TCONS_00010917-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010917-protein
Unique Name	TCONS_00010917-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	517

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010917-protein ID=TCONS_00010917-protein|Name=TCONS_00010917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MNCTTNMVSLTATSFSDSFNEYNQIRQSSLLSRSFIHEEENPPTTEKTNR
RKTTRQVAKQIFKSITIEPVTFFYACALILHAPLIQQYIYHRLSEDFGLP
SNIKVDKSSCNVDTESETDLSIIDKRKQVQSMTSYIYLGIILAAALPSFF
MALLLGSWSDKVGRKIIILLPVIGGLLDSVCILITMATRGSLYLLFIGSF
CNGVCGFFTTMILAVFSYMADTTTEEERALRLGIVEAVAFTSGMISHISS
GWWIQHLGFKAPYIFITTLHLISLTYIITYLPESSTVQLSPKRIADLFHY
SHFQKIFIVFKESSESIQLYGLLVTSAFLMLASIGFGSVIVLYSLDAPFC
LSPILIGYFLADCMFMQALGAIFALTCLQKVLSEIWLTQMGIASIISSLI
TIAFITKKWHMFIVPIVGCFGGVCMPVIRARMSKLVSADHQGALFSAVAT
LETLCTLLGAGIFNSLYPYTEKTFKFRGLCFLLMATILIVPALILCFISF
QENSQKRLHNKLNTTLK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006130	XLOC_006130	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010917	TCONS_00010917	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001958	Tet-R_TetA/multi-R_MdtG
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001958	Tetracycline resistance protein TetA/multidrug resistance protein MdtG	PRINTS	PR01035	TCRTETA	coord: 137..156 score: 30.5 coord: 444..467 score: 25.42 coord: 261..281 score: 18.1 coord: 409..429 score: 28.57
None	No IPR available	GENE3D	1.20.1250.20		coord: 38..302 e-value: 4.4E-21 score: 74.6
None	No IPR available	GENE3D	1.20.1250.20		coord: 303..504 e-value: 5.6E-9 score: 35.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 94..460 e-value: 1.1E-21 score: 77.1
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 61..503 score: 9.548
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 140..498 e-value: 1.12175E-13 score: 70.0353
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 137..506

Blast

[Close]

BLAST of TCONS_00010917-protein vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.447e-47
Identity = 137/459 (29.85%), Postives = 232/459 (50.54%), Query Frame = 0

Query:   41 NPPTTEKTNRRKTTRQVAKQIFKSITIEPVTFFYACALILHAPLIQQYIYHRLSEDFGLPSNIKVDKSSCNVDTESETDLSIIDKRKQVQSMTSYIYLGIILAAALPSFFMALLLGSWSDKVGRKIIILLPVIGGLLDSVCILITMATRGSLYLLFIGSFCNGVCGFFTTMILAVFSYMADTTTEEERALRLGIVEAVAFTSGMISHISSGWWIQHLGFKAPYIFITTLHLISLTYIITYLPESSTVQLSPKRIADLFHYSHFQKIFI--VFKESSESIQLYGLLVTSAFLMLASIGFGS--VIVLYSLDAPFCLSPILIGYFLADCMFMQALGAIFALTCLQKVLSEIWLTQMGIASIISSLITIAFITKKWHMFIVPIVGCFGGVCMPVIRARMSKLVSADHQGALFSAVATLETLCTLLGAGIFNSLYPYTEKTFKFRGLCFLLMATILIVPALIL 495
            +PP  EK   R      A  +     +EP+ F    AL+L  PL  QY++HR S D G   N    +  C+  +   T        ++V+++TS+  L + +   L   F + LLG+WSD VGR+ +++L  +G LL ++  +  +  +  +    +G     + G F  ++ A F+ +AD ++   R  R+ ++EA    +GM++ +  G W++  G+  P+     L LI++T    +    +  +    R+    H+    ++++    ++S + + LY L    A  ++ ++ FG+  ++ LY L  P C    LIGY  A    +  L ++ AL  LQ  L++ W+ ++G+A  I  ++  AF T    MF    +     V  PVIRA++SKLV    QGALFSAVA + +L  L  +GIFNSLYP T    K  G  FLL A +L++PA+++
Sbjct:    6 SPP--EKPRARP-----AAAVLCRGPVEPLVFLANFALVLQGPLTTQYLWHRFSADLGY--NGTRQRGGCSNRSADPT-------MQEVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALAL-LIAMTLYAAFCFGETLKEPKSTRLFTFRHHRSIVQLYVAPAPEKSRKHLALYSL----AIFVVITVHFGAQDILTLYELSTPLCWDSKLIGYGSA-AQHLPYLTSLLALKLLQYCLADAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFMK--GFPFLLGAGLLLIPAVLI 440

The following BLAST results are available for this feature:

BLAST of TCONS_00010917-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCFT	6.447e-47	29.85	Proton-coupled folate transporter OS=Homo sapiens ...	[more]

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TCONS_00010917-protein (polypeptide) - C. hemisphaerica