TCONS_00011874-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011874-protein
Unique Name	TCONS_00011874-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	462

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011874-protein ID=TCONS_00011874-protein|Name=TCONS_00011874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MKVKILYIVLATFVVIYVLTLTAMLKRNDIEILLSSRRLVLSDPKLHEED
LRHLEILQELNEVEKKIAKEDGNIIDDQQPQEVVVAPLLKGELRLNNQGG
IEIRGEKPEPKTCKAERNVVFLKTHKTGSSTVINVFQRYSDHHNLEMVLP
KLPTHLFKWPNKFNHSFVFEYKDGDRFNLLANHARFHKENMAAMMTRPSL
TKFVTILREPLFQLESMFSYFKFHKPLKTSEENGLWEFFSTTESDRTQLV
RNLKTMKAGVVKHLLKNPSTFDLGFDQWSEYPANVSHVIKTMDQDFSLVM
ISEYMLESMVLLKDELCWDLQDVVYFTLNKRPNKFRKDVGPKRETVRHWS
RIDYAMYDHFNRTFWRKIEQKGESFQRDLEKLKDMIQDLEEKCLDKGDHV
DETQSWFEIEGYKIREEARGTDYYELCKRLTRSEIDYTMILGEKQSRDGF
KMHGKTRERYES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006664	XLOC_006664	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011874	TCONS_00011874	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009729	Gal-3-0_sulfotransfrase
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0009247	glycolipid biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005794	Golgi apparatus
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0001733	galactosylceramide sulfotransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009247	glycolipid biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0001733	galactosylceramide sulfotransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 372..399
None	No IPR available	GENE3D	3.40.50.300		coord: 104..408 e-value: 1.2E-7 score: 31.0
IPR009729	Galactose-3-O-sulfotransferase	PFAM	PF06990	Gal-3-0_sulfotr	coord: 106..445 e-value: 2.8E-72 score: 243.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 113..222 coord: 261..293

Blast

[Close]

BLAST of TCONS_00011874-protein vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.830e-55
Identity = 131/387 (33.85%), Postives = 190/387 (49.10%), Query Frame = 0

Query:   84 VVAPLLKGELRLNNQGGIEIRGEKPEPKT----------CKAERNVVFLKTHKTGSSTVINVFQRYSDHHNLEMVLPKLPTHLFKWPNKFNHSFVFEYKDGDRFNLLANHARFHKENMAAMMTRPSLTKFVTILREPLFQLESMFSYFKFHKPL--KTSEENGLWEFFSTTESDRTQLVRNLKTMKAGVVKHLLKNPSTFDLGFDQWSEYPAN--VSHVIKTMDQDFSLVMISEYMLESMVLLKDELCWDLQDVVYFTLN-KRPNKFRKDVGPKRETVRHWSRIDYAMYDHFNRTFWRKIEQKG-ESFQRDLEKLKDMIQDLEEKCLDKGDHVDET-------QSWF-----EIEGYKIREEARGTDYYELCKRLTRSEIDYTMILG 442
             V PL  G      +          EP+           C+  RN+VFLKTHKT SST++N+  R+   H L+   P    + F +P  F  S V +Y+ G  FN++ NH RFH + +  ++  P+   F+T+LR+P    ES F YF    PL  K S  + L EF    + DR            G   H L+N   FDLG+D  S  P++  V   I  +++ F LV++ EY  ES+VLLKD LCW+L+DV+YF LN +R +   +  G        W+ +D  +Y HFN +FWRK+E  G E   R++  L+   + +   C+D G  VD         Q W       I GY +++   G  + +LC+R+   EI Y M LG
Sbjct:   33 AVPPLHAGLASTTPEAAASCSPPALEPEAVIRANGSAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPN-GRNDFDYPTFFARSLVQDYRPGACFNIICNHMRFHYDEVRGLV--PTNAIFITVLRDPARLFESSFHYFGPVVPLTWKLSAGDKLTEFLQ--DPDRYY-------DPNGFNAHYLRNLLFFDLGYDN-SLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAVDAAAIQDEAMQPWQPLGTKSILGYNLKKSI-GQRHAQLCRRMLTPEIQYLMDLG 405

The following BLAST results are available for this feature:

BLAST of TCONS_00011874-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011874-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G3ST1	7.830e-55	33.85	Galactosylceramide sulfotransferase OS=Homo sapien...	[more]

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TCONS_00011874-protein (polypeptide) - C. hemisphaerica