TCONS_00010770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010770
Unique NameTCONS_00010770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010770 ID=TCONS_00010770|Name=TCONS_00010770|organism=Clytia hemisphaerica|type=transcript|length=318bp
TCCGTCGACATGGTTATCCGGCAAGAGATTTATTCAACTTGAACGAACAT
TGTTATGATTCAAATCTTGTAGTGAAGCCCCAGAAAAGATCAGCTGTAGC
CTGGTATAACCATCATGTTGATGCGAACACAGGCTGGTTGGGCGAAATTG
ACGATTGGTCTTTGCATGGTGGTTGTGAGGTGCGCAAAGGTGAAAAATGG
ATTGCTAATTTATGGTTAACAGCTCCTTATGCTGGCGAAGAAATGAAACT
GAGTATGTATTCGGCAGAATATATGGAAATGATGAGAGATAGAGGTGAAG
ATTTGTATTAAATGGACT
Run BLAST on NCBI

protein sequence of TCONS_00010770-protein

>TCONS_00010770-protein ID=TCONS_00010770-protein|Name=TCONS_00010770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
RRHGYPARDLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEID
DWSLHGGCEVRKGEKWIANLWLTAPYAGEEMKLSMYSAEYMEMMRDRGED
LY
Run BLAST on NCBI

transcript from alignment at sc0000109:577982..578299

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010770 ID=TCONS_00010770|Name=TCONS_00010770|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at sc0000109:577982..578299 (Clytia hemisphaerica)
AGTCCATTTAATACAAATCTTCACCTCTATCTCTCATCATTTCCATATAT
TCTGCCGAATACATACTCAGTTTCATTTCTTCGCCAGCATAAGGAGCTGT
TAACCATAAATTAGCAATCCATTTTTCACCTTTGCGCACCTCACAACCAC
CATGCAAAGACCAATCGTCAATTTCGCCCAACCAGCCTGTGTTCGCATCA
ACATGATGGTTATACCAGGCTACAGCTGATCTTTTCTGGGGCTTCACTAC
AAGATTTGAATCATAACAATGTTCGTTCAAGTTGAATAAATCTCTTGCCG
GATAACCATGTCGACGGA

Coding sequence (CDS) from alignment at sc0000109:577982..578299

>TCONS_00010770 ID=TCONS_00010770|Name=TCONS_00010770|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000109:577982..578299 (Clytia hemisphaerica)
TTAATACAAATCTTCACCTCTATCTCTCATCATTTCCATATATTCTGCCG
AATACATACTCAGTTTCATTTCTTCGCCAGCATAAGGAGCTGTTAACCAT
AAATTAGCAATCCATTTTTCACCTTTGCGCACCTCACAACCACCATGCAA
AGACCAATCGTCAATTTCGCCCAACCAGCCTGTGTTCGCATCAACATGAT
GGTTATACCAGGCTACAGCTGATCTTTTCTGGGGCTTCACTACAAGATTT
GAATCATAACAATGTTCGTTCAAGTTGAATAAATCTCTTGCCGGATAACC
ATGTCGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006044XLOC_006044Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010770-proteinTCONS_00010770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010770-exon-sc0000109-1491911889:577982..578299TCONS_00010770-exon-sc0000109-1491911889:577982..578299Clytia hemisphaericaexon
TCONS_00010770-exon-sc0000109-1510915933:577982..578299TCONS_00010770-exon-sc0000109-1510915933:577982..578299Clytia hemisphaericaexon
TCONS_00010770-exon-sc0000109-1575043694:577982..578299TCONS_00010770-exon-sc0000109-1575043694:577982..578299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:577982..578299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325432	0	0	0	0.877727	1.73398	10.3429	5.48374	3.64685	1.89818	6.87918	5.36092	3.4633	5.77895	6.96183	9.46068	5.47857	5.89513	5.57941	5.33546	1.56384	4.34218	4.06983	1.43295	3.84342	6.01735	0.597537	0	0.361204	0
Blast
[Close]
BLAST of TCONS_00010770 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.494e-18
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 3 
Query:   27 DLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHGGCEVRKGEKWIANLWLTAPYAGEEMKLSMYSAEYMEMMRDRGED 302
            DL +   HC   NL VKPQ+ +AV WYN+  D   GW+G++DD+SLHGGC V +G KWIAN W+    +    + +++  E   + R+ G D
Sbjct:  396 DLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQ-GWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPS--RARQALFQQEMARLAREGGTD 484
The following BLAST results are available for this feature:
BLAST of TCONS_00010770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HTM1.494e-1842.39Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]
back to top