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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010917 ID=TCONS_00010917|Name=TCONS_00010917|organism=Clytia hemisphaerica|type=transcript|length=4029bpRun BLAST on NCBI protein sequence of TCONS_00010917-protein >TCONS_00010917-protein ID=TCONS_00010917-protein|Name=TCONS_00010917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp MNCTTNMVSLTATSFSDSFNEYNQIRQSSLLSRSFIHEEENPPTTEKTNRRun BLAST on NCBI transcript from alignment at sc0000118:291836..330239- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010917 ID=TCONS_00010917|Name=TCONS_00010917|organism=Clytia hemisphaerica|type=transcript|length=38404bp|location=Sequence derived from alignment at sc0000118:291836..330239- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:291836..330239- >TCONS_00010917 ID=TCONS_00010917|Name=TCONS_00010917|organism=Clytia hemisphaerica|type=CDS|length=10878bp|location=Sequence derived from alignment at sc0000118:291836..330239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010917 vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.645e-40 Identity = 131/433 (30.25%), Postives = 224/433 (51.73%), Query Frame = 3
Query: 1407 IEPVTFFYACALILHAPLIQQYIYHRLSEDFGLPSNIKVDKSSCNVDTESETDLSIIDKRKQVQSMTSYIYLGIILAAALPSFFMALLLGSWSDKVGRKXXXXXXXXXXXXDSVCILITMATRGSLYLLFIGSFCNGVCGFFTTMILAVFSYMADTTTEEERALRLGIVEAVAFTSGMISHISSGWWIQHLGFKAPYIFITTLHLISLTYIITYLPESSTVQLSPKRIADLFHYSHFQKIFIVF--KESSESIQLYGLLVTSAFLMLASIGFGS--VIVLYSLDAPFCLSPILIGYFLADCMFMQALGAIFALTCLQKVLSEIWLTQMGXXXXXXXXXXXXXXXKKWHMFIVPIVGCFGGVCMPVIRARMSKLVSADHQGALFSAVATLETLCTLLGAGIFNSLYPYTEKTFKFRGLCFLLMATILIVPALIL 2693
+EP+ F AL+L PL QY++HR S D G N + C+ + T ++V+++TS+ L + + L F + LLG+WSD VGR+ +++L +G LL ++ + + + + +G + G F ++ A F+ +AD ++ R R+ ++EA +GM++ + G W++ G+ P+ L LI++T + + + R+ H+ ++++ ++S + + LY L A ++ ++ FG+ ++ LY L P C LIGY A + L ++ AL LQ L++ W+ ++G+A I ++ AF T MF + V PVIRA++SKLV QGALFSAVA + +L L +GIFNSLYP T K G FLL A +L++PA+++
Sbjct: 25 VEPLVFLANFALVLQGPLTTQYLWHRFSADLGY--NGTRQRGGCSNRSADPT-------MQEVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALAL-LIAMTLYAAFCFGETLKEPKSTRLFTFRHHRSIVQLYVAPAPEKSRKHLALYSL----AIFVVITVHFGAQDILTLYELSTPLCWDSKLIGYGSA-AQHLPYLTSLLALKLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFMK--GFPFLLGAGLLLIPAVLI 440 The following BLAST results are available for this feature:
BLAST of TCONS_00010917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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