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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=transcript|length=2039bp GAGAGAAAGGACAACATGTAGGCGagagaaaaattttctcaaatcgcGCT CGATTCATAACATAACATAAGAAAAAATCGTTTTGAGTGTAAAAAGCTAT CAACATTGAGTTTTTATCACTTAGTTGACTACATCGTAAATAATTTACTT GatcgtttttacttttttctttatttttcagttcAAAACTTATTACAGTG AATCTTAAAAagaatatcaaaagaaaaggaGAATGTTGAGTTTACGGTCT TTGGTATTCGTGTTTTGTTGCGCGCTAGTTTTCGGCGCCGTAGAAGATTC TAAAGATGGCGTTGAATTTGAAGTTGGTGGAAAACCTGATCAAGCGAACA TCAAAAGATTGTTTACCAAACTAAAAACTGTTCCAGCTTTCGATGATACT GAGAGCTCTGGTGATTCTGATGATACTGAGAAAGGCTCTGGAGAAGAGGG TGATTCTGAGGAAGGTTCCGGCTCTGGAAGCGGCGTCGGCGACGGTAACG AGCCAAGCATTGTAGTTGTTCAAACAGTAGAACCAACTACTAAAGCCAAG ACAACAAAGGCTATTGAAAAATCAACAGTCGTCGATATCAACGAAGTTAC AACAGACGAACCTAAACAAAAAACAACCCAAGGAAACGACATTATCATCG ATGCCGGCAAACCGACAATTCTTTACGGCGGAGATGAAGAAAACAACAAC GTTGATGATGAATTACCAACAAGCcgtcaacaacaaaaacaacagaaGCA AAACGACGAACCGACAGGAGTTAACTTCACTGTCGGAATTATTGTCGGTG TTGTCGTAGGGGCTATCTTAGCTATCCTTGTTATTGTTTTCTTGGTATAC AGGCTAAGGAAGAAAGATGAAGGGAGCTATTCTCTTGATGAACCCTCGTC CCAGGCTTTTATAAGGGACGAAAAAAGTAACCCAGGACAAGGCAAAGAAT ATTATGCGTAATTAATTTAAGACTCGGGATTCTTTGACGGAAACCGAATA CTCTTTCTGATAAAGATGAGAGTATAACATGCATATATGGTGGGTTGGAT ATGAAGGATAAATAGTAAGCTACCCGTTACGGTTTAGACACAATAAAATT TTGTGAAGAAAAATTAATATAATGCATACAACACTCTTCCATGGATTTTA GGTTTAGAGAGATATTATTTATATGAAAAAGTTGTATGGAATTTTCATAA GAAGGTATTGGTAAAAGAAAAGGAGCAAAAAATGTACATAACTATTGACA TGGTGTTAAATCGTATCTAGCGAGTGTACTTTATTGGTAAGCGGACCGCG TGAACAAATGATATGtataaataagcaaaaaagaaCAAGTTCATCTACGG TACATTTAAAACAAATAAGGCagtacaaaaaatcaagaaagatttttttc aaaattgtaaattattattatatagAGGTTAGTTATCATTTTAGTATTCA TTATAGTTTGAGACAAAGCAAAGTGgatatttgtttgaaaaaagtcatca aaatatttacgaaaaatgtttaaattgtcattttttttacacgaaaaatt aattaactgGGAAGTGTGTTTTCTCATGCcctcttgttttgttttttctt tgacATATTTTGTCGATAAAACacaaagtttaatttttgaacttttttaa taatattttttattttatctttttttttttgtctgtaaaataaacaacga atcaaaatgacaattttttttattctaataCCGTTTATTTGTTGTCTTAC ATGATGTCATGACCTATTaatgaaaaaagtattttcaagATGAATTTCAC AACAAATACTTTGGTATAATTTTATGCAGTTCGATACATGCTGGTTAGGA AGAAAAGATTCTCAAATCACTCATATCAGGCCAAAAAAAGCgataagaaa ttttaaaaattttccattgtAAATAaactcagaaaatttttttgtctttg ctaaaatattttttttgtattttttattaccCTATTCaacgattaaaaaa aattagtaaataattgatcgttttgaaaatttccctttt Run BLAST on NCBI protein sequence of TCONS_00010938-protein >TCONS_00010938-protein ID=TCONS_00010938-protein|Name=TCONS_00010938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MLSLRSLVFVFCCALVFGAVEDSKDGVEFEVGGKPDQANIKRLFTKLKTV PAFDDTESSGDSDDTEKGSGEEGDSEEGSGSGSGVGDGNEPSIVVVQTVE PTTKAKTTKAIEKSTVVDINEVTTDEPKQKTTQGNDIIIDAGKPTILYGG DEENNNVDDELPTSRQQQKQQKQNDEPTGVNFTVGIIVGVVVGAILAILV IVFLVYRLRKKDEGSYSLDEPSSQAFIRDEKSNPGQGKEYYA Run BLAST on NCBI transcript from alignment at sc0000118:179401..181439 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=transcript|length=2039bp|location=Sequence derived from alignment at sc0000118:179401..181439 (Clytia hemisphaerica) aaaagggaaattttcaaaacgatcaattatttactaattttttttaatcg
ttGAATAGggtaataaaaaatacaaaaaaaatattttagcaaagacaaaa
aaattttctgagttTATTTacaatggaaaatttttaaaatttcttatcGC
TTTTTTTGGCCTGATATGAGTGATTTGAGAATCTTTTCTTCCTAACCAGC
ATGTATCGAACTGCATAAAATTATACCAAAGTATTTGTTGTGAAATTCAT
cttgaaaatacttttttcattAATAGGTCATGACATCATGTAAGACAACA
AATAAACGGtattagaataaaaaaaattgtcattttgattcgttgtttat
tttacagacaaaaaaaaaaagataaaataaaaaatattattaaaaaagtt
caaaaattaaactttgtGTTTTATCGACAAAATATgtcaaagaaaaaaca
aaacaagaggGCATGAGAAAACACACTTCCcagttaattaatttttcgtg
taaaaaaaatgacaatttaaacatttttcgtaaatattttgatgactttt
ttcaaacaaatatcCACTTTGCTTTGTCTCAAACTATAATGAATACTAAA
ATGATAACTAACCTctatataataataatttacaattttgaaaaaaatct
ttcttgattttttgtactGCCTTATTTGTTTTAAATGTACCGTAGATGAA
CTTGttcttttttgcttatttataCATATCATTTGTTCACGCGGTCCGCT
TACCAATAAAGTACACTCGCTAGATACGATTTAACACCATGTCAATAGTT
ATGTACATTTTTTGCTCCTTTTCTTTTACCAATACCTTCTTATGAAAATT
CCATACAACTTTTTCATATAAATAATATCTCTCTAAACCTAAAATCCATG
GAAGAGTGTTGTATGCATTATATTAATTTTTCTTCACAAAATTTTATTGT
GTCTAAACCGTAACGGGTAGCTTACTATTTATCCTTCATATCCAACCCAC
CATATATGCATGTTATACTCTCATCTTTATCAGAAAGAGTATTCGGTTTC
CGTCAAAGAATCCCGAGTCTTAAATTAATTACGCATAATATTCTTTGCCT
TGTCCTGGGTTACTTTTTTCGTCCCTTATAAAAGCCTGGGACGAGGGTTC
ATCAAGAGAATAGCTCCCTTCATCTTTCTTCCTTAGCCTGTATACCAAGA
AAACAATAACAAGGATAGCTAAGATAGCCCCTACGACAACACCGACAATA
ATTCCGACAGTGAAGTTAACTCCTGTCGGTTCGTCGTTTTGCttctgttg
tttttgttgttgacgGCTTGTTGGTAATTCATCATCAACGTTGTTGTTTT
CTTCATCTCCGCCGTAAAGAATTGTCGGTTTGCCGGCATCGATGATAATG
TCGTTTCCTTGGGTTGTTTTTTGTTTAGGTTCGTCTGTTGTAACTTCGTT
GATATCGACGACTGTTGATTTTTCAATAGCCTTTGTTGTCTTGGCTTTAG
TAGTTGGTTCTACTGTTTGAACAACTACAATGCTTGGCTCGTTACCGTCG
CCGACGCCGCTTCCAGAGCCGGAACCTTCCTCAGAATCACCCTCTTCTCC
AGAGCCTTTCTCAGTATCATCAGAATCACCAGAGCTCTCAGTATCATCGA
AAGCTGGAACAGTTTTTAGTTTGGTAAACAATCTTTTGATGTTCGCTTGA
TCAGGTTTTCCACCAACTTCAAATTCAACGCCATCTTTAGAATCTTCTAC
GGCGCCGAAAACTAGCGCGCAACAAAACACGAATACCAAAGACCGTAAAC
TCAACATTCtccttttcttttgatattctTTTTAAGATTCACTGTAATAA
GTTTTgaactgaaaaataaagaaaaaagtaaaaacgatCAAGTAAATTAT
TTACGATGTAGTCAACTAAGTGATAAAAACTCAATGTTGATAGCTTTTTA
CACTCAAAACGATTTTTTCTTATGTTATGTTATGAATCGAGCgcgatttg
agaaaatttttctctCGCCTACATGTTGTCCTTTCTCTC Coding sequence (CDS) from alignment at sc0000118:179401..181439 >TCONS_00010938 ID=TCONS_00010938|Name=TCONS_00010938|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000118:179401..181439 (Clytia hemisphaerica) TTACGCATAATATTCTTTGCCTTGTCCTGGGTTACTTTTTTCGTCCCTTA TAAAAGCCTGGGACGAGGGTTCATCAAGAGAATAGCTCCCTTCATCTTTC TTCCTTAGCCTGTATACCAAGAAAACAATAACAAGGATAGCTAAGATAGC CCCTACGACAACACCGACAATAATTCCGACAGTGAAGTTAACTCCTGTCG GTTCGTCGTTTTGCttctgttgtttttgttgttgacgGCTTGTTGGTAAT TCATCATCAACGTTGTTGTTTTCTTCATCTCCGCCGTAAAGAATTGTCGG TTTGCCGGCATCGATGATAATGTCGTTTCCTTGGGTTGTTTTTTGTTTAG GTTCGTCTGTTGTAACTTCGTTGATATCGACGACTGTTGATTTTTCAATA GCCTTTGTTGTCTTGGCTTTAGTAGTTGGTTCTACTGTTTGAACAACTAC AATGCTTGGCTCGTTACCGTCGCCGACGCCGCTTCCAGAGCCGGAACCTT CCTCAGAATCACCCTCTTCTCCAGAGCCTTTCTCAGTATCATCAGAATCA CCAGAGCTCTCAGTATCATCGAAAGCTGGAACAGTTTTTAGTTTGGTAAA CAATCTTTTGATGTTCGCTTGATCAGGTTTTCCACCAACTTCAAATTCAA CGCCATCTTTAGAATCTTCTACGGCGCCGAAAACTAGCGCGCAACAAAAC ACGAATACCAAAGACCGTAAACTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010938-exon-sc0000118-1491911889:179401..181439 | TCONS_00010938-exon-sc0000118-1491911889:179401..181439 | Clytia hemisphaerica | exon |
TCONS_00010938-exon-sc0000118-1510915933:179401..181439 | TCONS_00010938-exon-sc0000118-1510915933:179401..181439 | Clytia hemisphaerica | exon |
TCONS_00010938-exon-sc0000118-1575043694:179401..181439 | TCONS_00010938-exon-sc0000118-1575043694:179401..181439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000118 | supercontig | sc0000118:179401..181439 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR027789 | Syndecan/Neurexin_dom |
Blast
The following BLAST results are available for this feature:
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