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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=transcript|length=2039bp
GAGAGAAAGGACAACATGTAGGCGagagaaaaattttctcaaatcgcGCT
CGATTCATAACATAACATAAGAAAAAATCGTTTTGAGTGTAAAAAGCTAT
CAACATTGAGTTTTTATCACTTAGTTGACTACATCGTAAATAATTTACTT
GatcgtttttacttttttctttatttttcagttcAAAACTTATTACAGTG
AATCTTAAAAagaatatcaaaagaaaaggaGAATGTTGAGTTTACGGTCT
TTGGTATTCGTGTTTTGTTGCGCGCTAGTTTTCGGCGCCGTAGAAGATTC
TAAAGATGGCGTTGAATTTGAAGTTGGTGGAAAACCTGATCAAGCGAACA
TCAAAAGATTGTTTACCAAACTAAAAACTGTTCCAGCTTTCGATGATACT
GAGAGCTCTGGTGATTCTGATGATACTGAGAAAGGCTCTGGAGAAGAGGG
TGATTCTGAGGAAGGTTCCGGCTCTGGAAGCGGCGTCGGCGACGGTAACG
AGCCAAGCATTGTAGTTGTTCAAACAGTAGAACCAACTACTAAAGCCAAG
ACAACAAAGGCTATTGAAAAATCAACAGTCGTCGATATCAACGAAGTTAC
AACAGACGAACCTAAACAAAAAACAACCCAAGGAAACGACATTATCATCG
ATGCCGGCAAACCGACAATTCTTTACGGCGGAGATGAAGAAAACAACAAC
GTTGATGATGAATTACCAACAAGCcgtcaacaacaaaaacaacagaaGCA
AAACGACGAACCGACAGGAGTTAACTTCACTGTCGGAATTATTGTCGGTG
TTGTCGTAGGGGCTATCTTAGCTATCCTTGTTATTGTTTTCTTGGTATAC
AGGCTAAGGAAGAAAGATGAAGGGAGCTATTCTCTTGATGAACCCTCGTC
CCAGGCTTTTATAAGGGACGAAAAAAGTAACCCAGGACAAGGCAAAGAAT
ATTATGCGTAATTAATTTAAGACTCGGGATTCTTTGACGGAAACCGAATA
CTCTTTCTGATAAAGATGAGAGTATAACATGCATATATGGTGGGTTGGAT
ATGAAGGATAAATAGTAAGCTACCCGTTACGGTTTAGACACAATAAAATT
TTGTGAAGAAAAATTAATATAATGCATACAACACTCTTCCATGGATTTTA
GGTTTAGAGAGATATTATTTATATGAAAAAGTTGTATGGAATTTTCATAA
GAAGGTATTGGTAAAAGAAAAGGAGCAAAAAATGTACATAACTATTGACA
TGGTGTTAAATCGTATCTAGCGAGTGTACTTTATTGGTAAGCGGACCGCG
TGAACAAATGATATGtataaataagcaaaaaagaaCAAGTTCATCTACGG
TACATTTAAAACAAATAAGGCagtacaaaaaatcaagaaagatttttttc
aaaattgtaaattattattatatagAGGTTAGTTATCATTTTAGTATTCA
TTATAGTTTGAGACAAAGCAAAGTGgatatttgtttgaaaaaagtcatca
aaatatttacgaaaaatgtttaaattgtcattttttttacacgaaaaatt
aattaactgGGAAGTGTGTTTTCTCATGCcctcttgttttgttttttctt
tgacATATTTTGTCGATAAAACacaaagtttaatttttgaacttttttaa
taatattttttattttatctttttttttttgtctgtaaaataaacaacga
atcaaaatgacaattttttttattctaataCCGTTTATTTGTTGTCTTAC
ATGATGTCATGACCTATTaatgaaaaaagtattttcaagATGAATTTCAC
AACAAATACTTTGGTATAATTTTATGCAGTTCGATACATGCTGGTTAGGA
AGAAAAGATTCTCAAATCACTCATATCAGGCCAAAAAAAGCgataagaaa
ttttaaaaattttccattgtAAATAaactcagaaaatttttttgtctttg
ctaaaatattttttttgtattttttattaccCTATTCaacgattaaaaaa
aattagtaaataattgatcgttttgaaaatttccctttt Run BLAST on NCBI protein sequence of TCONS_00010938-protein >TCONS_00010938-protein ID=TCONS_00010938-protein|Name=TCONS_00010938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MLSLRSLVFVFCCALVFGAVEDSKDGVEFEVGGKPDQANIKRLFTKLKTV
PAFDDTESSGDSDDTEKGSGEEGDSEEGSGSGSGVGDGNEPSIVVVQTVE
PTTKAKTTKAIEKSTVVDINEVTTDEPKQKTTQGNDIIIDAGKPTILYGG
DEENNNVDDELPTSRQQQKQQKQNDEPTGVNFTVGIIVGVVVGAILAILV
IVFLVYRLRKKDEGSYSLDEPSSQAFIRDEKSNPGQGKEYYA Run BLAST on NCBI transcript from alignment at sc0000118:179401..181439 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=transcript|length=2039bp|location=Sequence derived from alignment at sc0000118:179401..181439 (Clytia hemisphaerica)
aaaagggaaattttcaaaacgatcaattatttactaattttttttaatcg
ttGAATAGggtaataaaaaatacaaaaaaaatattttagcaaagacaaaa
aaattttctgagttTATTTacaatggaaaatttttaaaatttcttatcGC
TTTTTTTGGCCTGATATGAGTGATTTGAGAATCTTTTCTTCCTAACCAGC
ATGTATCGAACTGCATAAAATTATACCAAAGTATTTGTTGTGAAATTCAT
cttgaaaatacttttttcattAATAGGTCATGACATCATGTAAGACAACA
AATAAACGGtattagaataaaaaaaattgtcattttgattcgttgtttat
tttacagacaaaaaaaaaaagataaaataaaaaatattattaaaaaagtt
caaaaattaaactttgtGTTTTATCGACAAAATATgtcaaagaaaaaaca
aaacaagaggGCATGAGAAAACACACTTCCcagttaattaatttttcgtg
taaaaaaaatgacaatttaaacatttttcgtaaatattttgatgactttt
ttcaaacaaatatcCACTTTGCTTTGTCTCAAACTATAATGAATACTAAA
ATGATAACTAACCTctatataataataatttacaattttgaaaaaaatct
ttcttgattttttgtactGCCTTATTTGTTTTAAATGTACCGTAGATGAA
CTTGttcttttttgcttatttataCATATCATTTGTTCACGCGGTCCGCT
TACCAATAAAGTACACTCGCTAGATACGATTTAACACCATGTCAATAGTT
ATGTACATTTTTTGCTCCTTTTCTTTTACCAATACCTTCTTATGAAAATT
CCATACAACTTTTTCATATAAATAATATCTCTCTAAACCTAAAATCCATG
GAAGAGTGTTGTATGCATTATATTAATTTTTCTTCACAAAATTTTATTGT
GTCTAAACCGTAACGGGTAGCTTACTATTTATCCTTCATATCCAACCCAC
CATATATGCATGTTATACTCTCATCTTTATCAGAAAGAGTATTCGGTTTC
CGTCAAAGAATCCCGAGTCTTAAATTAATTACGCATAATATTCTTTGCCT
TGTCCTGGGTTACTTTTTTCGTCCCTTATAAAAGCCTGGGACGAGGGTTC
ATCAAGAGAATAGCTCCCTTCATCTTTCTTCCTTAGCCTGTATACCAAGA
AAACAATAACAAGGATAGCTAAGATAGCCCCTACGACAACACCGACAATA
ATTCCGACAGTGAAGTTAACTCCTGTCGGTTCGTCGTTTTGCttctgttg
tttttgttgttgacgGCTTGTTGGTAATTCATCATCAACGTTGTTGTTTT
CTTCATCTCCGCCGTAAAGAATTGTCGGTTTGCCGGCATCGATGATAATG
TCGTTTCCTTGGGTTGTTTTTTGTTTAGGTTCGTCTGTTGTAACTTCGTT
GATATCGACGACTGTTGATTTTTCAATAGCCTTTGTTGTCTTGGCTTTAG
TAGTTGGTTCTACTGTTTGAACAACTACAATGCTTGGCTCGTTACCGTCG
CCGACGCCGCTTCCAGAGCCGGAACCTTCCTCAGAATCACCCTCTTCTCC
AGAGCCTTTCTCAGTATCATCAGAATCACCAGAGCTCTCAGTATCATCGA
AAGCTGGAACAGTTTTTAGTTTGGTAAACAATCTTTTGATGTTCGCTTGA
TCAGGTTTTCCACCAACTTCAAATTCAACGCCATCTTTAGAATCTTCTAC
GGCGCCGAAAACTAGCGCGCAACAAAACACGAATACCAAAGACCGTAAAC
TCAACATTCtccttttcttttgatattctTTTTAAGATTCACTGTAATAA
GTTTTgaactgaaaaataaagaaaaaagtaaaaacgatCAAGTAAATTAT
TTACGATGTAGTCAACTAAGTGATAAAAACTCAATGTTGATAGCTTTTTA
CACTCAAAACGATTTTTTCTTATGTTATGTTATGAATCGAGCgcgatttg
agaaaatttttctctCGCCTACATGTTGTCCTTTCTCTC Coding sequence (CDS) from alignment at sc0000118:179401..181439 >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000118:179401..181439 (Clytia hemisphaerica)
TTACGCATAATATTCTTTGCCTTGTCCTGGGTTACTTTTTTCGTCCCTTA
TAAAAGCCTGGGACGAGGGTTCATCAAGAGAATAGCTCCCTTCATCTTTC
TTCCTTAGCCTGTATACCAAGAAAACAATAACAAGGATAGCTAAGATAGC
CCCTACGACAACACCGACAATAATTCCGACAGTGAAGTTAACTCCTGTCG
GTTCGTCGTTTTGCttctgttgtttttgttgttgacgGCTTGTTGGTAAT
TCATCATCAACGTTGTTGTTTTCTTCATCTCCGCCGTAAAGAATTGTCGG
TTTGCCGGCATCGATGATAATGTCGTTTCCTTGGGTTGTTTTTTGTTTAG
GTTCGTCTGTTGTAACTTCGTTGATATCGACGACTGTTGATTTTTCAATA
GCCTTTGTTGTCTTGGCTTTAGTAGTTGGTTCTACTGTTTGAACAACTAC
AATGCTTGGCTCGTTACCGTCGCCGACGCCGCTTCCAGAGCCGGAACCTT
CCTCAGAATCACCCTCTTCTCCAGAGCCTTTCTCAGTATCATCAGAATCA
CCAGAGCTCTCAGTATCATCGAAAGCTGGAACAGTTTTTAGTTTGGTAAA
CAATCTTTTGATGTTCGCTTGATCAGGTTTTCCACCAACTTCAAATTCAA
CGCCATCTTTAGAATCTTCTACGGCGCCGAAAACTAGCGCGCAACAAAAC
ACGAATACCAAAGACCGTAAACTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010938-exon-sc0000118-1491911889:179401..181439 | TCONS_00010938-exon-sc0000118-1491911889:179401..181439 | Clytia hemisphaerica | exon |
| TCONS_00010938-exon-sc0000118-1510915933:179401..181439 | TCONS_00010938-exon-sc0000118-1510915933:179401..181439 | Clytia hemisphaerica | exon |
| TCONS_00010938-exon-sc0000118-1575043694:179401..181439 | TCONS_00010938-exon-sc0000118-1575043694:179401..181439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:179401..181439 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027789 | Syndecan/Neurexin_dom |
Blast
The following BLAST results are available for this feature:
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