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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011393 ID=TCONS_00011393|Name=TCONS_00011393|organism=Clytia hemisphaerica|type=transcript|length=1643bpRun BLAST on NCBI protein sequence of TCONS_00011393-protein >TCONS_00011393-protein ID=TCONS_00011393-protein|Name=TCONS_00011393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp VQEKHLLKALESKDEKISEDANKRLKVVYAEMEAIGADKAESKARRILSGRun BLAST on NCBI transcript from alignment at sc0000127:398309..411988- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011393 ID=TCONS_00011393|Name=TCONS_00011393|organism=Clytia hemisphaerica|type=transcript|length=13680bp|location=Sequence derived from alignment at sc0000127:398309..411988- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:398309..411988- >TCONS_00011393 ID=TCONS_00011393|Name=TCONS_00011393|organism=Clytia hemisphaerica|type=CDS|length=24786bp|location=Sequence derived from alignment at sc0000127:398309..411988- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011393 vs. Swiss-Prot (Human)
Match: ABCF1 (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2) HSP 1 Score: 513.072 bits (1320), Expect = 3.114e-172 Identity = 287/457 (62.80%), Postives = 358/457 (78.34%), Query Frame = 2
Query: 5 QEKHLLKALESKDEKISEDANKRLKVVYAEMEAIGADKAESKARRILSGLGFTTEMQSRPTKNFSGGWRMRVSLARALFVEPTLLLLDEPTNHLDLNAVIWLDNYLQQWKKTLLVVSHDQQFLDNVCTDIIHLDMQKLYYYKGNYSSFKKMYKQKVREHEKAYEKQEKQIKALKASGKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLQRLKEYKVKFTXXXXXXXXXXXXXXXDAAFGYPGQPKLFNSVDFGIDMNSRIAIVGPNGVGKSTFIKMLLKKCDLVDGEVIKNPRLRIGFYNQHSADQLTLDESPVEYLQREFNMQYQDCRKLLGRFGLAGHAHTIKIKDLSGGQKSRVALADMASREPDIIILDEPTNNLDIESIDALAEAINQYTGGVIIVSHDARLILETNCQLWVIEDKSIEEIDGDFDDYRKEILDQLGEEAVSKKK 1375
+E+ L LE D+ +E RL+ VY E+ A GA AE+KARRIL+GLGF EMQ+RPT+ FSGGWRMRVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+VSHDQ FLD+VCTDIIHLD Q+L+YY+GNY +FKKMY+QK +E K YEKQEK++K LKA GKS + + ++++ +K Q+E S + ELL+R KEY V+FT +PPPL+PP+LGL FGY GQ LF ++DFGIDM+SRI IVGPNGVGKST + +L K GE+ KN RL+IGF+NQ A+QL ++E+P EYLQR FN+ YQD RK LGRFGL HAHTI+I LSGGQK+RV A++A REPD++ILDEPTNNLDIESIDAL EAIN+Y G VI+VSHDARLI ETNCQLWV+E++S+ +IDGDF+DY++E+L+ LGE VS+ +
Sbjct: 393 EERRLQGQLEQGDDTAAE----RLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKS-TKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRPR 844 The following BLAST results are available for this feature:
BLAST of TCONS_00011393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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