TCONS_00011794-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011794-protein
Unique NameTCONS_00011794-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011794-protein ID=TCONS_00011794-protein|Name=TCONS_00011794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MRPGEAAIKQEYLVMLDEQPKQKEPPAQKESEVPEENHGKENESESASTE
PPPPKKQKTKGQNKARPRTVPKVASEFRICPNVHRGTVCQYGDKCKFMHD
VREYMEKKPKDIGEECINFQLTGKCKYGVECRYAKSHLTENYENIVVEEK
YKEYLENYSEKDQNVLTRDLMNILRKKKFKYEKTSQYLKKMALVDSRPSR
GEDGQQNTKNEMPGVPENVLNNNENTTVSKSQNHIPEKVTSQPEEATPSP
ATTVGCVTDEDVIKLRQCEKKKVDFKDKLYLAPLTTVGNLPYRRVCKRLG
VDITCGEMAMSTNLLQGGQGEWALLRRHPSEDVFGVQICGGYPDSMSKVA
ELINAECNVDFIDINMGCPIDLVFKKGEGSALMGRLSKLEKVVRGMVEVS
DIPITIKMRTGIYENKNTAHKVVPMIKEWGVGAMALHGRTREQRYTKAAD
WEYINQCAQLSDPIPFFGNGDILSFEDANLHRENTHVSGLMIARGALIKP
WIFTEIKEQRHWDISSHERFEILREYTNFGLEHWGSDHKGVENTRRFLLE
WLSFLHRYIPVGVLEQPPQKINQRPPAYVGRDDMETMLASRNANDWVKLS
EMLLGPVPDNFIFLPKHKANSYS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006616XLOC_006616Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011794TCONS_00011794Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
IPR018517tRNA_hU_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 76..101
e-value: 0.0067
score: 25.6
coord: 110..137
e-value: 1.3
score: 15.4
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 114..134
e-value: 1.4E-5
score: 24.7
coord: 78..100
e-value: 2.1E-6
score: 27.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 115..140
score: 10.268
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 74..102
score: 12.774
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 75..104
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 281..529
e-value: 1.9E-57
score: 194.6
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 275..511
e-value: 1.3E-43
score: 148.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 39..105
e-value: 3.4E-6
score: 26.2
coord: 106..140
e-value: 6.7E-4
score: 18.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..253
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 278..511
e-value: 4.73078E-107
score: 324.062
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 278..590
IPR018517tRNA-dihydrouridine synthase, conserved sitePROSITEPS01136UPF0034coord: 362..380

Blast
[Close]
BLAST of TCONS_00011794-protein vs. Swiss-Prot (Human)
Match: DUS3L (tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS3L PE=1 SV=2)

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 320/645 (49.61%), Postives = 438/645 (67.91%), Query Frame = 0 
Query:    4 GEAAIKQEYLV-------MLDEQPKQKE-------PPAQKESEVPEENHGKENESESA---STEPPPPKKQ-----KTKGQNKARPRTVPKVASEFRICPNVHRGTV--CQYGDKCKFMHDVREYMEKKPKDIGEECINFQLTGKCKYGVECRYAKSHLTENYENIVVEEKYKEYLENYSEKDQNVLTRDLMNILRKKKFKYEKTSQYLKKMALVDSRPSRGEDGQQNTKNEMPGVPENVLNNNENTTVSKSQNHIPEKVTSQPEEATP--SPATTVGCVTDEDVIKLRQCEKKKVDFKDKLYLAPLTTVGNLPYRRVCKRLGVDITCGEMAMSTNLLQGGQGEWALLRRHPSEDVFGVQICGGYPDSMSKVAELINAECNVDFIDINMGCPIDLVFKKGEGSALMGRLSKLEKVVRGMVEVSDIPITIKMRTGIYENKNTAHKVVPMIKEWGVGAMALHGRTREQRYTKAADWEYINQCAQLSDPIPFFGNGDILSFEDANLHRENTHVSGLMIARGALIKPWIFTEIKEQRHWDISSHERFEILREYTNFGLEHWGSDHKGVENTRRFLLEWLSFLHRYIPVGVLEQPPQKINQRPPAYVGRDDMETMLASRNANDWVKLSEMLLGPVPDNFIFLPKHKANSY 622
            G A IK++YL         L+ + ++K         PA  E   PE    +  + ++A   + E   P +Q     + +GQNK RP   P    + R+CP++ + +   C +GD+C+F+HDV  Y+E KP D+G  C+ F+  G+C YGV CR+A +HL    +N+V EE      +  S +  N L + L   LRK++ ++E+  Q L++ +                      VPE            + +N   ++V + P  +TP  SP  T G +TDEDV++LR CEKK++D + KLYLAPLTT GNLP+RR+CKR G D+TCGEMA+ TNLLQG   EWALL+RH  ED+FGVQ+ G +PD+M+K AEL++    VDF+DIN+GCPIDLV+KKG G ALM R +K +++VRGM +V D+P+T+K+RTG+ E  N AH+++P +++WGV  + LHGR+REQRYTK ADW+YI +C Q + P+P FGNGDILSFEDAN   + T V+G+MIARGAL+KPW+FTEIKEQRHWDISS ER +ILR++TN+GLEHWGSD +GVE TRRFLLEWLSFL RY+PVG+LE+ PQ+IN+RPP Y+GRD +ET++AS+ A DW+++SEMLLGPVP +F FLPKHKAN+Y
Sbjct:   26 GVAPIKRQYLTTKEQFHQFLEAKGQEKTCRETEVGDPAGNELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPSIR--NGLDKALQQQLRKREVRFERAEQALRRFS--------------QGPTPAAAVPEGTAAEG----APRQENCGAQQVPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEMLLGPVPPSFAFLPKHKANAY 649
The following BLAST results are available for this feature:
BLAST of TCONS_00011794-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS3L0.000e+049.61tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like ... [more]
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