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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011288 ID=TCONS_00011288|Name=TCONS_00011288|organism=Clytia hemisphaerica|type=transcript|length=4146bpRun BLAST on NCBI protein sequence of TCONS_00011288-protein >TCONS_00011288-protein ID=TCONS_00011288-protein|Name=TCONS_00011288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp MAKFDDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAWRun BLAST on NCBI transcript from alignment at sc0000124:566594..584208+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011288 ID=TCONS_00011288|Name=TCONS_00011288|organism=Clytia hemisphaerica|type=transcript|length=17615bp|location=Sequence derived from alignment at sc0000124:566594..584208+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:566594..584208+ >TCONS_00011288 ID=TCONS_00011288|Name=TCONS_00011288|organism=Clytia hemisphaerica|type=CDS|length=33306bp|location=Sequence derived from alignment at sc0000124:566594..584208+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011288 vs. Swiss-Prot (Human)
Match: NRCAM (Neuronal cell adhesion molecule OS=Homo sapiens GN=NRCAM PE=1 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 7.845e-26 Identity = 148/601 (24.63%), Postives = 234/601 (38.94%), Query Frame = 2
Query: 188 NAIGSPAQSTGTAVVLDKTIINRPIIAQSHEVGWKYAVFYCGCEWDPRLDLRVEWYKEGIRMAKFDDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGPP----EPPAAV-----KVSGNCKIRSE----VVITW-KKGEELA----------------LTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGP------PEPPAAVKVSGNCKIRSEVVITWKKGEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSYDVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNVTGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKERVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDKRPDNPPRNVRVADISRFSVQLNWDPVERAT------SYRIKYWNVTDAEALRGRSRRGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNVVSFKTEPRIPGIPSNVH-VSVYGRSAHINWQPPIHPNGYIEQYEVSWQ 1861
N + P + A L + I NRP A+ C P +EW+K A +D L + T L I G Y+C A K+G +E L+IK P +P AV VS CK++ + + + W K EL ++ D+G Y+C A T + +V + A S + P P PP ++++ ++ V ++W G++ + F IE+ ++ G W +E+ GTQ + + L P N FRV + PS SE + +T P NP V G + L + W+P+ P Y V +RQK D E + S++ + T V Y VQ+ N+ G + EPA+ SG+ P P NVRV ++ +++WDPV + YRI YW + R+RR I+ + G+L + + +V +N G + V F T +P PS++ V+ S + W PP HPNG + +Y + +Q
Sbjct: 448 NVLAEPPRILTPANTLYQVIANRP------------ALLDCAFFGSPLP--TIEWFKGAKGSALHEDIYVLHENGT-----LEIPVAQKDSTGTYTCVARNKLGMAKNEVH----LEIKDPTWIVKQPEYAVVQRGSMVSFECKVKHDHTLSLTVLWLKDNRELPSDERFTVDKDHLVVADVSDDDSGTYTCVANTTLDSVSASAVLSVVAPTPTPAPVYDVPNPPFDLELTD--QLDKSVQLSWTPGDDNNSPITKFIIEYE-DAMHKPGLWHH--------QTEVS---GTQTTAQLK--LSPYVNYSFRVMAVNSIGKSLPSEASE--QYLTKASEPDKNPTAVEGLG-SEPDNLVITWKPLNGFESNGPGLQYKVSWRQK--------DGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQALNDMGFAP-EPAVVMGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSK---RNRRHIEKKIL---TFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRV-FNTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYTLKYQ 990 The following BLAST results are available for this feature:
BLAST of TCONS_00011288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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