XLOC_006325 (gene) - C. hemisphaerica

Overview
NameXLOC_006325
Unique NameXLOC_006325
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000124:513685..518578+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006325 ID=XLOC_006325|Name=XLOC_006325|organism=Clytia hemisphaerica|type=gene|length=4894bp|location=Sequence derived from alignment at sc0000124:513685..518578+ (Clytia hemisphaerica)
gaaaaagagaaagagaaaacaaaaagaaaaacatcatcatcagcacaata
aaaaagtgtattttttttattcttgcaattataatttttcagTTGACATA
AATTAATATAAAACCATGGAAGAGcctataaaacaaaatgaagaaaatat
tcCACTTGCTGCAGAACCAAATGGAAACGAAGAATCAGAAGTAGCAGCAG
CTGTTATCGCAGTAGAAGATCAAGTGACTGGTGCGCCACCCGAAGAAGCA
ATAGCTCCAGACGAAGGTAAGACTTTTTTAACTATTGAAGAAGTTATTTA
GTATTTAATTATTAATAGTATCAAGTCAAAACACATCCTATATAGTAAAA
GATTTTTANGCAGTAGAAGATCAAGTAACTGGTGCGCCACCCGAAGAAGC
TATAGCTCCAGACGAAGGTAAGACTTTTTTAAACTATTGAAGAAGCTATT
TAGTATTTAATTATTAATAGTATCAAGTCAAAACACATCCTATATAGTAA
AAGATTTTTATGTGTATAATCATAAAACTGTATTTTGAGCTCTCCATGGT
TTTCCTCTGGTCTTTATGGACATGTACATTTgtgcagggctcgaaataac
ggtcggacatcggacattgtccgacccaattgctgaaatgtccgacccaa
atcgattctagtcggacatcatgtccgaccaAATTACTTTCGGTGCCTTc
gaaaaatttgtcagatgcgttgtgaaatttccaaaagaaattgtaattta
catagaattagtaacatctttatttacacacaaaaactctcaaagttgca
atcattagtgttagatattcattttgtgtgatgctttttctcaacaaatg
aaaGCATGCTTCAAGTAAAAATCATGGGCTTCTGACCATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATGTCCGacacaaatcaatttttgatcggacaatgtgtccgaccacc
taaatatcgttatttcgagccctgtttGTGCAAAAGGGAAACAAAAGGTG
CTACCCCAATCAATACATGGATCGTACTTTCCCATACTTCCACACAAACT
CAACCATATGTTCAAACTCAATACTTTTTTCCCAGACAACTGTATAATGC
CTTCTATATTTTGTCATAATATTCAGGCACAGAAGATATTATAAAATATG
ATGAAGATGAGTTACTTGTCAAACTTGTGCACAGTTATCGCTTCCTTTGG
GATCCATTGACCAAAGGGTATAAAGATAATGACGAAAAGAAAAGAGCTTG
GAGAGATATTTCAGCTGCCTTGAATAAAGATGGTAAGTAATGAAACAGTT
TTGCGTCCTATTACTGCCAGACTTTGCATGTTATAATTTTGTCAGGGGTC
AGTTTGTACATGAGAACCATGGCATTCAATGgtctaattttgaaagtggC
AAAATAAAGTTAATTACACCCTATGAACTAAGTGCAAAAACAGGTAATAT
ACTTAGCCATTAACAACAATTTTTATGTACTAACCGGTACTAACTgtcaa
aaattaagttttttggacctacctcggtggggtggaggtcctaaattaac
ctgtgttcatTCGTTTGTCCGTTTGTCCTTCCGTCTGTTcattcgtctgt
taccaacttttctcagtattgaatcataggaatcttttgatttttggtag
aaagttgcaaaatggtggtggccaaaatgtgacggagcccaatttttgaa
aaaaaaaatttgggggcaaatttgggccaaataaaatttttcccaaaaat
tacaatgtttttttataaaaaacaagtaatacttttatggacctagctgg
ttatcaaactaaaatcaatgaaacaatgaaacacataagacataactggt
caaaatacaaaaaaataaagaaaaatgaaagcatatctattgagagaaac
tttcaacactattgaaaaagacttatgaaaaagaaataaaaaagcttaaa
aaatgttttctttcttcttgTATTTTGTAGTTGATTTTCTAAAGAGGCGT
TGGAAGAATTTACGAGATGGCATGATGAGATGTCTAAAGAAAGAAAACGC
ATCATTCCGATCAAACAGTAAAGTTCCGACATGTCGACTATACAACCAAC
TCATTTTCCTGAAAGAGTTTTTCCAAGGGAACAATGTAGACGAGAAACTA
CTGGTCAGTTTCAATGGGGAGAACGACAATGATATAGAAATGCCAGACTC
CCCGCACAGCAACTCTTCACCGACACACACCGAACAGAACCAGGTTGGAC
GCAAGCGGTCAGCCTCCTCCACCTTAGAACCTGTCCACCAGAGTAAATAC
AGTAAAAGGGAGCGTGAGAAATTAGACATCATTATTGCAAACACTTTATC
TAAATTGACTGACCAGCTGAAAAGTGACGAAGAAAATTCAAACTGGTTGT
TCTGTAAAAGTTTAGTTGGACTATTAGGGAAATTGAGTCCACGTCGTAAT
AGACTAGCTAGAATGGAAATTCAACAAGTGCTCATGAAATACGAATTTGG
GGATGAGGTACCGGCTGAGGAAGCCTTGGTGGAGGAATAGAATGATCTTA
ATTCATCTATGGAAAGGAGCAGttttaatttatcatttttctggatggat
ttcatttttttgcacTTCATTTGGATTGGATTGGTTTACATGAATTTGGT
ggaatttccttgttttttatcgaattgtttttttgcttcACTCCTGAAAA
GGCTGAATAAACAATTTCTGGTTCAACATTTACAACTCGCCTACAAAAAT
GGTTTAAGCTTtacttttaaaatgaaaataatggtTAAAAGAGGAGATGC
TGTATTACTTGAGGCGatgaatttaatttgaaaaaactgtAACATAACTA
AAGAGTCTCATTTTTAAACTAGAGGGAAAAGTACAGCTGGATTATGGGTC
ATTTTCGGATCAATAGCATTGGTGATATCTCTTGCGAtatctttttcaaa
ttgaagTTTGCAATCAAACAAGATTACATTTAAACTTGGAGACTCGAAAT
TTTGTTCTCTAACACATAAAGATTCGCCAAATTGCAGATGGTGATGTTAC
GCTGTAAAATCATTACCAAGGATGATATGGTATTGTTTTTTTCAAGTACG
gtatgaataatttttttctccatttcaaTTACTCCTTGGGTTAGGTtggg
ttcatttctaaacaaggGCGTTGCTGGTACTAAAATCCCAGACATGACAT
GAGTACTTTAAAGTGTTTTTCATCCCGGTTTATCATAGAAGTGGTGTTTT
AGCACACTATGTACTCACTCGCTATGTTGTCAGAGATTTTatagtactga
cccccccccctgttctAAAAGGTGTGAATATGCTACTTTTTTAAGGTGTC
AATGCTACTTTACACTCCTTCCATTCGACTTTCATTTCCTCAGTGTTNcc
cccccccccccccctgttctAAAAGGTGTGAATATGCTACTTTAAGGTGT
CAATGCTACTTTACACTCCTTCCTTTCGACTTTCATTTCCTCAGTGTTTG
CTAGGCCATATTTTGCATTATCacgtttcaaaaattcatttcttgGCTTT
TATTTCCATAAGGCCTGCTTTCCtttcatttttgctgtaaaaaaaatcgt
ttctattaaagtctgtctcaatataatttgcagtggATACACAAaaagct
gtaacttttgatataattcGATATCGAATAATCGAttagattttcttctt
cttcattttcaatcttcattttccgatctttttttagtttttttaatgat
attccactcctgtttatcttttcaacaagcacaaaactgcaatctaattc
gaattatgtcaaaagttatagccttttttgtctccgctgcaacacttcaa
attatattgagacagactttaaattGTTCAAACAAACTGCAAACATTCTC
AAGNtagccttttttgtctccgctgcagcaccgcaaattatattgagaca
gactttaaatcGTTCAAACAAACGGCAAACAttctcaagttttttttatg
taGGTACACATTATATTATTCTAATTTCTAATGTTAAGGACAATTTagtt
tacaaaaattattttaagctTAGATATGATGCCCACTGTATATACTTTAT
TTCAAGGGTATAGGTTTTTTAAATAAGGACCGTTTATTATTCATAATAAT
TAATTGGCtggtttctttttataataatgttttttttttctggg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011280TCONS_00011280Clytia hemisphaericatranscript
TCONS_00011281TCONS_00011281Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011280-proteinTCONS_00011280-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:513685..518578 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.22	33.96	24.91	25.81	51.45	35.37	39.99	41.92	20.09	21.92	15.86	10.05	12.29	8.77	11.89	11.94	23.63	21.39	4.91	7.18	14.48	15.17	24.54	24.78	23.95	27.01	14.62	10.21	17.68	18.26