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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010722 ID=TCONS_00010722|Name=TCONS_00010722|organism=Clytia hemisphaerica|type=transcript|length=1348bp CAACTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTA GAGCTGCATTTACAGCGCTCAAAGGGTTAGGATATTTCAACACAGATATG GTTTATACTGCAGCCACCTTTACAAACACTGGCAAGAAACGGTCCAGTGT TAGTGGTGAACCAGACAACTCTGCAGCAACAAAGAAAATGTGTTTCGAGA AAAACTCAAAGTCGTTCAAAAGCCGACTTAACGAACTAGCGCAACAGAAC AAGTTGCAGCAACCAACGTATGAGACGATTAGCACGACAAATGGATTTTT CACAACAGTCACTTTCAACGGGCGGCAATTCAAGAGTGCATCGTGTATGA GTAAGAAGAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTC TTGACCAGCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGA TGaTGTTGCAGATATGATCAAAAGTGCTCGCGTAGGTTCAAACGTCATGA ATTTATCCTTGAAAAATCGTTTACAAGAGTATTGCCAACGTTTGAAGAAA GAACTACCCACCTATAAATCTGAATTGGGAGATAATGGTTTCTTTATGAC CGTCTGTACCGTTGATGAGATCGCCTACGAAGGTGGACCGGCCAAAACGC GAAAAGAAGCAGAGAAAAATGCAGCGGAGGCAGCTCTTAAAGAACTCGGG TTAATGGCTGTTCGAGAACAATAAATAGAGAATGGGTGACTACATTTCAG GGATAGGATATGGAGAATTTTTAAACGGTGAACGGGTCGAAGCGGAGCAC GACCGGCAgtgtgttttcaaaaatatactttatATCAGAAACTATGACAG CGTTATCGGACATGACTTTCAGTTATACATACAATTACTTTGATGATGTG TATTTGATAAAGTGTACAGTTTACTGATTTGAACAATATCCGCCAGATTT CATTTTCCATGATGGTTTTTATTTGATGTATCTGATAtacggggaaaatt ttcgtcggggaaaagtgacgaaattttggccaagtgacgaatatttttcc ccgacgaaagtTTTCGCTGGCCTTAATGCgcttaccaactaccagcaagt gacgaatatttttcctcgacgtaaattttccccgacgaaaattttccccg acgaaattttccccgataaggtatgtgcTGAAATATGATAAATGTAAATG TTATTCATAATGTATAAAGTTCACGATTCTTTATGACAAAACATTTTATT TCGATGCgattttattttccattttatgagtagagtattattttttttaa aggttttaaatagAACATGACATGATTATAAtcaaaagtctaaaaata Run BLAST on NCBI protein sequence of Putative dsRNA binding protein >TCONS_00010722-protein ID=TCONS_00010722-protein|Name=Putative dsRNA binding protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
NFTAEAATDTPKDADLRAAFTALKGLGYFNTDMVYTAATFTNTGKKRSSV SGEPDNSAATKKMCFEKNSKSFKSRLNELAQQNKLQQPTYETISTTNGFF TTVTFNGRQFKSASCMSKKKDSEQNASEVALTFLTSGQQANGEQNGKTAD DVADMIKSARVGSNVMNLSLKNRLQEYCQRLKKELPTYKSELGDNGFFMT VCTVDEIAYEGGPAKTRKEAEKNAAEAALKELGLMAVREQ Run BLAST on NCBI transcript from alignment at sc0000109:518248..525301+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010722 ID=TCONS_00010722|Name=TCONS_00010722|organism=Clytia hemisphaerica|type=transcript|length=7054bp|location=Sequence derived from alignment at sc0000109:518248..525301+ (Clytia hemisphaerica) CAACTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTA
GAGCTGCATTTACAGCGCTCAAAGGGTTAGGATATTTCAACACAGATATG
GTTTATACTGCAGCCACCTTTACAAACACTGGTAAGAAGAAAATATCAAA
GTCTAAGTATATTTGACTTAACATAACATCTAGTGTGGCTCCGCATCAAT
AACGGGGTTGTATTTTCCGAAAATGATTGCGATGGTGTCGTCATTGGAAA
AAAGATATGTGTGAATATAAAGAAATCTATAAGAACttgaaaatgatgaa
gaaaaCTGAATTTCAActtaaagtaaaaagtaaagtaAAATTATGAAAGA
GCACCCCACTCAAGAAACTTAAAAGAGATTAATAAAGTTAAATCAAATTA
AAGTTCCTTGCCCCAATCTAATACTATTAAAGATGAAAATATTCATGTTT
GCAGGCAAGAAACGGTCCAGTGTTAGTGGTGAACCAGACAACTCTGCAGC
AACAAAGAAAATGTGTTTCGAGAAAAACTCAAAGTCGTTCAAAAGCCGAC
TTAACGAACTAGCGCAACAGAACAAGTTGCAGCAACCAACGTATGAGACG
ATTAGCACGACAAATGGATTTTTCACAACAGTCACTTTCAACGGGCGGCA
ATTCAAGGTAAAAACCGTTTTGAAACTACTGCTAGTATTTATCCAAACTA
TTAAGGTTGAGGCCTTGGAGCTAGAAATTCTATCTAtgaggcttttccag
aaaaaatctgaatatgagcagggtggaggatataactttttttggaaatg
tatggacattgtgacttttgaccccccccccNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNcccggaccttattaggacccccc
cccgtttattaatttttgaaaaaaattcccagctaccaaaaagaaagttc
cttgttttactctaaaaaacctaaatttagtctattttgaccctttttag
ggtttttaaggTCCactttccaaccccccccgtttatttggcacctaaga
gtacaaaccttaaggcttcactttttcttacttgggaaaggttgaagatt
caaaTCTTGCTCTTCGAGCTTCAACCTCAATGATCCAAATCATCACGCTA
GACTGCAGGTGCTCAGTATCCCAATGAGTCAAATAAGGGAGTATTTGATT
TACAAAAAGAAGAGAGTCGAATAGCCtagggtccacttaaagctattttt
ataTCGTTCGTGACTTTGTTGACTCCCATTCGACTCGATCGGCATTTACA
GACTGGATGGCACGATAAAGTGACCCGGTATTAtgtggtaatatgctttt
gcttaggcggactgtaaaacagatttttagttgttttggaaggtaaaaac
agtatgaagcaatgtttttatttggaaataagggattgcaaatcctggca
aatctgttattgatgtttgtttctcattttcgATTATACCTTTCAATTAC
AAGAAGGTTTAtagttatttggatttttaacattttctctcaaaatggcg
acctcgacAAACGCTCCTAGTGTAGACTTCACTGGaattcactggactca
gcgtcataaaaaattatcaaaaagcaaagttcagccaaaagtagactcta
gtcaaCCTCCACTGTTACATTGTTAGTTCTCAAAGAAGTCTTTTGGGAGG
AAGTAAAGATGGCAATTATAAACTAATGTGTTGTAGATTGTCAAGTGATT
ATTGTCAGGCGATCACATGCaaacacaggttgcaaaataaaagtctgaag
acaaatcacgcttttactcgaaattctTATgggcttgttacatgacattt
atttctgattggttcgaatgtATTGACACTAATAGAGTTATTGACTGTAA
GTTGTAAaacaagtaacatgggaataaaatagcgaactttttcgagtaat
cacatattTTGACTGCATTGGTATAATTTTACAACCCGTGTATTCATATC
TTCAAAACCCTTAAACTACGaaatcataaaaattctctCGTATGTTTTTT
CAGAGTGCATCGTGTATGAGTAAGAAGAAGGATTCCGAACAGAACGCATC
AGAAGTCGCTTTGACTTTCTTGACCAGCGGCCAACAAGCAAATGGAGAAC
AAAATGGAAAGACAGCTGATGGTAAGAATGATCGATAGTTGATTGTATTG
ATGAATCGATTGAAATTCTAATGGTTTATAAAATTCTTTGAGATATTTCG
ATTGATAGTCAGCTGTAGTAAAGGCCGCTATGTCTTCCCGTGTACAggag
cttgtgcaaagggattttatgattaattcaccaatgacgtcagtttccat
tgCAACGGGTGGTCACACCCGGTCACACCCGGCCTcgcctctcaaatttt
gatcttctacattcaaggaacaatattcaatcataaaatctctttgcaca
agctgctgcacacgggaagctttttcgcgacatagtgctggggtgaaaca
aggcatgtcccaaatatattttgcgtgacgcacaccgcttcccattattc
attacctttcatatatagctcaaaagaatcgtatcaacgagaggatttcg
aaaagtgctgggtcaaaaatttacatcaaggcaatctcaagatatcggcc
aaaaactgattttgacgttataaaatacatcgaaaaaacacgtcaaaaag
actatttaaatgacgtcattattgaagaaaggcgataattccgattaact
tactacaatcaaagcaaaattttgactggatTTAAATTaacgattttaaa
atatttcatgaaaaaaaaatttgaaaattcatgatgacgtcagcattttt
tgacgtattttaatttttccggacaacaaatgacgtcattcaaattttct
gaaattttttgaacaaatatttcagaatcattaatttacaactccagtca
aaatttggtgttgattgcattaataaaatagatcttatcggagtttttga
tttttctaaaaaagcgatgcattgcgggattgtttcgggagtattacaat
agaaatctcttaggaattcctcgagggaattctattgtaatacccccgaa
acaatcccacaatgcattgctgttttagaaaaataaaaaaatccgataag
gtctattgaagttatcgctgtttttcaataatgacgttatttgaatctta
cttatgacgtgtttttcgatgtattttataacgtcaaaatcaatttttga
ccgatatcttgagattggcttaatgcaaatttttgacccagcgcTTTTCG
AAATCCGCTCGttgatatgattcttttgagctatataattatgaacgtta
aggaataattggaagcggtgcgcgtcacgcaaaatatatttgggacatgc
cttgtttcacccgagtgGCCCCTACTACTGATGCAGTACCTTaatacacg
aatattactaggctgcaagtattcaacggccttgaaatttgcatgatctg
aaattaacacgaatttttctgctttttcaaagaaacagcggccggtttta
attaagggggtttttattaacatgaAATTTTTCACTTCGTGTttataaaa
tgactagtaatattcgtgtaataaggtattctTAAATAGACACCTTGGTA
TCATCGGGTGCAAATGCAAGTTTTTTTTACTGTTAACTAGTCGTTCAGAT
ACATCAAAATATACTAGTACCTACCCACCGATACCGAAAGGTACCTGACA
cgattttgccaaatttgaatGACGATAAATGTCTATTTCTTTGATCGCAT
TATCGCATGTCACGACTAAAAACCATCTGACAGTATTTGATTCAGATGAA
CTTGTATCGGACAGGTTGATAGGTTGTTTTAACGTTACACTTTTTATTTC
ACGAGGCATTCTTAATCAGTACTTATAGAAATATTGAACacatttttgtc
aattctagaTGTTGCAGATATGATCAAAAGTGCTCGCGTAGGTTCAAACG
TCATGAATTTATCCTTGAAAAATCGTTTACAAGAGTATTGCCAACGTTTG
AAGAAAGAACTACCCACCTATAAATCTGAATTGGGAGATAATGGTTTCTT
TATGACCGTCTGTACCGTTGATGAGATCGCCTACGAAGGTGGACCGGCCA
AAACGCGAAAAGAAGCAGAGAAAAATGCAGCGGAGGCAGCTCTTAAAGAA
CTCGGGTTAATGGCTGTTCGAGAACAATAAATAGAGAATGGGTGACTACA
TTTCAGGGATAGGATATGGAGAATTTTTAAACGGTGAACGGGTCGAAGCG
GAGCACGACCGGCAgtgtgttttcaaaaatatactttatATCAGAAACTA
TGACAGCGTTATCGGACATGACTTTCAGTTATACATACAATTACTTTGAT
GATGTGTATTTGATAAAGTGTACAGTTTACTGATTTGAACAATATCCGCC
AGATTTCATTTTCCATGATGGTTTTTATTTGATGTATCTGATAtacgggg
aaaattttcgtcggggaaaagtgacgaaattttggccaagtgacgaatat
ttttccccgacgaaagtTTTCGCTGGCCTTAATGCgcttaccaactacca
gcaagtgacgaatatttttcctcgacgtaaattttccccgacgaaaattt
tccccgacgaaattttccccgataaggtatgtgcTGAAATATGATAAATG
TAAATGTTATTCATAATGTATAAAGTTCACGATTCTTTATGACAAAACAT
TTTATTTCGATGCgattttattttccattttatgagtagagtattatttt
ttttaaaggttttaaatagAACATGACATGATTATAAtcaaaagtctaaa
aata Coding sequence (CDS) from alignment at sc0000109:518248..525301+ >TCONS_00010722 ID=TCONS_00010722|Name=TCONS_00010722|organism=Clytia hemisphaerica|type=CDS|length=2892bp|location=Sequence derived from alignment at sc0000109:518248..525301+ (Clytia hemisphaerica) AACTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTAG AGCTGCATTTACAGCGCTCAAAGGGTTAGGATATTTCAACACAGATATGG TTTATACTGCAGCCACCTTTACAAACACTGGCAAGAAACGGTCCAGTGTT AGTGGTGAACCAGACAACTCTGCAGCAACAAAGAAAATGTGTTTCGAGAA AAACTCAAAGTCGTTCAAAAGCCGACTTAACGAACTAGCGCAACAGAACA AGTTGCAGCAACCAACGTATGAGACGATTAGCACGACAAATGGATTTTTC ACAACAGTCACTTTCAACGGGCGGCAATTCAAGAGTGCATCGTGTATGAG TAAGAAGAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTCT TGACCAGCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGAT GaTGTTGCAGATATGATCAAAAGTGCTCGCGTAGGTTCAAACGTCATGAA TTTATCCTTGAAAAATCGTTTACAAGAGTATTGCCAACGTTTGAAGAAAG AACTACCCACCTATAAATCTGAATTGGGAGATAATGGTTTCTTTATGACC GTCTGTACCGTTGATGAGATCGCCTACGAAGGTGGACCGGCCAAAACGCG AAAAGAAGCAGAGAAAAATGCAGCGGAGGCAGCTCTTAAAGAACTCGGGT TAATGGCTGTTCGAGAACAATAAAACTTTACCGCCGAAGCTGCTACAGAC ACTCCTAAAGATGCAGACCTTAGAGCTGCATTTACAGCGCTCAAAGGGTT AGGATATTTCAACACAGATATGGTTTATACTGCAGCCACCTTTACAAACA CTGGCAAGAAACGGTCCAGTGTTAGTGGTGAACCAGACAACTCTGCAGCA ACAAAGAAAATGTGTTTCGAGAAAAACTCAAAGTCGTTCAAAAGCCGACT TAACGAACTAGCGCAACAGAACAAGTTGCAGCAACCAACGTATGAGACGA TTAGCACGACAAATGGATTTTTCACAACAGTCACTTTCAACGGGCGGCAA TTCAAGAGTGCATCGTGTATGAGTAAGAAGAAGGATTCCGAACAGAACGC ATCAGAAGTCGCTTTGACTTTCTTGACCAGCGGCCAACAAGCAAATGGAG AACAAAATGGAAAGACAGCTGATGaTGTTGCAGATATGATCAAAAGTGCT CGCGTAGGTTCAAACGTCATGAATTTATCCTTGAAAAATCGTTTACAAGA GTATTGCCAACGTTTGAAGAAAGAACTACCCACCTATAAATCTGAATTGG GAGATAATGGTTTCTTTATGACCGTCTGTACCGTTGATGAGATCGCCTAC GAAGGTGGACCGGCCAAAACGCGAAAAGAAGCAGAGAAAAATGCAGCGGA GGCAGCTCTTAAAGAACTCGGGTTAATGGCTGTTCGAGAACAATAAAACT TTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTAGAGCT GCATTTACAGCGCTCAAAGGGTTAGGATATTTCAACACAGATATGGTTTA TACTGCAGCCACCTTTACAAACACTGGCAAGAAACGGTCCAGTGTTAGTG GTGAACCAGACAACTCTGCAGCAACAAAGAAAATGTGTTTCGAGAAAAAC TCAAAGTCGTTCAAAAGCCGACTTAACGAACTAGCGCAACAGAACAAGTT GCAGCAACCAACGTATGAGACGATTAGCACGACAAATGGATTTTTCACAA CAGTCACTTTCAACGGGCGGCAATTCAAGAGTGCATCGTGTATGAGTAAG AAGAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTCTTGAC CAGCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGATGaTG TTGCAGATATGATCAAAAGTGCTCGCGTAGGTTCAAACGTCATGAATTTA TCCTTGAAAAATCGTTTACAAGAGTATTGCCAACGTTTGAAGAAAGAACT ACCCACCTATAAATCTGAATTGGGAGATAATGGTTTCTTTATGACCGTCT GTACCGTTGATGAGATCGCCTACGAAGGTGGACCGGCCAAAACGCGAAAA GAAGCAGAGAAAAATGCAGCGGAGGCAGCTCTTAAAGAACTCGGGTTAAT GGCTGTTCGAGAACAATAAAACTTTACCGCCGAAGCTGCTACAGACACTC CTAAAGATGCAGACCTTAGAGCTGCATTTACAGCGCTCAAAGGGTTAGGA TATTTCAACACAGATATGGTTTATACTGCAGCCACCTTTACAAACACTGG CAAGAAACGGTCCAGTGTTAGTGGTGAACCAGACAACTCTGCAGCAACAA AGAAAATGTGTTTCGAGAAAAACTCAAAGTCGTTCAAAAGCCGACTTAAC GAACTAGCGCAACAGAACAAGTTGCAGCAACCAACGTATGAGACGATTAG CACGACAAATGGATTTTTCACAACAGTCACTTTCAACGGGCGGCAATTCA AGAGTGCATCGTGTATGAGTAAGAAGAAGGATTCCGAACAGAACGCATCA GAAGTCGCTTTGACTTTCTTGACCAGCGGCCAACAAGCAAATGGAGAACA AAATGGAAAGACAGCTGATGaTGTTGCAGATATGATCAAAAGTGCTCGCG TAGGTTCAAACGTCATGAATTTATCCTTGAAAAATCGTTTACAAGAGTAT TGCCAACGTTTGAAGAAAGAACTACCCACCTATAAATCTGAATTGGGAGA TAATGGTTTCTTTATGACCGTCTGTACCGTTGATGAGATCGCCTACGAAG GTGGACCGGCCAAAACGCGAAAAGAAGCAGAGAAAAATGCAGCGGAGGCA GCTCTTAAAGAACTCGGGTTAATGGCTGTTCGAGAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010722-exon-sc0000109-1491911889:518248..518378 | TCONS_00010722-exon-sc0000109-1491911889:518248..518378 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1510915933:518248..518378 | TCONS_00010722-exon-sc0000109-1510915933:518248..518378 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1575043694:518248..518378 | TCONS_00010722-exon-sc0000109-1575043694:518248..518378 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1491911889:518702..518904 | TCONS_00010722-exon-sc0000109-1491911889:518702..518904 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1510915933:518702..518904 | TCONS_00010722-exon-sc0000109-1510915933:518702..518904 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1575043694:518702..518904 | TCONS_00010722-exon-sc0000109-1575043694:518702..518904 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1491911889:522501..522618 | TCONS_00010722-exon-sc0000109-1491911889:522501..522618 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1510915933:522501..522618 | TCONS_00010722-exon-sc0000109-1510915933:522501..522618 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1575043694:522501..522618 | TCONS_00010722-exon-sc0000109-1575043694:522501..522618 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1491911889:524406..525301 | TCONS_00010722-exon-sc0000109-1491911889:524406..525301 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1510915933:524406..525301 | TCONS_00010722-exon-sc0000109-1510915933:524406..525301 | Clytia hemisphaerica | exon |
TCONS_00010722-exon-sc0000109-1575043694:524406..525301 | TCONS_00010722-exon-sc0000109-1575043694:524406..525301 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000109 | supercontig | sc0000109:518248..525301 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR014720 | dsRBD_dom |
Blast
The following BLAST results are available for this feature:
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