TCONS_00011288-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011288-protein
Unique NameTCONS_00011288-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011288-protein ID=TCONS_00011288-protein|Name=TCONS_00011288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp
MAKFDDRIYLEDRATGPPRLLYITDLTIQDAGNYSCHAYTKVGNVISEAW
ASNLLKIKGPPEPPAAVKVSGNCKIRSEVVITWKKGEELXLTIQDAGNYS
CHAYTKVGNVISEAWASNLLKIKGPPEPPAAVKVSGNCKIRSEVVITWKK
GEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSY
DVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNV
TGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKE
RVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDK
RPDNPPRNVRVADISRFSVQLNWDPVERATSYRIKYWNVTDAEALRGRSR
RGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNV
VSFKTEPRIPGIPSNVHVSVYGRSAHINWQPPIHPNGYIEQYEVSWQYNQ
DAGVSQTQGRTRITKDRRSREAYLIDIFQPYTYYDLQLSARNRVGDGERW
ERILFTVSDPDIPGKPGAPRAKPFDDTAINITFQRPTYGGLPKYFEVYYR
PRGQYYQVPKILKQEFPKRAWILVTGLDFLVYDFWTVGVNDMGQSETSDV
TEQQPLRKLKPQAHASDFPWWRSNWFVAITLCTLFILITMITVILLLKGG
PKTYRRLAETKQDKYNNGYNTGGSGYNGSSMPMQSKPPQPSGAGVAYGAG
AGAAAAVSNDRYDRNVSASEPEDHDAPPPRYSSQSSMEKKEPYSGSETGS
ETGSETGSDYSDTGSETGSDYSDEDGSYYSDEEKKRSDSEEETGDEEDTS
TFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006328XLOC_006328Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011288TCONS_00011288Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 352..444
e-value: 0.0031
score: 26.8
coord: 563..645
e-value: 0.23
score: 20.6
coord: 460..547
e-value: 3.3E-8
score: 43.3
coord: 240..336
e-value: 0.0017
score: 27.6
coord: 126..225
e-value: 4.0
score: 14.9
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 463..548
e-value: 2.3E-8
score: 34.2
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 462..561
score: 16.978
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 355..458
score: 13.176
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 565..662
score: 8.537
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 243..350
score: 10.746
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 125..241
score: 9.862
IPR003961Fibronectin type IIICDDcd00063FN3coord: 354..455
e-value: 1.12997E-4
score: 40.1723
IPR003961Fibronectin type IIICDDcd00063FN3coord: 126..233
e-value: 4.6884E-5
score: 41.3279
IPR003961Fibronectin type IIICDDcd00063FN3coord: 460..557
e-value: 2.25999E-9
score: 54.4247
IPR003961Fibronectin type IIICDDcd00063FN3coord: 563..652
e-value: 8.65417E-4
score: 37.4759
IPR003961Fibronectin type IIICDDcd00063FN3coord: 240..337
e-value: 5.51202E-4
score: 38.2463
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 354..557
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 523..654
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 125..337
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1..68
e-value: 5.9E-6
score: 25.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 103..130
e-value: 0.018
score: 14.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 457..558
e-value: 5.9E-15
score: 54.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 343..456
e-value: 2.5E-11
score: 43.2
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 238..342
e-value: 1.9E-7
score: 30.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 559..655
e-value: 1.2E-6
score: 28.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 131..237
e-value: 3.0E-8
score: 33.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 69..102
e-value: 0.035
score: 13.8
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 6..65

Blast
[Close]
BLAST of TCONS_00011288-protein vs. Swiss-Prot (Human)
Match: L1CAM (Neural cell adhesion molecule L1 OS=Homo sapiens GN=L1CAM PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.793e-23
Identity = 144/568 (25.35%), Postives = 219/568 (38.56%), Query Frame = 0 
Query:   21 LYITDLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGPPE----PPAAV-----KVSGNCKIR----SEVVITWK-KGEEL-------------------XLTIQDAGNYSCHAYTKVGNVISEAWASNLLKIKGPPEPPAAVKVSGNCKIRSEVVITWKKGEELAAETRGFFIEFSTNSSSSLGRWFGGKGDPLMPNSEIRATPGTQDSYDVTQYLVPGANLIFRVFGYSDHLDGRPSRPSEIGKCITSPDTPTMNPVNVTGTSKGQEGKLYVHWRPIADVYYGAPNFYYIVGYRQKAEAGTTPPDFAKERVDKNLTYASEFEIPSTSPNVEYEFYVQSGNEKGLSKVEPAIRSAKSGDKRPDNPPRNVRVADISRFSVQLNWDPVERAT------SYRIKYWNVTDAEALRGRSRRGANDPIVYQYQYSDQPNFGVLINMTAQVEFLASVTAINSGGMNEEESNVVSFKTEPRIPGIPSNVHVSVYGR-SAHINWQPPIHPNGYIEQYEVSWQYNQDAGVSQTQGRTRITKDRRSREAYLIDIFQPYTYYDLQLSARNRVGDGE 548
            L I DL   D G Y C A     NV   A     LK+K   +    P + +     +V+  C+       +  ITW+  G +L                    L   D GNYSC A T++  V S A    LL +  P   P  V    +   +S+V ++W   E+  A    + IEF  +   +  +W+            +   PG Q S   T  L P  +  FRV   + +  G PS  SE    +T    P  NPV+V G    +   + + W+P+  + + AP   Y V +R +   GT  P   +   D  L       + +TS  V YE  VQ+ N +G    EP +    SG+  P   P    +  ++  +V + W PV+ A        Y + YW   +    +   R    D +V     +      +L  +     +   V A N  G     ++  +F T   +PG P  +H+      S  + WQPP+  NG +  Y +S+    + G  Q     R   D   R   L D+  P+  Y  QL A  + G GE
Sbjct:  482 LGIRDLQANDTGRYFCLAANDQNNVTIMA----NLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRGDGRDLQELGDSDKYFIEDGRLVIHSLDYSDQGNYSCVASTELDVVESRA---QLLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFE-DKEMAPEKWYS-----------LGKVPGNQTS--TTLKLSPYVHYTFRVTAINKYGPGEPSPVSET--VVTPEAAPEKNPVDVKGEGN-ETTNMVITWKPLRWMDWNAPQVQYRVQWRPQ---GTRGPWQEQIVSDPFLV------VSNTSTFVPYEIKVQAVNSQGKGP-EPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWR--EGSQRKHSKRHIHKDHVVVPANTTSV----ILSGLRPYSSYHLEVQAFN--GRGSGPASEFTFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLR---DPELRTHNLTDL-SPHLRYRFQLQATTKEGPGE 1003
The following BLAST results are available for this feature:
BLAST of TCONS_00011288-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
L1CAM3.793e-2325.35Neural cell adhesion molecule L1 OS=Homo sapiens G... [more]
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