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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011125 ID=TCONS_00011125|Name=TCONS_00011125|organism=Clytia hemisphaerica|type=transcript|length=3714bp
CTGATTGAACGGGGCCACCAACCGACGCTGATACAGTGAAGTCAATAGAG
CTGTCATCTTTATCACTCCCTTTCGACAATTCTTTCTTGCTTTGGTACGG
ATCCAACGCTCTTCGTGACTCTTTTCGTGATCGTGAGCCGCCAGTATGTG
ATCGGGAACTACCGGTGTGCGATCGGGAGCTATCGGTATGCGATCGGGAA
CTACCAGTGTGCGATCGGGAACTACCGTTGTGCGATCTGGAACTACCTGT
GTTCGAACGGGAGTTGCCAGTATGCGATCGGGAGTTTAAGGCATGTGATT
GTGAGCCACCAGTGTGCGACCGTGAATCGCCAGTATGAGATCGTGACGTT
CTGGTGTGTGAGCCTTTCTTTCTGGGCGATCGTTCGTTCTCTTTCGATGC
CGACTCGACAGCTTCGATCATGAAGATTGGCATTGAATCTACACCGTTGT
CAGATGGTTCACCTATTCGATGCGAGAAATTTTGATGTAGAGAATCAAAG
GAATGATGTGAATGGCCAGCAACGtcttttctttgaatttctttcatTCT
AGAAGAGCCTTTTGGTGACAACTCATTATCTTTTGCAACAGTTTTATTAT
CTTTGACCTTTTGAAGAATCAATGCACTCTTTTTCTTTAAACCATGAGTG
CTGTTCCCACTCTTTACATTTGAACGTGATTTCCCTATGACAATACTATT
AGGTGATAACAACATAGCACTCTGTTGTCCAGGCTTAACAGTATGATTAC
TAGGGCTCAAAGTAGCCGTGGAGTGAGTGCCGTGTTTATTAGGGTTCAAA
GTAGCCGTGGAGTGAGTGCCGTGTTTACTAGGGTTCAAAGTAGCCGTGGA
GTGAGTATTTTTACTCTTATGGTCGTCCATCTTATGTTGACTTTTAGGAG
AATGTTTCGATTTAGAATGCCTACTCAAAGAATCGTGAGAGGTGTGTGAT
CTATCATATTCTCTGATTCTGTGTGAATTTTTTGGACTGATCTCGTGACG
ATGTTTAGAATCTGCGGTGAGCACAACTGCCACATTACTCATGTCCGTGC
ACTGCACAATATCAGGTGAGCCATGTTCCACGATCAAACTTGAGGTATTG
GCTTCTGTCGTGCTAAATGCTGGCAATGCAGCAATGCTTTGGGATGCTTT
TTTTCCATCTGAACCTTGATGTAAACTTTTATGAGAACTGTCTTTTGaga
tttgatgaatttcagaTTCCTCATCAGTGACTTTTGACCGTGACTTTGTG
CCATGCCTTTTAAGTTCGTGAACTCTTCGTAGACTTTCCGGAGACGTTTT
CTTCGACTTGGATAATCCAGGAGTACTAGGTTCCGCACTCAAAGCGAGTG
AACTTTCGGTTACAATACCTTCGACTATTGGTACATTTTTAtgcgatttc
tttgttttcgaagATGCAGAGATTTCAGCATTCGAAACCAAGGAGATAGC
GCTGTCAATATCATGCCTCCGTGAGCTTTTGGGTgaagatttctttttca
ttgaagGTTCGCTAACTTCAGCATTCGAAGCCAGGGACATTGCATTATCA
ATATCATACCTCCGTGAACTTTTAGGTGAAGATTTCTTTTTTACTGAAGA
TCCAGAGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAACATCAT
GCCTCCGTGAACTTCTAGGTGAAGATTTCTTTTTCCTTGAAGACTCAGAA
ACTTCAGCATCATTTCGTTTAGACGTCGATTTTTTTCGCTTGAATTCTTC
AGGGACATCAAAAGAAATAGAAATGCAACTTTCGTCTGATAAGTTTTCTT
CTTCGCGTAGCGTTGTAGGAAGCTGTAGATCTTTGTTTCCAGTAAGCTTT
ACAATATCACTCTCCGTAAAGCCGATAGAACTTTTTTGTCCCGTTCTTCT
AGTAGAGCTACGAGTAGTACCTTTCCCGAATTCGCTTAGTTGATGTTCAT
TAGTGCTTTTTTTACGTTTATGATCTTTACGAGAGTCTTTCTTTTTCCCA
GTAGCACTACCTTCAGATAACAATTGAGCTGAGCTTTGTCCAGATATTTC
TGAAGAATGTTTGCTAGTATGACCGTCTTTATGTTTGCGATGACTGCGAT
GAGAATGTTCTTTTGTAGATTCCGTAGATTCAGCAGCTTCAAGTTTCCTT
TCGGCTGACTTTGACCTTAAACGGGAACCTTCTTTCTTTAGCTCTTCCAC
TCTACGAGGACTCTTTGGTgacgccattttgatttttgaggaagaTGGGA
TCGAAGCTACACCAGCAATAGCCTCGTCTTTATTGTTGCGTCTAGTGcta
ctttttgtttctttaattttaCTACGTGTACTTCCAACTTTAGAATGGAC
TTGAAGCACTCCTTCGTCAAGCACGGGGGCTGCTGAGTTTACCGCGTGAC
TTGATGCTCGTGAAAGCGAGACAGCGCTATTTCGCATGGTCTCTTCAGCC
GCCTCCATTGCACGCTTCGAACGGCGGATTTCCAGATCCTCGCGTTGTTT
TTGTAAGTCACTTCTCACACTTTTCAAGCGATTCAACGTGTCTTTAGAAC
CTTTACCAGTCATTGACGATTGTTGCTCAGGTTCTTCTGGGTTGGTGAAT
ATTTCAGGATACTGTTGACGAAGCTCGTGttgtttcttttgaattttctg
CTGATCTGTTTTGGATGATTTATTACGAGTTGGAGATTTAGAACGGTGTT
TCTTCGATTCTTCGCGCTCCAATGCTCTTTCAGACAAACCTTGCGTTTCT
TCTGCTACTTCTAGTTGATTTTGGATGTCTGTGAACGAGGTTTGAGTTGC
TATTTCCAGTTCGTGATGACTCGTTTGTGTTGAGTTTGTATGCTCTTTGA
CTCGAGTCTGTGTAGATGCACGATGCTGCTTCATCTTTGTTTGTGTGCTT
GAAGAGTTATACTCAGAATTGTCTGTCTGTGTAGCAGATTCAGCGTCTTC
TGAATGTTGTGTTTGTGTTCCAGTATTGGCCTCTTCTGATATTGGAGTTT
GAGTGGAAGCTTTATGTCCTTTGAAATTAACATTGAACTTGGTCTGTGTT
TTAGTCGAATGTTGTTTCAATTGATGTGTTTGTGTAGCGCTATCAACATC
TTCAGACACTGTAGTCTGTGTGGAGATGTTCGACTCTTCAGTCACGGTCT
GCGTAGATGTATCACATCCTGGGGATGTTGTGCTTTCACCCGTTAATGGG
TATTGTCGAAGAGAGCTAGAACAAATGCGGGAAATagtcggggaaacatt
ggaggATCGGTTTCTAGAGCTTGCAGTTTGATTAGAATTCAGAGTTGAGA
CTTCTAACTCTGAATCGGGTTTTACTTGTCTCATAGATGTATCGGGGATG
GGTAGACTACCATCTGGCATGGATTCCAAGCCAGGGCTTCCGGTAGATAC
TGCCACTGTCACAATAGTGCTCGGAGAATCTGCTCCCATAGCTTGCGGTA
GATACACATTGACGTGTGGAGCTTGGATTCTTTGAGCTTCAGTGATAAGT
TGTTGGTTGGTCATTTTGTTGGCTAGGTGTCTTTTCTGTAGTTCAGCAAC
ACGTTTTTGATGTTCCAATAAGCGTTGGTTGTATTCAAGATTCTGTTGAG
TCAACGGATTGGTTTGTTGTGAAGTTTGTTGATTGTTGGCAAGATTTTGT
TGAGAAGGCACAGTGATTCGAGGGAGTTGTTCCATATCTTCTGAGATTGT
CGTTTTTTCGGGTA Run BLAST on NCBI transcript from alignment at sc0000121:93370..98137- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011125 ID=TCONS_00011125|Name=TCONS_00011125|organism=Clytia hemisphaerica|type=transcript|length=4768bp|location=Sequence derived from alignment at sc0000121:93370..98137- (Clytia hemisphaerica)
CTGATTGAACGGGGCCACCAACCGACGCTGATACAGTGAAGTCAATAGAG
CTGTCATCTTTATCACTCCCTTTCGACAATTCTTTCTTGCTTTGGTACGG
ATCCAACGCTCTTCGTGACTCTTTTCGTGATCGTGAGCCGCCAGTATGTG
ATCGGGAACTACCGGTGTGCGATCGGGAGGTATGTGATCGGGAACTACCA
GTGTGCGATCGGGAACTACCAGTGTGCGATCGGGAACTACCGGTGTGCGA
TCGGGAACTACCGGTGTGCGATCGGGAACTACCTGTGTGNGTGCGATCGG
GAGCTATCGGTATGCGATCGGGAACTACCAGTGTGCGATCGGGAACTACC
GTTGTGCGATCTGGAACTACCTGTGTTCGAACGGGAGTTGCCAGTATGCG
ATCGGGAGTTTAAGGCATGTGATTGTGAGCCACCAGTGTGCGACCGTGAA
TCGCCAGTATGAGATCGTGACGTTCTGGTGTGTGAGCCTTTCTTTCTGGG
CGATCGTTCGTTCTCTTTCGATGCCGACTCGACAGCTTCGATCATGAAGA
TTGGCATTGAATCTACACCGTTGTCAGATGGTTCACCTATTCGATGCGAG
AAATTTTGATGTAGAGAATCAAAGGAATGATGTGAATGGCCAGCAACGTC
TTTTCTTTGAATTTCTTTCATTCTAGAAGAGCCTTTTGGTGACAACTCAT
TATCTTTTGCAACAGTTTTATTATCTTTGACCTTTTGAAGAATCAATGCA
CTCTTTTTCTTTAAACCATGAGTGCTGTTCCCACTCTTTACATTTGAACG
TGATTTCCCTATGACAATACTATTAGGTGATAACAACATAGCACTCTGTT
GTCCAGGCTTAACAGTATGATTACTAGGGCTCAAAGTAGCCGTGGAGTGA
GTGCCGTGTTTATTAGGGTTCAAAGTAGCCGTGGAGTGAGTGCCGTGTTT
ACTAGGGTTCAAAGTAGCCGTGGAGTGAGTATTTTTACTCTTATGGTCGT
CCATCTTATGTTGACTTTTAGGAGAATGTTTCGATTTAGAATGCCTACTC
AAAGAATCGTGAGAGGTGTGTGATCTATCATATTCTCTGATTCTGTGTGA
ATTTTTTGGACTGATCTCGTGACGATGTTTAGAATCTGCGGTGAGCACAA
CTGCCACATTACTCATGTCCGTGCACTGCACAATATCAGGTGAGCCATGT
TCCACGATCAAACTTGAGGTATTGGCTTCTGTCGTGCTAAATGCTGGCAA
TGCAGCAATGCTTTGGGATGCTTTTTTTCCATCTGAACCTTGATGTAAAC
TTTTATGAGAACTGTCTTTTGAGATTTGATGAATTTCAGATTCCTCATCA
GTGACTTTTGACCGTGACTTTGTGCCATGCCTTTTAAGTTCGTGAACTCT
TCGTAGACTTTCCGGAGACGTTTTCTTCGACTTGGATAATCCAGGAGTAC
TAGGTTCCGCACTCAAAGCGAGTGAACTTTCGGTTACAATACCTTCGACT
ATTGGTACATTTTTATGCGATTTCTTTGTTTTCGAAGATGCAGAGATTTC
AGCATTCGAAACCAAGGAGATAGCGCTGTCAATATCATGCCTCCGTGAGC
TTTTGGGTGAAGATTTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTC
GAAGCCAGGGACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGG
TGAAGATTTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTCGAAGCCA
AGGACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGAT
TTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTCGAAGCCAAGGACAT
AGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGATTTCTTTG
TCTTGGAAGGTCCAGGGATTTCAGCATTCGAAGCCAGGGACAAGGAGCTG
TCGATATCATGCCTCCGTGAGCTTTTGGGTGAAGATTTCTTTTTCGTTGA
AGGTTCGTTAACTTCAGCACTCGAAGTCAGGGACATAGCATTATCAATAT
CATGCCTCCGTGGACTTCTAGGTGAAGATTTCTTTTTTATTGAAGGTTCG
CTAACTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCT
TCGTGAGCTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTT
CAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGTGAA
CTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATT
CGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGG
GTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATTCGAAGCC
AAAGACATAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGGGTGAAGA
TTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATTCGAAGCCAAAGACA
TAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGGGTGAAGATTTCTTT
TTCATTGAAGGTTCGCTAACTTCAGGATTCGAAGCCAGGGACATTGCATT
ATCAATATCATACCTCCGTGAACTTTTAGGTGAAGATTTCTTTTTTACTG
AAGATCCAGAGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAACA
TCATGCCTCCGTGAACTTCTAGGTGAAGATTTCTTTTTCCTTGAAGACTC
AGAAACTTCAGCATCATTTCGTTTAGACGTCGATTTTTTTCGCTTGAATT
CTTCAGGGACATCAAAAGAAATAGAAATGCAACTTTCGTCTGATAAGTTT
TCTTCTTCGCGTAGCGTTGTAGGAAGCTGTAGATCTTTGTTTCCAGTAAG
CTTTACAATATCACTCTCCGTAAAGCCGATAGAACTTTTTTGTCCCGTTC
TTCTAGTAGAGCTACGAGTAGTACCTTTCCCGAATTCGCTTAGTTGATGT
TCATTAGTGCTTTTTTTACGTTTATGATCTTTACGAGAGTCTTTCTTTTT
CCCAGTAGCACTACCTTCAGATAACAATTGAGCTGAGCTTTGTCCAGATA
TTTCTGAAGAATGTTTGCTAGTATGACCGTCTTTATGTTTGCGATGACTG
CGATGAGAATGTTCTTTTGTAGATTCCGTAGATTCAGCAGCTTCAAGTTT
CCTTTCGGCTGACTTTGACCTTAAACGGGAACCTTCTTTCTTTAGCTCTT
CCACTCTACGAGGACTCTTTGGTGACGCCATTTTGATTTTTGAGGAAGAT
GGGATCGAAGCTACACCAGCAATAGCCTCGTCTTTATTGTTGCGTCTAGT
GCTACTTTTTGTTTCTTTAATTTTACTACGTGTACTTCCAACTTTAGAAT
GGACTTGAAGCACTCCTTCGTCAAGCACGGGGGCTGCTGAGTTTACCGCG
TGACTTGATGCTCGTGAAAGCGAGACAGCGCTATTTCGCATGGTCTCTTC
AGCCGCCTCCATTGCACGCTTCGAACGGCGGATTTCCAGATCCTCGCGTT
GTTTTTGTAAGTCACTTCTCACACTTTTCAAGCGATTCAACGTGTCTTTA
GAACCTTTACCAGTCATTGACGATTGTTGCTCAGGTTCTTCTGGGTTGGT
GAATATTTCAGGATACTGTTGACGAAGCTCGTGTTGTTTCTTTTGAATTT
TCTGCTGATCTGTTTTGGATGATTTATTACGAGTTGGAGATTTAGAACGG
TGTTTCTTCGATTCTTCGCGCTCCAATGCTCTTTCAGACAAACCTTGCGT
TTCTTCTGCTACTTCTAGTTGATTTTGGATGTCTGTGAACGAGGTTTGAG
TTGCTATTTCCAGTTCGTGATGACTCGTTTGTGTTGAGTTTGTATGCTCT
TTGACTCGAGTCTGTGTAGATGCACGATGCTGCTTCATCTTTGTTTGTGT
GCTTGAAGAGTTATACTCAGAATTGTCTGTCTGTGTAGCAGATTCAGCGT
CTTCTGAATGTTGTGTTTGTGTTCCAGTATTGGCCTCTTCTGATATTGGA
GTTTGAGTGGAAGCTTTATGTCCTTTGAAATTAACATTGAACTTGGTCTG
TGTTTTAGTCGAATGTTGTTTCAATTGATGTGTTTGTGTAGCGCTATCAA
CATCTTCAGACACTGTAGTCTGTGTGGAGATGTTCGACTCTTCAGTCACG
GTCTGCGTAGATGTATCACATCCTGGGGATGTTGTGCTTTCACCCGTTAA
TGGGTATTGTCGAAGAGAGCTAGAACAAATGCGGGAAATAGTCGGGGAAA
CATTGGAGGATCGGTTTCTAGAGCTTGCAGTTTGATTAGAATTCAGAGTT
GAGACTTCTAACTCTGAATCGGGTTTTACTTGTCTCATAGATGTATCGGG
GATGGGTAGACTACCATCTGGCATGGATTCCAAGCCAGGGCTTCCGGTAG
ATACTGCCACTGTCACAATAGTGCTCGGAGAATCTGCTCCCATAGCTTGC
GGTAGATACACATTGACGTGTGGAGCTTGGATTCTTTGAGCTTCAGTGAT
AAGTTGTTGGTTGGTCATTTTGTTGGCTAGGTGTCTTTTCTGTAGTTCAG
CAACACGTTTTTGATGTTCCAATAAGCGTTGGTTGTATTCAAGATTCTGT
TGAGTCAACGGATTGGTTTGTTGTGAAGTTTGTTGATTGTTGGCAAGATT
TTGTTGAGAAGGCACAGTGATTCGAGGGAGTTGTTCCATATCTTCTGAGA
TTGTCGTTTTTTCGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011125-exon-sc0000121-1575043694:97959..98137 | TCONS_00011125-exon-sc0000121-1575043694:97959..98137 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1575043694:96476..97834 | TCONS_00011125-exon-sc0000121-1575043694:96476..97834 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1575043694:93370..95545 | TCONS_00011125-exon-sc0000121-1575043694:93370..95545 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1510915933:97959..98137 | TCONS_00011125-exon-sc0000121-1510915933:97959..98137 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1510915933:96476..97834 | TCONS_00011125-exon-sc0000121-1510915933:96476..97834 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1510915933:93370..95545 | TCONS_00011125-exon-sc0000121-1510915933:93370..95545 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1491911889:97959..98137 | TCONS_00011125-exon-sc0000121-1491911889:97959..98137 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1491911889:96476..97834 | TCONS_00011125-exon-sc0000121-1491911889:96476..97834 | Clytia hemisphaerica | exon |
| TCONS_00011125-exon-sc0000121-1491911889:93370..95545 | TCONS_00011125-exon-sc0000121-1491911889:93370..95545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:93370..98137 - |
Blast
The following BLAST results are available for this feature:
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