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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011281 ID=TCONS_00011281|Name=TCONS_00011281|organism=Clytia hemisphaerica|type=transcript|length=2329bp
ANGCAGTAGAAGATCAAGTAACTGGTGCGCCACCCGAAGAAGCTATAGCT
CCAGACGAAGGCACAGAAGATATTATAAAATATGATGAAGATGAGTTACT
TGTCAAACTTGTGCACAGTTATCGCTTCCTTTGGGATCCATTGACCAAAG
GGTATAAAGATAATGACGAAAAGAAAAGAGCTTGGAGAGATATTTCAGCT
GCCTTGAATAAAGATGTTGATTTTCTAAAGAGGCGTTGGAAGAATTTACG
AGATGGCATGATGAGATGTCTAAAGAAAGAAAACGCATCATTCCGATCAA
ACAGTAAAGTTCCGACATGTCGACTATACAACCAACTCATTTTCCTGAAA
GAGTTTTTCCAAGGGAACAATGTAGACGAGAAACTACTGGTCAGTTTCAA
TGGGGAGAACGACAATGATATAGAAATGCCAGACTCCCCGCACAGCAACT
CTTCACCGACACACACCGAACAGAACCAGGTTGGACGCAAGCGGTCAGCC
TCCTCCACCTTAGAACCTGTCCACCAGAGTAAATACAGTAAAAGGGAGCG
TGAGAAATTAGACATCATTATTGCAAACACTTTATCTAAATTGACTGACC
AGCTGAAAAGTGACGAAGAAAATTCAAACTGGTTGTTCTGTAAAAGTTTA
GTTGGACTATTAGGGAAATTGAGTCCACGTCGTAATAGACTAGCTAGAAT
GGAAATTCAACAAGTGCTCATGAAATACGAATTTGGGGATGAGGTACCGG
CTGAGGAAGCCTTGGTGGAGGAATAGAATGATCTTAATTCATCTATGGAA
AGGAGCAGttttaatttatcatttttctggatggatttcatttttttgca
cTTCATTTGGATTGGATTGGTTTACATGAATTTGGTggaatttccttgtt
ttttatcgaattgtttttttgcttcACTCCTGAAAAGGCTGAATAAACAA
TTTCTGGTTCAACATTTACAACTCGCCTACAAAAATGGTTTAAGCTTtac
ttttaaaatgaaaataatggtTAAAAGAGGAGATGCTGTATTACTTGAGG
CGatgaatttaatttgaaaaaactgtAACATAACTAAAGAGTCTCATTTT
TAAACTAGAGGGAAAAGTACAGCTGGATTATGGGTCATTTTCGGATCAAT
AGCATTGGTGATATCTCTTGCGAtatctttttcaaattgaagTTTGCAAT
CAAACAAGATTACATTTAAACTTGGAGACTCGAAATTTTGTTCTCTAACA
CATAAAGATTCGCCAAATTGCAGATGGTGATGTTACGCTGTAAAATCATT
ACCAAGGATGATATGGTATTGTTTTTTTCAAGTACGgtatgaataatttt
tttctccatttcaaTTACTCCTTGGGTTAGGTtgggttcatttctaaaca
aggGCGTTGCTGGTACTAAAATCCCAGACATGACATGAGTACTTTAAAGT
GTTTTTCATCCCGGTTTATCATAGAAGTGGTGTTTTAGCACACTATGTAC
TCACTCGCTATGTTGTCAGAGATTTTatagtactgacccccccccctgtt
ctAAAAGGTGTGAATATGCTACTTTTTTAAGGTGTCAATGCTACTTTACA
CTCCTTCCTTTCGACTTTCATTTCCTCAGTGTTTGCTAGGCCATATTTTG
CATTATCacgtttcaaaaattcatttcttgGCTTTTATTTCCATAAGGCC
TGCTTTCCtttcatttttgctgtaaaaaaaatcgtttctattaaagtctg
tctcaatataatttgcagtggATACACAAaaagctgtaacttttgatata
attcGATATCGAATAATCGAttagattttcttcttcttcattttcaatct
tcattttccgatctttttttagtttttttaatgatattccactcctgttt
atcttttcaacaagcacaaaactgcaatctaattcgaattatgtcaaaag
ttatagccttttttgtctccgctgcaacacttcaaattatattgagacag
actttaaattGTTCAAACAAACTGCAAACATTCTCAAGNtagcctttttt
gtctccgctgcagcaccgcaaattatattgagacagactttaaatcGTTC
AAACAAACGGCAAACAttctcaagttttttttatgtaGGTACACATTATA
TTATTCTAATTTCTAATGTTAAGGACAATTTagtttacaaaaattatttt
aagctTAGATATGATGCCCACTGTATATACTTTATTTCAAGGGTATAGGT
TTTTTAAATAAGGACCGTTTATTATTCATAATAATTAATTGGCtggtttc
tttttataataatgttttttttttctggg Run BLAST on NCBI transcript from alignment at sc0000124:514042..518578+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011281 ID=TCONS_00011281|Name=TCONS_00011281|organism=Clytia hemisphaerica|type=transcript|length=4537bp|location=Sequence derived from alignment at sc0000124:514042..518578+ (Clytia hemisphaerica)
ANGCAGTAGAAGATCAAGTAACTGGTGCGCCACCCGAAGAAGCTATAGCT
CCAGACGAAGGTAAGACTTTTTTAAACTATTGAAGAAGCTATTTAGTATT
TAATTATTAATAGTATCAAGTCAAAACACATCCTATATAGTAAAAGATTT
TTATGTGTATAATCATAAAACTGTATTTTGAGCTCTCCATGGTTTTCCTC
TGGTCTTTATGGACATGTACATTTgtgcagggctcgaaataacggtcgga
catcggacattgtccgacccaattgctgaaatgtccgacccaaatcgatt
ctagtcggacatcatgtccgaccaAATTACTTTCGGTGCCTTcgaaaaat
ttgtcagatgcgttgtgaaatttccaaaagaaattgtaatttacatagaa
ttagtaacatctttatttacacacaaaaactctcaaagttgcaatcatta
gtgttagatattcattttgtgtgatgctttttctcaacaaatgaaaGCAT
GCTTCAAGTAAAAATCATGGGCTTCTGACCATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGT
CCGacacaaatcaatttttgatcggacaatgtgtccgaccacctaaatat
cgttatttcgagccctgtttGTGCAAAAGGGAAACAAAAGGTGCTACCCC
AATCAATACATGGATCGTACTTTCCCATACTTCCACACAAACTCAACCAT
ATGTTCAAACTCAATACTTTTTTCCCAGACAACTGTATAATGCCTTCTAT
ATTTTGTCATAATATTCAGGCACAGAAGATATTATAAAATATGATGAAGA
TGAGTTACTTGTCAAACTTGTGCACAGTTATCGCTTCCTTTGGGATCCAT
TGACCAAAGGGTATAAAGATAATGACGAAAAGAAAAGAGCTTGGAGAGAT
ATTTCAGCTGCCTTGAATAAAGATGGTAAGTAATGAAACAGTTTTGCGTC
CTATTACTGCCAGACTTTGCATGTTATAATTTTGTCAGGGGTCAGTTTGT
ACATGAGAACCATGGCATTCAATGgtctaattttgaaagtggCAAAATAA
AGTTAATTACACCCTATGAACTAAGTGCAAAAACAGGTAATATACTTAGC
CATTAACAACAATTTTTATGTACTAACCGGTACTAACTgtcaaaaattaa
gttttttggacctacctcggtggggtggaggtcctaaattaacctgtgtt
catTCGTTTGTCCGTTTGTCCTTCCGTCTGTTcattcgtctgttaccaac
ttttctcagtattgaatcataggaatcttttgatttttggtagaaagttg
caaaatggtggtggccaaaatgtgacggagcccaatttttgaaaaaaaaa
atttgggggcaaatttgggccaaataaaatttttcccaaaaattacaatg
tttttttataaaaaacaagtaatacttttatggacctagctggttatcaa
actaaaatcaatgaaacaatgaaacacataagacataactggtcaaaata
caaaaaaataaagaaaaatgaaagcatatctattgagagaaactttcaac
actattgaaaaagacttatgaaaaagaaataaaaaagcttaaaaaatgtt
ttctttcttcttgTATTTTGTAGTTGATTTTCTAAAGAGGCGTTGGAAGA
ATTTACGAGATGGCATGATGAGATGTCTAAAGAAAGAAAACGCATCATTC
CGATCAAACAGTAAAGTTCCGACATGTCGACTATACAACCAACTCATTTT
CCTGAAAGAGTTTTTCCAAGGGAACAATGTAGACGAGAAACTACTGGTCA
GTTTCAATGGGGAGAACGACAATGATATAGAAATGCCAGACTCCCCGCAC
AGCAACTCTTCACCGACACACACCGAACAGAACCAGGTTGGACGCAAGCG
GTCAGCCTCCTCCACCTTAGAACCTGTCCACCAGAGTAAATACAGTAAAA
GGGAGCGTGAGAAATTAGACATCATTATTGCAAACACTTTATCTAAATTG
ACTGACCAGCTGAAAAGTGACGAAGAAAATTCAAACTGGTTGTTCTGTAA
AAGTTTAGTTGGACTATTAGGGAAATTGAGTCCACGTCGTAATAGACTAG
CTAGAATGGAAATTCAACAAGTGCTCATGAAATACGAATTTGGGGATGAG
GTACCGGCTGAGGAAGCCTTGGTGGAGGAATAGAATGATCTTAATTCATC
TATGGAAAGGAGCAGttttaatttatcatttttctggatggatttcattt
ttttgcacTTCATTTGGATTGGATTGGTTTACATGAATTTGGTggaattt
ccttgttttttatcgaattgtttttttgcttcACTCCTGAAAAGGCTGAA
TAAACAATTTCTGGTTCAACATTTACAACTCGCCTACAAAAATGGTTTAA
GCTTtacttttaaaatgaaaataatggtTAAAAGAGGAGATGCTGTATTA
CTTGAGGCGatgaatttaatttgaaaaaactgtAACATAACTAAAGAGTC
TCATTTTTAAACTAGAGGGAAAAGTACAGCTGGATTATGGGTCATTTTCG
GATCAATAGCATTGGTGATATCTCTTGCGAtatctttttcaaattgaagT
TTGCAATCAAACAAGATTACATTTAAACTTGGAGACTCGAAATTTTGTTC
TCTAACACATAAAGATTCGCCAAATTGCAGATGGTGATGTTACGCTGTAA
AATCATTACCAAGGATGATATGGTATTGTTTTTTTCAAGTACGgtatgaa
taatttttttctccatttcaaTTACTCCTTGGGTTAGGTtgggttcattt
ctaaacaaggGCGTTGCTGGTACTAAAATCCCAGACATGACATGAGTACT
TTAAAGTGTTTTTCATCCCGGTTTATCATAGAAGTGGTGTTTTAGCACAC
TATGTACTCACTCGCTATGTTGTCAGAGATTTTatagtactgaccccccc
ccctgttctAAAAGGTGTGAATATGCTACTTTTTTAAGGTGTCAATGCTA
CTTTACACTCCTTCCATTCGACTTTCATTTCCTCAGTGTTNccccccccc
ccccccctgttctAAAAGGTGTGAATATGCTACTTTAAGGTGTCAATGCT
ACTTTACACTCCTTCCTTTCGACTTTCATTTCCTCAGTGTTTGCTAGGCC
ATATTTTGCATTATCacgtttcaaaaattcatttcttgGCTTTTATTTCC
ATAAGGCCTGCTTTCCtttcatttttgctgtaaaaaaaatcgtttctatt
aaagtctgtctcaatataatttgcagtggATACACAAaaagctgtaactt
ttgatataattcGATATCGAATAATCGAttagattttcttcttcttcatt
ttcaatcttcattttccgatctttttttagtttttttaatgatattccac
tcctgtttatcttttcaacaagcacaaaactgcaatctaattcgaattat
gtcaaaagttatagccttttttgtctccgctgcaacacttcaaattatat
tgagacagactttaaattGTTCAAACAAACTGCAAACATTCTCAAGNtag
ccttttttgtctccgctgcagcaccgcaaattatattgagacagacttta
aatcGTTCAAACAAACGGCAAACAttctcaagttttttttatgtaGGTAC
ACATTATATTATTCTAATTTCTAATGTTAAGGACAATTTagtttacaaaa
attattttaagctTAGATATGATGCCCACTGTATATACTTTATTTCAAGG
GTATAGGTTTTTTAAATAAGGACCGTTTATTATTCATAATAATTAATTGG
Ctggtttctttttataataatgttttttttttctggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011281-exon-sc0000124-1491911889:514042..514101 | TCONS_00011281-exon-sc0000124-1491911889:514042..514101 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1510915933:514042..514101 | TCONS_00011281-exon-sc0000124-1510915933:514042..514101 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1575043694:514042..514101 | TCONS_00011281-exon-sc0000124-1575043694:514042..514101 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1491911889:515511..515666 | TCONS_00011281-exon-sc0000124-1491911889:515511..515666 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1510915933:515511..515666 | TCONS_00011281-exon-sc0000124-1510915933:515511..515666 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1575043694:515511..515666 | TCONS_00011281-exon-sc0000124-1575043694:515511..515666 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1491911889:516365..517729 | TCONS_00011281-exon-sc0000124-1491911889:516365..517729 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1510915933:516365..517729 | TCONS_00011281-exon-sc0000124-1510915933:516365..517729 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1575043694:516365..517729 | TCONS_00011281-exon-sc0000124-1575043694:516365..517729 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1491911889:517831..518578 | TCONS_00011281-exon-sc0000124-1491911889:517831..518578 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1510915933:517831..518578 | TCONS_00011281-exon-sc0000124-1510915933:517831..518578 | Clytia hemisphaerica | exon |
| TCONS_00011281-exon-sc0000124-1575043694:517831..518578 | TCONS_00011281-exon-sc0000124-1575043694:517831..518578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:514042..518578 + |
Blast
The following BLAST results are available for this feature:
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