Putative dsRNA binding protein (polypeptide) - C. hemisphaerica

Overview
NamePutative dsRNA binding protein
Unique NameTCONS_00010722-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010722-protein ID=TCONS_00010722-protein|Name=Putative dsRNA binding protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
NFTAEAATDTPKDADLRAAFTALKGLGYFNTDMVYTAATFTNTGKKRSSV
SGEPDNSAATKKMCFEKNSKSFKSRLNELAQQNKLQQPTYETISTTNGFF
TTVTFNGRQFKSASCMSKKKDSEQNASEVALTFLTSGQQANGEQNGKTAD
DVADMIKSARVGSNVMNLSLKNRLQEYCQRLKKELPTYKSELGDNGFFMT
VCTVDEIAYEGGPAKTRKEAEKNAAEAALKELGLMAVREQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006010XLOC_006010Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010722TCONS_00010722Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableGENE3D3.30.160.20coord: 142..240
e-value: 9.6E-17
score: 60.6
NoneNo IPR availableGENE3D3.30.160.20coord: 42..131
e-value: 3.2E-16
score: 59.3
NoneNo IPR availableCDDcd00048DSRMcoord: 72..134
e-value: 2.10819E-10
score: 53.4303
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 66..150
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 162..235
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 170..233
e-value: 1.7E-10
score: 50.9
coord: 72..135
e-value: 5.0E-9
score: 46.0
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 171..232
e-value: 1.8E-12
score: 47.6
coord: 73..132
e-value: 8.0E-10
score: 39.2
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 71..136
score: 11.577
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 169..234
score: 12.815

Blast
The following BLAST results are available for this feature:
BLAST of Putative dsRNA binding protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top