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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011390 ID=TCONS_00011390|Name=TCONS_00011390|organism=Clytia hemisphaerica|type=transcript|length=2838bpRun BLAST on NCBI protein sequence of TCONS_00011390-protein >TCONS_00011390-protein ID=TCONS_00011390-protein|Name=TCONS_00011390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=725bp MVKQNMNRSFCWPRNREKNTSTSSAEQSEDLLDMKTRIEVFSPEDEQDGKRun BLAST on NCBI transcript from alignment at sc0000127:337610..346701- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011390 ID=TCONS_00011390|Name=TCONS_00011390|organism=Clytia hemisphaerica|type=transcript|length=9092bp|location=Sequence derived from alignment at sc0000127:337610..346701- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:337610..346701- >TCONS_00011390 ID=TCONS_00011390|Name=TCONS_00011390|organism=Clytia hemisphaerica|type=CDS|length=21780bp|location=Sequence derived from alignment at sc0000127:337610..346701- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011390 vs. Swiss-Prot (Human)
Match: SO4A1 (Solute carrier organic anion transporter family member 4A1 OS=Homo sapiens GN=SLCO4A1 PE=1 SV=2) HSP 1 Score: 313.923 bits (803), Expect = 3.550e-93 Identity = 215/646 (33.28%), Postives = 326/646 (50.46%), Query Frame = 3
Query: 312 DGGRTFLCGFHHWTPQFLQWFANIHWFLPFISIFCLLQGMTVNGFIGASIPHIEREFGLTSTQSGILLASNDLTAILFVLFVSYYGERGHKPTWLGIGSIVTGLGAFIFALPKFMKGAYNPTMSPHGVNYMKHDTCAGNATSAFMELGNMADCDSAPSSNGYLAIFCVANMLMGIGATPLNTLGAAYLDENVSPKNSPIYIGIWYGMLILGPSIGLGSAGAFLKQYTNADGAPPPGITFMHPLWVGRWWYPFATLSWILVFNGFILMLFPKKMPGAPRIRQKAIQNGDIPQ-ESSELEEIRKNGFLGFLK----STLILMKNKYLMVVLVATSAELFIVTGLTPFFPKFLNSRFGADPVKAVVMLGTILITGSVVGLVVGSMIMRSFNIK-SSVKKATIISIVLAIINIGVSFSHDIPGCDNIN---------LERGALTLNNAVCNNNCGCLKEHYNPVC-ANGITYLSPCVAGC--TNKMNMTG---FSGCSCIEAKGGPQAINNQTLGSVRPGKCDQDCKNXXXXXXXXXXXXMSSLIGVTPKNMITLRSVPANQRSFAMGLHFLIVRLLGMLPGPIVVGKIYDRSCMVWKHDMCGHRAFCAEYELISLSSQIRNVALIGFVINLVLFVVAYWLYKDPSNDEN 2186
G++ CG+ + P LQ L F+ LQGMTVNGFI I +ER + L S QSG++ +S D+ A L + FVSY+G GHKP WLG G ++ G G+ +FALP F G Y + GV TC N + DS + Y +F + L G+GATPL TLG YLDENV SP+YI I+Y ILGP+ G GA L YT +T PLWVG WW F F ++ +P+++PG+ R ++ ++ Q + S E F ++ S +L+KN +++ +A + E ++TG++ F PKFL S+F +A + G +++ G +G + ++ S+V K + V++++ I V FS P L G L L A CN C C EHY+PVC ++G+ Y S C AGC + N+ G + CSCI PQ +++ G GKC C+ + ++FI V++ + + P TLR V QRSFA+G+ +++VR+LG +PGPI G + D++C++W+ D CG + C Y+ ++S I + L+ V+ ++ F +A +LYK S +
Sbjct: 79 SAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELD-AGVR-----TCPANPGAVCA--------DSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRRTE--LTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRY--AVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLRLRGSAVIKFCLFCTVVSLLGILV-FSLHCPSVPMAGVTASYGGSLLPEGHLNL-TAPCNAACSCQPEHYSPVCGSDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCI-----PQNLSSG-FGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPGPIAFGWVIDKACLLWQ-DQCGQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESSD 697 The following BLAST results are available for this feature:
BLAST of TCONS_00011390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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