGTTTTACCAAAATTACCGACTCATTTATTTAAATGGCCTAATAAG
TTTAATCATAGTTTTGTGTTTGAATATAAAGATGGTGATAGATTCAATCT
CTTAGCCAATCATGCTCGTTTTCATAAAGAAAACATGGCAGCAATGATGA
CTCGACCCAGTCTTACTAAATTCGTTACCATTCTCCGTGAGCCGTTGTTT
CAATTAGAGTCTATGTTCTCTTATTTTAAATTTCATAAACCGTTGAAAAC
AAGCGAGGAAAATGGATTATGGGAGTTTTTTAGTACAACTGAATCTGACC
GGACACAACTTGTCCGAAATTTAAAAACAATGAAAGCTGGGGTCGTTAAA
CATTTATTGAAAAATCCAAGTACTTTTGATCTTGGCTTTGATCAATGGTC
TGAGTATCCTGCCAATGTGAGTCACGTGATTAAAACAATGGATCAAGATT
TTAGTCTTGTTATGATATCTGAATACATGTTAGAATCGATGGTTTTGTTG
AAAGACGAACTATGTTGGGACTTACAGGATGTTGTCTATTTTACGTTGAA
TAAACGACCGAATAAATTTCGCAAAGATGTCGGACCTAAACGTGAGACCG
TGCGACATTGGAGTCGAATCGATTATGCGATGTACGATCACTTTAATCGA
ACATTTTGGCGTAAGATTGAACAAAAAGGTGAAAGTTTCCAGCGAGATTT
AGAAAAATTGAAAGATATGATTCAAGATTTGGAAGAAAAATGTTTGGATA
AAGGAGACCATGTTGATGAAACACAATCTTGGTTTGAAATTGAAGGATAC
AAGATTCGAGAAGAAGCACGCGGTACTGATTATTATGAACTTTGTAAGAG
GTTGACGAGATCAGAGATCGATTATACCATGATTCTTGGTGAGAAACAGA
GTAGGGATGGTTTCAAAATGCACGGGAAAACAAGAGAACGTTATGAATCA
TAAATGAAAGTCAAGATATTATACATCGTGTTGGCGACTTTTGTTGTCAT
TTATGTATTAACGTTGACGGCTATGTTGAAGAGAAATGATATCGAGATTT
TGTTGAGCAGTCGGAGATTGGTTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006664XLOC_006664Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011874-proteinTCONS_00011874-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011874-exon-sc0000133-1575043694:346145..346289TCONS_00011874-exon-sc0000133-1575043694:346145..346289Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1575043694:344970..345278TCONS_00011874-exon-sc0000133-1575043694:344970..345278Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1575043694:342102..344545TCONS_00011874-exon-sc0000133-1575043694:342102..344545Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1510915933:346145..346289TCONS_00011874-exon-sc0000133-1510915933:346145..346289Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1510915933:344970..345278TCONS_00011874-exon-sc0000133-1510915933:344970..345278Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1510915933:342102..344545TCONS_00011874-exon-sc0000133-1510915933:342102..344545Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1491911889:346145..346289TCONS_00011874-exon-sc0000133-1491911889:346145..346289Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1491911889:344970..345278TCONS_00011874-exon-sc0000133-1491911889:344970..345278Clytia hemisphaericaexon
TCONS_00011874-exon-sc0000133-1491911889:342102..344545TCONS_00011874-exon-sc0000133-1491911889:342102..344545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:342102..346289 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0148297	0.0537124	0	0.312348	0.758899	0	1.06474	0.0845555	0.154024	0.0912835	0.655129	0.0500422	0.0425338	0	0.0152066	0.0132905	0.0204368	0	0	0.0149069	0	0.0195003	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009729Gal-3-0_sulfotransfrase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0009247glycolipid biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0001733galactosylceramide sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009247 glycolipid biosynthetic process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0001733 galactosylceramide sulfotransferase activity
Blast
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BLAST of TCONS_00011874 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.026e-51
Identity = 125/348 (35.92%), Postives = 182/348 (52.30%), Query Frame = 3 
Query:  666 CKAERNVVFLKTHKTGSSTVINVFQRYSDHHNLEMVLPKLPTHLFKWPNKFNHSFVFEYKDGDRFNLLANHARFHKENMAAMMTRPSLTKFVTILREPLFQLESMFSYFKFHKPL--KTSEENGLWEFFSTTESDRTQLVRNLKTMKAGVVKHLLKNPSTFDLGFDQWSEYPAN--VSHVIKTMDQDFSLVMISEYMLESMVLLKDELCWDLQDVVYFTLN-KRPNKFRKDVGPKRETVRHWSRIDYAMYDHFNRTFWRKIEQKG-ESFQRDLEKLKDMIQDLEEKCLDKGDHVDET-------QSWF-----EIEGYKIREEARGTDYYELCKRLTRSEIDYTMILG 1655
            C+  RN+VFLKTHKT SST++N+  R+   H L+   P    + F +P  F  S V +Y+ G  FN++ NH RFH + +  ++  P+   F+T+LR+P    ES F YF    PL  K S  + L EF    + DR            G   H L+N   FDLG+D  S  P++  V   I  +++ F LV++ EY  ES+VLLKD LCW+L+DV+YF LN +R +   +  G        W+ +D  +Y HFN +FWRK+E  G E   R++  L+   + +   C+D G  VD         Q W       I GY +++   G  + +LC+R+   EI Y M LG
Sbjct:   72 CQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPN-GRNDFDYPTFFARSLVQDYRPGACFNIICNHMRFHYDEVRGLV--PTNAIFITVLRDPARLFESSFHYFGPVVPLTWKLSAGDKLTEFLQ--DPDRYY-------DPNGFNAHYLRNLLFFDLGYDN-SLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAVDAAAIQDEAMQPWQPLGTKSILGYNLKKSI-GQRHAQLCRRMLTPEIQYLMDLG 405
The following BLAST results are available for this feature:
BLAST of TCONS_00011874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G3ST12.026e-5135.92Galactosylceramide sulfotransferase OS=Homo sapien... [more]
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