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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011658 ID=TCONS_00011658|Name=TCONS_00011658|organism=Clytia hemisphaerica|type=transcript|length=1339bp
CTATGTTTACATCTGGCTTACATTTTTTACTCtcaataatattttgattt
tgaggtCAAAGTCGAGCAGGCGGAGAAACTGAATAAACCAAACTCAACCA
AATGCCAAACTGCCAAACTGAACTGCCAAGTCACCTCACAGCAGGAAGAA
AGtgagaagaaagaagataaTAGTGAGGAGTATAGATTGTTTGGAGGATC
ATTCATCACGGATGGCCAAACCGAGATCAAGCTCACCAGTGAGCTATATT
TCCAGTTCATCTGAGGATGATATTCAGCTCAACGATAAAAACACACCCAC
ACAAGCACAGCAAACATTAAAAAGTCAAATCACCTCAGTAGATCCAATGG
TACTGCCTGAGATCGAAGAGCAAGCGAAAATTGCTAGTAAAAGTATTGAT
AGACTGATGAAGTTTCTTTCTAAGGAACTGACTGAAGGAACGAAAGCTAC
AACTGATATTGTTTCTGTTTATGATGGAACTATAGACCATGTGCATTCAG
AAGTGGAACAAAATATCAAAGCCATGTATGGACTGATTGCTAAGTGTGAA
GAACTTGATCGAAAGATGAAGCCTATAAATGAATTAGCCTCGCAAGTGAG
GAATATACGAGAAACGCTTGACCAATTAGAAAATATATGCAAATGATTCG
GTTTGATTTCATCGTCTTTGGCACTGTTCATGCTTAGTCATCGAGTTTAT
GATTCAAAAGTCTACGTCATCgaaattgtattgaaaaacTTGCCTCagac
tttttgagcttttttagAGAATGAATTCTAATTTCAACAGGGCGAGTCAA
AGATCGTTAAACCAATTGCTAAAGTAGAACTGATCAAATATTATATGCTA
CTCAGGAATCACCCTAACATTAAAAACTTAACATTGGTCAAGCTTCGGAG
ACCATCATGCCCTTGGAATGATTTTGAATTATGAAAGGCGctatttcaat
catttttcaaatctcTAAGATAAAATGATTCTCAGACCTTCACCAATGGC
AATAGGGACTGCTTTAATTATCATTTACAAGGGGGGGGGGCGGAGGTCAT
TGGACATTTTTGATATGGAAAGTATGATATTGTTTAGGCACACAGCTAAC
TGTTTGTTTATAAATGAATTTAGAATATAAATTAATAGAGGatttaaaat
aattattttaaagattttaatttgGCGTTATTCAAGTCAAGAAAATTACT
CGATTGATACATTTTAAATTAGTGAATCTATATTTTCATACCAATCAGCT
GATTGATTCGAGgcttgtaaaatcgctcgaaaAGTAAGAAGGGTGTCCAT
AAAAAAAGGATATAggatttttataaagaaagatTCTCG Run BLAST on NCBI transcript from alignment at sc0000131:346041..353264+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011658 ID=TCONS_00011658|Name=TCONS_00011658|organism=Clytia hemisphaerica|type=transcript|length=7224bp|location=Sequence derived from alignment at sc0000131:346041..353264+ (Clytia hemisphaerica)
CTATGTTTACATCTGGCTTACATTTTTTACTCtcaataatattttgattt
tgaggtCAAAGTCGAGCAGGCGGAGAAACTGAATAAACCAAACTCAACCA
AATGCCAAACTGCCAAACTGAACTGCCAAGTCACCTCACAGCAGGAAGAA
AGtgagaagaaagaagataaTAGTGAGGAGTATAGGTAATAgatcttcaa
atttttcttttatatgcCAAACTTATGTAAAATTTAAACTGTGAGTGTGT
GATAAAACTTTCTCTCTATGCTCTGTCTCTGAAAAAAACTCTTGTCACTT
GTCTATTTCCTCtctttccaatattttaaaCTTCTGTGGATTTGAACTTA
GTTTATTTTagttatagaccttttcgcctttccatccaccatattgaatt
gtatgcaaaaattatggtggccgaattgccgtggtgaaattcatccctta
gaaagtatgcaaaacatatgcaaaaagaaagtattaatataaaacttaca
tgcataattggcattatattaccagacggtgtcaatcgaacaacttcgaa
caaaaatcgcaatcgaaccaatggaacgtaatcgaatgcgatcgaataat
tgcgattcgattgtcgaacgtaatcgaatctcaatcgaacggccgattcc
tgggtaatattcgattgtgttcgattNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TCAGGTTgactttttatgacttctaatggtactttttctaacgagtttga
ttactctgttctcacacttatgtcttttttttttcgcgtccttttccgta
attacttttatttatatttttaaagacaggtaagaaggcatattgatgta
actgatcgaacgtaatcgaatacaatcgaacgtaatcgaagcaatcgaac
atcaaatcctgggtaatattcgacaatcgaattgcaattattcgattgcg
ttcaattgcgttcgtttgattcggcgttcgattcgttcgattgacaccgt
ctggatattaaagtgtaatcttgtagaagaaagattaaatttgcttctct
tgaaaactaaaaataattatattcgctcatctcttagaacgtaagcactt
caaaaatcaataacattagacataacttcaaactgaaaaatcatcaGCGA
AGgtaaaaacaatccttattcggctgacggtaaattattctcctgggaat
agagccgcaaaatgatcaaatcaaaacattgataatctGNgttgactatg
ttcgattggttcgatcgattgtcaattacattggattaatcttcgatttc
gttcgattacgattatgttcgatgagtttgatgattgcgattaaattaaa
ttggatcactctgtcagagcttcttagcgtgggcggccgagcgcttaagt
accatactaaagcgaataaaatctaatacaattgaatcaatcgaacgtaa
tcgaatacaatcgaacgtaatcgaatacaatcgacagttacatcaaaatg
cctcgaaaatgtcaatatgaaaattgcgtaatcagagaacatATGTCTTG
CTCATTATAAAGAGGCCGAGACAANtttttggattaagaaattccatctt
ttattgttctaatgattataatatttatttataagatgctttgttgtctt
tttaatctttgtgtaaacttgtatatgttttgcatactttccaactaaat
ccaaccacaactttttcgttcctctatttttgcatacaattcaagatggc
ggatggaaaggcgaaaaggtctattagacaAGTCATGCAAGTGTGAGGTG
AAATTTGGATGCTGGATGTCTTTTTCCCTTTTCTCAGAATACTCATACTC
AGTGTCCAAGTGTGCTCATCAGTCagtcagtctaaacttaaactcctata
tcaggattagaaactaggctagtcttacctcttttatcttttcctttaca
acaatacaatgctgacaagttgacacaacacatgtgtacatgtattGACA
TTGACCCCTGAGagaagtggtctcttctacttattgcttcccagcgctct
cCTTTGCAgctttttatcaaatttccaccaatgaggttgccgcatttcaa
atGGCCCCTCTTTTTGGCACCagtggcctttcagtgccttgcacgacggg
cagctgtaaaatcccaccctccatatatttgtttcaatccgtgctTAGGT
TTTTTTCTCATATCTttaatttactgaagaaagtggGAATTcaatgcgag
agttagatttgtctacaaagtgccataaaaaatcattgaataaaagaaga
actttaaatcttaaatattttcattttgaagaataaagtgcaaaaaagtg
aaacatagaaaagtttttggaattgcatttccacttaaaacgcgatattt
agagttaaagtctgattttctcaggcttgtagggtcctgaaattttttgg
tgttgaaagcattctggatatactctagGAGAActaaaatggtttgggtt
tgaaatttgcctaagtctgcCAATGTGGTATTGCATTTCCTACTAAAATG
TGATAATTAGAGttttaaagtctaattttctcaggctaaattctcaaaaa
tggtttcaaatagggtcctgaaatcttttgNcaaaatggtttgggtttga
aatttgcctaagtctgcCAATGTGGTATTGCATTTCCTACTAAAACGTGA
TAATTAGAGttttaaagtctaattttctcaggctaaattctcaaaaatgg
tttcaaataaggtcctgaaatcttttggtgttgaaagtattctgggaaca
ctcaaggaaaatcacagtgGTTCACGATGGACCCGGGGGGgaggggggca
ctgggtttgcggactgacggtatgtgcgggccagaaattggcttttaaaa
ttgcacccttacagtgcagcaaaactcagtgaaaatcatacccttagagt
gcattttcccccaaattttcgatccctttctggccaaaaatggtcaaaat
tcggGTCAAAATTCtaagcatttttggtcaaaatatttttcaagaatttt
ctgaaatttctacccttacagtgcatctctagtttttccgaccctttcag
tgcatttgaaacatattggaaaaggtacccttagggcccgcacatacccg
tcggtcctcttgcccagctgccccccggGCAATGGACATATGCCAAAGTC
TGCTAttatgaattttatttctttaggaaGAAAACTCAAGCTTACTCGAA
ACATTGTGtttttagaatgaaatacaattccataatggcagactcgAGTT
TTTCAGAGAATGAGGAATTACCAGCACGATCATATACGATATCTCCATAA
TCTAAGTGTGGTCTATAGGTTTTGTATATAGTGACAAGAGAATCCCTGGG
TAGAAGCTTGCGAAGTCTGCGAATAAGACCAATACCTTGATtagcctttt
ttattttttcatcaaggtgacggtcaaaggccagcttttgatcaagtatg
agaccaagatgtttttgatgatcctGAACTACAATGGCTGCATTATTGAA
CGTAATTTCTGAGGGGTCAGGTGGATTTAGCCTCCTGGTAAAGTACACTT
CAACTGCCTGTTTAAAAGGATCAGGGTTGAAGGACattttccattgatga
gcccactCATCTTCTGCATGTCACATGTCAATGATTTCCAAAACTTCAGA
Taataacagaagaatgaagaaacactataaagattcgaaatcatatggta
aacattcgaaaacaatagaatgtcttcatttctctCAAAATTAAAGAGAG
GGGAAAATGCGCGAAAacttttaccccccccccttcataATTTATTTACC
AAGCATAGGTAGGGTCAAGCATAAGTCGAggctttacttaagcatagtga
gcttcagccgaaatttatcgtatgcttataaaaaaatgagtgtatgATGA
TAGCTTTGCATTGattgagttttattttttattccgAAACTCCATTTAAG
GTAAAAGCCAAAGGATGTATTTTTTTCCAACGCCTACGTGACACCTCCGC
TCACCTTTTCCGTTNTTTAAGGTAAAAGCCAAAGGATGTATTTTTTTCCA
ACGCCTACGTGGCACCTACGCTCACCTTTTCCGTGTGATACTTTTCCTGT
GTGATATTGCTTCAGCCTGACTGGCCTGTTAGTCTAGACCaaaggataat
tttttatcaGGTATTATGATGAGAGCAAAATTATTTGTTTACTGTGTACT
TAAACAGCTAAATTGTTAAAAAGGAGGGAACTTTCTTTGATtaaaatctt
tcttctttccttcTTGGTAGATTGTTTGGAGGATCATTCATCACGGATGG
CCAAACCGAGATCAAGCTCACCAGTGAGCTATATTTCCAGTTCATCTGAG
GATGATATTCAGCTCAACGATAAAAACACACCCACACAAGCACAGCAAAC
ATTAAAAAGTCAAATCACCTCAGTAGATCCAATGGTACTGCCTGAGATCG
AAGAGCAAGCGAAAATTGCTAGTAAAAGTATTGATAGACTGATGAAGTTT
CTTTCTAAGGAACTGACTGAAGGAACGAAAGCTACAACTGATATTGTTTC
TGTTTATGATGGAACTATAGACCATGTGCATTCAGAAGTGGAACAAAATA
TCAAAGCCATGTATGGACTGATTGCTAAGTGTGAAGAACTTGATCGAAAG
ATGAAGCCTATAAATGAATTAGCCTCGCAAGTGAGGAATATACGAGAAAC
GCTTGACCAATTAGAAAATATATGCAAATGATTCGGTTTGATTTCATCGT
CTTTGGCACTGTTCATGCTTAGTCATCGAGTTTATGATTCAAAAGTCTAC
GTCATCgaaattgtattgaaaaacTTGCCTCagactttttgagctttttt
agAGAATGAATTCTAATTTCAACAGGGCGAGTCAAAGATCGTTAAACCAA
TTGCTAAAGTAGAACTGATCAAATATTATATGCTACTCAGGAATCACCCT
AACATTAAAAACTTAACATTGGTCAAGCTTCGGAGACCATCATGCCCTTG
GAATGATTTTGAATTATGAAAGGCGctatttcaatcatttttcaaatctc
TAAGATAAAATGATTCTCAGACCTTCACCAATGGCAATAGGGACTGCTTT
AATTATCATTTACAAGGGGGGGGGGCGGAGGTCATTGGACATTTTTGATA
TGGAAAGTATGATATTGTTTAGGCACACAGCTAACTGTTTGTTTATAAAT
GAATTTAGAATATAAATTAATAGAGGatttaaaataattattttaaagat
tttaatttgGCGTTATTCAAGTCAAGAAAATTACTCGATTGATACATTTT
AAATTAGTGAATCTATATTTTCATACCAATCAGCTGATTGATTCGAGgct
tgtaaaatcgctcgaaaAGTAAGAAGGGTGTCCATAAAAAAAGGATATAg
gatttttataaagaaagatTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011658-exon-sc0000131-1491911889:346041..346225 | TCONS_00011658-exon-sc0000131-1491911889:346041..346225 | Clytia hemisphaerica | exon |
| TCONS_00011658-exon-sc0000131-1510915933:346041..346225 | TCONS_00011658-exon-sc0000131-1510915933:346041..346225 | Clytia hemisphaerica | exon |
| TCONS_00011658-exon-sc0000131-1575043694:346041..346225 | TCONS_00011658-exon-sc0000131-1575043694:346041..346225 | Clytia hemisphaerica | exon |
| TCONS_00011658-exon-sc0000131-1491911889:352111..353264 | TCONS_00011658-exon-sc0000131-1491911889:352111..353264 | Clytia hemisphaerica | exon |
| TCONS_00011658-exon-sc0000131-1510915933:352111..353264 | TCONS_00011658-exon-sc0000131-1510915933:352111..353264 | Clytia hemisphaerica | exon |
| TCONS_00011658-exon-sc0000131-1575043694:352111..353264 | TCONS_00011658-exon-sc0000131-1575043694:352111..353264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:346041..353264 + |
Blast
BLAST of TCONS_00011658 vs. Swiss-Prot (Human)
Match: BORC6 (BLOC-1-related complex subunit 6 OS=Homo sapiens GN=BORCS6 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 6.162e-18 Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query: 338 VDPMVLPEIEEQAKIASKSIDRLMKFLSKELTEGTKATTDIVSVYDGTIDHVHSEVEQNIKAMYGLIAKCEELDRKMKPINELASQVRNIRETLDQLENICK 643
+DP VL ++E ++ +DRL++ L + E T + + Y +D + V+ +IK MY L+A+CEEL+R ++P+ LA QVR+IR TL+ LE +CK
Sbjct: 256 IDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK 357
The following BLAST results are available for this feature:
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