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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010714 ID=TCONS_00010714|Name=TCONS_00010714|organism=Clytia hemisphaerica|type=transcript|length=3156bpRun BLAST on NCBI protein sequence of TCONS_00010714-protein >TCONS_00010714-protein ID=TCONS_00010714-protein|Name=TCONS_00010714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp LLKGWKRRHDEESQSPFSQSSFGAASNNEVAIHSQQPLNHLMFISMLEHIRun BLAST on NCBI transcript from alignment at sc0000109:415525..456634+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010714 ID=TCONS_00010714|Name=TCONS_00010714|organism=Clytia hemisphaerica|type=transcript|length=41110bp|location=Sequence derived from alignment at sc0000109:415525..456634+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000109:415525..456634+ >TCONS_00010714 ID=TCONS_00010714|Name=TCONS_00010714|organism=Clytia hemisphaerica|type=CDS|length=25560bp|location=Sequence derived from alignment at sc0000109:415525..456634+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010714 vs. Swiss-Prot (Human)
Match: E2AK1 (Eukaryotic translation initiation factor 2-alpha kinase 1 OS=Homo sapiens GN=EIF2AK1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 1.795e-43 Identity = 154/548 (28.10%), Postives = 261/548 (47.63%), Query Frame = 3
Query: 183 SDALFKNVCEKLKSGMLIPDLAYLDDFKAVRMKYQSALKSLMEGSVQTLQ--PKFELLKTKEHLAFNSSAVSGFHTQSLYNEMFSMEEHIASGGFGKVVKAQNKLDHKFYAIKKIPLVDTDVKKILQTLREVQIFSNLEHTNIVRYHSSWLE--HGVETFLQK--------DVHSNQEKNVRRTNIXXXXXXXXXXXXFIPVIFQQPI-QSHGVFGVGISHLVHPPS--HPPKLLGLPAG---SNDEVNKEP----SDNHIVKKRPTLRFNN---------------NAKLLKMT-------LFIQMELCSRTLRDWLHQRNN---EYNEEIGIGVVEVR---DMARQISSAVHYIHRQGMLHRDMKPENVFLTYTAKQLTIKVGDFGLARYQPSPSNEPLSPVVDGNAPLFNFGNTE---HTIGVGTATYAAPEQLKEPFYTNKVDIWSLGIILYEMYKPFCTEMERGRSIQNLLYKRELADELSTKWQEECELILKMTSLQPRDRPEASYLLKF-FTQNPEKKSLSELEKTIKLQREIIEGLRRQL 1664
S +FK +C+ L+ D+F ++R+ + A+ LM + + ++ P ++ + ++ S V+ S Y F + GG+G+V K +NKLD ++YAIKKI + ++ LREV++ + L+H NIV YH++W+E H ++ + +V S+QE++ + ++ ++ + +IF +P + FG + + S + L+ +G S E+ + S + IV+++ LR N+ N L T L IQM+LC +L DW+ +RN EY +E V + +++ V YIH G++HRD+KP N+FL +Q +K+GDFGLA + ++ N N HT VGT YA+PEQL+ Y K D++SLG++L E+++PF TEMER + L +L + L + + + I +T RP A LL+ QN +L+ K I+ ++EI E L++QL
Sbjct: 87 SRQVFKLLCQTFIKMGLLSSFTCSDEFSSLRLHHNRAITHLMRSAKERVRQDPCEDISRIQK---IRSREVALEAQTSRYLNEFEELAILGKGGYGRVYKVRNKLDGQYYAIKKILIKGATKTVCMKVLREVKVLAGLQHPNIVGYHTAWIEHVHVIQPRADRAAIELPSLEVLSDQEEDREQCGVKNDESSSSS------IIFAEPTPEKEKRFGESDTENQNNKSVKYTTNLVIRESGELESTLELQENGLAGLSASSIVEQQLPLRRNSHLEESFTSTEESSEENVNFLGQTEAQYHLMLHIQMQLCELSLWDWIVERNKRGREYVDESACPYVMANVATKIFQELVEGVFYIHNMGIVHRDLKPRNIFLHGPDQQ--VKIGDFGLA----------CTDILQKNTDWTNRNGKRTPTHTSRVGTCLYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTG-LRTGQLPESLRKRCPVQAKYIQHLTRRNSSQRPSAIQLLQSELFQNSGNVNLTLQMKIIEQEKEIAE-LKKQL 611 The following BLAST results are available for this feature:
BLAST of TCONS_00010714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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