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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011794 ID=TCONS_00011794|Name=TCONS_00011794|organism=Clytia hemisphaerica|type=transcript|length=2042bpRun BLAST on NCBI protein sequence of TCONS_00011794-protein >TCONS_00011794-protein ID=TCONS_00011794-protein|Name=TCONS_00011794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp MRPGEAAIKQEYLVMLDEQPKQKEPPAQKESEVPEENHGKENESESASTERun BLAST on NCBI transcript from alignment at sc0000132:398086..413564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011794 ID=TCONS_00011794|Name=TCONS_00011794|organism=Clytia hemisphaerica|type=transcript|length=15479bp|location=Sequence derived from alignment at sc0000132:398086..413564- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:398086..413564- >TCONS_00011794 ID=TCONS_00011794|Name=TCONS_00011794|organism=Clytia hemisphaerica|type=CDS|length=28080bp|location=Sequence derived from alignment at sc0000132:398086..413564- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011794 vs. Swiss-Prot (Human)
Match: DUS3L (tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS3L PE=1 SV=2) HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 305/566 (53.89%), Postives = 409/566 (72.26%), Query Frame = 3
Query: 258 GQNKARPRTVPKVASEFRICPNV--HRGTVCQYGDKCKFMHDVREYMEKKPKDIGEECINFQLTGKCKYGVECRYAKSHLTENYENIVVEEKYKEYLENYSEKDQNVLTRDLMNILRKKKFKYEKTSQYLKKMALVDSRPSRGEDGQQNTKNEMPGVPXXXXXXXXXXXXSKSQNHIPEKVTSQPEEATP--SPATTVGCVTDEDVIKLRQCEKKKVDFKDKLYLAPLTTVGNLPYRRVCKRLGVDITCGEMAMSTNLLQGGQGEWALLRRHPSEDVFGVQICGGYPDSMSKVAELINAECNVDFIDINMGCPIDLVFKKGEGSALMGRLSKLEKVVRGMVEVSDIPITIKMRTGIYENKNTAHKVVPMIKEWGVGAMALHGRTREQRYTKAADWEYINQCAQLSDPIPFFGNGDILSFEDANLHRENTHVSGLMIARGALIKPWIFTEIKEQRHWDISSHERFEILREYTNFGLEHWGSDHKGVENTRRFLLEWLSFLHRYIPVGVLEQPPQKINQRPPAYVGRDDMETMLASRNANDWVKLSEMLLGPVPDNFIFLPKHKANSY 1943
GQNK RP P + R+CP++ C +GD+C+F+HDV Y+E KP D+G C+ F+ G+C YGV CR+A +HL +N+V EE + S + N L + L LRK++ ++E+ Q L++ + P+ + T E G P + +N ++V + P +TP SP T G +TDEDV++LR CEKK++D + KLYLAPLTT GNLP+RR+CKR G D+TCGEMA+ TNLLQG EWALL+RH ED+FGVQ+ G +PD+M+K AEL++ VDF+DIN+GCPIDLV+KKG G ALM R +K +++VRGM +V D+P+T+K+RTG+ E N AH+++P +++WGV + LHGR+REQRYTK ADW+YI +C Q + P+P FGNGDILSFEDAN + T V+G+MIARGAL+KPW+FTEIKEQRHWDISS ER +ILR++TN+GLEHWGSD +GVE TRRFLLEWLSFL RY+PVG+LE+ PQ+IN+RPP Y+GRD +ET++AS+ A DW+++SEMLLGPVP +F FLPKHKAN+Y
Sbjct: 105 GQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPSIR--NGLDKALQQQLRKREVRFERAEQALRRFS---QGPTPAAAVPEGTAAE--GAP-------------RQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAY 649 The following BLAST results are available for this feature:
BLAST of TCONS_00011794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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