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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011282 ID=TCONS_00011282|Name=TCONS_00011282|organism=Clytia hemisphaerica|type=transcript|length=1941bp
ATGCTGGGTCGGTTACTACTGTATGTTGACTTACATTCATAAAATTATGT
GTCCCCTTACCAACAAGCACCTACtgtatattttcatatttttatatttt
tcagagATTACTAATAtacaaattatcaaaaaaaaaaatacaatacatat
TTGGAACTTATATATACGTAAATGGTTATCACCCTTACAATGGCGTAATC
AAACTTATTGATGACTTAACATTACGTAATTGGAACTACGTATGGAACAT
AACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATGCTGAGGG
GTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCTGAAGAAG
GGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCTTTTCAAA
TCAGGATCTGACTTGGTTGATGATTTTGCTCTCAAAATGAAGTTGGAGAA
ACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACTTCCCCGAAG
ATAACATCAAATTACCCAACTACACTTCTAATATTACGGACAGCATAACA
AAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGGTATCCCGTT
AGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCGGCTCGACGA
GTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAAGAATTgaga
gatttttttgaaaagcaaATCACGTGGTTattggaagaagaagaaggaga
agactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACGCCCTTGTGT
TACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTTAGTTTCTTG
GCTAGGCGAGACGAACCAGTCGCCATATCATTTAGTAAGATACAAATTGG
TCTCGATAGCCTGATGTTTTGCTTGTTTCAAGCCTGAGTAAAGATTTGAT
TGAATGAGGCATGGAGATGAATAATGTTTGACAGTTTTAATGTCAAAGTT
TTGGCCAAGGATATCATAAATAATTCAGTAGTGAGACTAGTACGGGCGAA
TATCTCAACTTTTGTTCTGATTTTTAATTCAGACCATCGATAGATTGAGA
TAAATATTCGAACAATAAGCGAGAATAAGGCAGCATGGTTCTACTTCGCt
gttgacaaatcaaaaggtCCAACCTCAAGATTATTGCCTGAGAAAActaa
gaatttttctgtttgtctaaacacaaattttgagattgaccctGTTTCAT
GTAGAAAGGACCCTCCTCACTATTCAAAATAGGCCAATCTCAAATTTTAG
GCTAGCTAGACAGAAAAACTCCTAGCTTTCCCAGACACTAATTTTGTGAT
TGacccttttgattggtcaacAGCAATTTGAGACCTGAAATCTTTCTCTC
AGGCATCCTAAAGGTTTTCCGCTTCAAAACCTTCTGCTGGGTTGGTTGGT
ATATACTTAGATTTCACGTTGGAAATCGATCTTTACTAGACCTCTCTTAT
ATCGATATTGAATTATATATCTCAGTAATCTACAAAAATGAAATAAGATA
TAACTCTGTCGAGGTGATAAGATGGATGTTTTTTGAATATGAAACAGTTG
AAATTGTATGTCCTGGCACATCTGTAAATCAAGTTTGCCTCATTTTAAcg
atatcactcaaaaaaattgaatattcgTATTTTGTTacgaaaatgataaa
attttgagttaCACATTTAAGGCGAAAAATAAAACCAACAGCAAACGCCT
GATGTTTTCTATATGCTTTCTTATAAACTTGGTATGAAAGAGTAGACTAA
AAAAATGACCGTACGTGTGACCCCAAATAACCCTTACGGTGCTTTTTCTT
GAGAATTTTTGAGGGCAAAGTATGGTCaccttttccaaattttaccaccc
ttagagtgcaatttttctcatctttgctcattttgaCCCNN Run BLAST on NCBI transcript from alignment at sc0000124:535840..539288+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011282 ID=TCONS_00011282|Name=TCONS_00011282|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at sc0000124:535840..539288+ (Clytia hemisphaerica)
ATGCTGGGTCGGTTACTACTGTATGTTGACTTACATTCATAAAATTATGT
GTCCCCTTACCAACAAGCACCTACtgtatattttcatatttttatatttt
tcagagATTACTAATAtacaaattatcaaaaaaaaaaatacaatacatat
TTGGAACTTATATATACGTAAATGGTTATCACCCTTACAATGGCGTAATC
AAACTTATTGATGACTTAACATTACGTAATTGGAACTACGTATGGAACAT
AACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATGCTGAGGG
GTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCTGAAGAAG
GGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCTTTTCAAA
TCAGGATCTGACTTGGTTGATGATTTTGCTgtaagtttgatttttctttt
tttcgttcAATTACCACCGTTAGTCCTTTACTGATCTCTTaagtagtaag
tctgcgaccgcagtcggaggcgacccgaagtctcctctttcgatagctgt
ctacccgaatgtaggggagggcaccactTATTcgccctggatttctccac
ttacccttgatccttctcttaattgctaagcaccaagcagagaggcatca
agtaccattttgagaatctttggtatgacccggctgggggttgaaccgtA
GCctgatgctctaccactgcaccacGGCTCAATAATCTCGAAAATATCAT
CAGCAATCTGTATTTTGTTGAATAAAAGCTTTGACCCATTTTTAAGCTAC
GGTCTTTTGTAGAAATCAATTACTGtttgatttaattatttttgttgttt
aatGACAGGAAGGGAATTGAGGTTTTAGATCTGGGTAGACTTCCTTTAAA
GTGGTGTCGTAACTAAAGGCCATTCGCTTTAAGTATCCCACTCTTCATTG
CTACCATATGCTGAAATCACGATCAAAAGAAAATCAGGCTCATTACGCTT
ACATGTTTTAAGTTAAGAACAGTCTTTAACTCGCTTTATGTTTTGGGTTA
AAACATTCAGGGGTCCCTAAAGGCCGGTCTCCACTTGTGCGCGCTGTGAT
TGCACCTTTTGGCCTCAATCCTTTTTGCTTGGAAAAAAGATTACGTCATA
AAAATGTAGCGCGCGCTCGGTACGATCGAAGCGCGCGCAAGTTGAGACCG
GCCTTAAGATGTACGGATGTACTAAACTGCAGTTTTTCACATGGTAGCTA
AGAACAGTCTTTAACTCGCTTTATGTATGTGGTTAAAACATTCAGAGGTc
cctaaaggccggtctccacttgtgcGCGCTGTGATTGCACCTTTTGGcct
caatcctttttgcttggaaaaaagattacgtcataaaaatgtagcgcgcg
ctcggtacgatcgaagcgcgcgcaagttgagaccggccttaagatgTACG
GATGTACTAAACTGCAGTTTTTCACATGGTAGCTAAGAACAGTCTTTAAC
TCGCTTTATGTATGTGGTTAAAACATTCAGGGGTccctaaaggccggtct
ccacttgtgcGCGCTGTGATTGCACCTTTTGGCCTCAAtccttttagctt
ggaaaaaagattacgtcataaaaatgtagcgcgcgctcggtacgatcgaa
gcgcgcgcaagttgagaccggccttaagatgTATGGATGTACTAAACTGC
AAAAAATAAGCCGGCCAGTTGGAAACcactttcaaagaattcttcaGAAA
TCGGTCTGATAAGGCAATCTAACTCTTGTACGTTTTTATTGGAACGAGTT
ATGACAAAGTTTTGACTGAAATCTTCATTGATGTGTATCCAGTCTATTTA
AATCAAGGTCTTTTTTATTGTCCCATGCTGACCCTCTGATGCAAAAACTG
AATTATTATAtgaagttcttttttttttttatctacagCTCAAAATGAAG
TTGGAGAAACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACTT
CCCCGAAGATAACATCAAATTACCCAACTACACTTCTAATATTACGGACA
GCATAACAAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGGT
ATCCCGTTAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCGG
CTCGACGAGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAAG
AATTgagagatttttttgaaaagcaaATCACGTGGTTattggaagaagaa
gaaggagaagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACGC
CCTTGTGTTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTTA
GTTTCTTGGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGTAAGATA
CAAATTGGTCTCGATAGCCTGATGTTTTGCTTGTTTCAAGCCTGAGTAAA
GATTTGATTGAATGAGGCATGGAGATGAATAATGTTTGACAGTTTTAATG
TCAAAGTTTTGGCCAAGGATATCATAAATAATTCAGTAGTGAGACTAGTA
CGGGCGAATATCTCAACTTTTGTTCTGATTTTTAATTCAGACCATCGATA
GATTGAGATAAATATTCGAACAATAAGCGAGAATAAGGCAGCATGGTTCT
ACTTCGCtgttgacaaatcaaaaggtCCAACCTCAAGATTATTGCCTGAG
AAAActaagaatttttctgtttgtctaaacacaaattttgagattgaccc
tGTTTCATGTAGAAAGGACCCTCCTCACTATTCAAAATAGGCCAATCTCA
AATTTTAGGCTAGCTAGACAGAAAAACTCCTAGCTTTCCCAGACACTAAT
TTTGTGATTGacccttttgattggtcaacAGCAATTTGAGACCTGAAATC
TTTCTCTCAGGCATCCTAAAGGTTTTCCGCTTCAAAACCTTCTGCTGGGT
TGGTTGGTATATACTTAGATTTCACGTTGGAAATCGATCTTTACTAGACC
TCTCTTATATCGATATTGAATTATATATCTCAGTAATCTACAAAAATGAA
ATAAGATATAACTCTGTCGAGGTGATAAGATGGATGTTTTTTGAATATGA
AACAGTTGAAATTGTATGTCCTGGCACATCTGTAAATCAAGTTTGCCTCA
TTTTAAcgatatcactcaaaaaaattgaatattcgTATTTTGTTacgaaa
atgataaaattttgagttaCACATTTAAGGCGAAAAATAAAACCAACAGC
AAACGCCTGATGTTTTCTATATGCTTTCTTATAAACTTGGTATGAAAGAG
TAGACTAAAAAAATGACCGTACGTGTGACCCCAAATAACCCTTACGGTGC
TTTTTCTTGAGAATTTTTGAGGGCAAAGTATGGTCaccttttccaaattt
taccacccttagagtgcaatttttctcatctttgctcattttgaCCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011282-exon-sc0000124-1491911889:535840..536269 | TCONS_00011282-exon-sc0000124-1491911889:535840..536269 | Clytia hemisphaerica | exon |
| TCONS_00011282-exon-sc0000124-1510915933:535840..536269 | TCONS_00011282-exon-sc0000124-1510915933:535840..536269 | Clytia hemisphaerica | exon |
| TCONS_00011282-exon-sc0000124-1575043694:535840..536269 | TCONS_00011282-exon-sc0000124-1575043694:535840..536269 | Clytia hemisphaerica | exon |
| TCONS_00011282-exon-sc0000124-1491911889:537778..539288 | TCONS_00011282-exon-sc0000124-1491911889:537778..539288 | Clytia hemisphaerica | exon |
| TCONS_00011282-exon-sc0000124-1510915933:537778..539288 | TCONS_00011282-exon-sc0000124-1510915933:537778..539288 | Clytia hemisphaerica | exon |
| TCONS_00011282-exon-sc0000124-1575043694:537778..539288 | TCONS_00011282-exon-sc0000124-1575043694:537778..539288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:535840..539288 + |
Blast
The following BLAST results are available for this feature:
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