TCONS_00010542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010542
Unique NameTCONS_00010542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010542 ID=TCONS_00010542|Name=TCONS_00010542|organism=Clytia hemisphaerica|type=transcript|length=738bp
gttaaagattaaaaattgaaatcaaatatATATCAACGGAAAAATATGTC
CGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTTCGGAAAGATCTTA
AAGCTCGATTACGAAAAATGACTAAAGAGGAGCGcatcaaccaatcaaaa
acgATCTTCGAAAAACTCACTTCGACAGAGGTGTTCAAGAAAAGTCGAAC
ACTTTCATTATACCTTAGTATGTCATCAGAAGTCCATACAAACGATATAC
TTATGCATTGTTTCGATACCggtaaaaaatgttatattccCCATTACACA
GAAGATTATATGAAAATGGTTTTCATCAAAGACAAGGCTGATTATGATAG
TTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCTGATTATGATAGTT
TGCCTTTAACAGCCTGGAACATCAAACAACCAGCCGACGATGATGATCAA
AGACTAGATATTATGGATAAAGGCAATTTAGATTTAATTATAGTTCCTGG
TCTGGGTTTTACACGCTCTGGTTTGAGACTTGGGCGTGGCAAGGGatatt
atgataattattttcgaaaatatgaAGAGAAATTTGGACAGAAACCTTAT
CTTATTGGTTTAGCGTATTCATGTCAAATGGTTGAAGATTTGCCGGCAGA
CCAATTTGATATCCCGCTGGATCAAGTTTTATTTCCGTAATATTTCGCCT
AAAACTCTAACCCGAAAGATGTAAAGACGAATCAAGgg
Run BLAST on NCBI

protein sequence of TCONS_00010542-protein

>TCONS_00010542-protein ID=TCONS_00010542-protein|Name=TCONS_00010542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MSATRSLQSAKQALRKDLKARLRKMTKEERINQSKTIFEKLTSTEVFKKS
RTLSLYLSMSSEVHTNDILMHCFDTGKKCYIPHYTEDYMKMVFIKDKADY
DSLPLTAWNIKQPADYDSLPLTAWNIKQPADDDDQRLDIMDKGNLDLIIV
PGLGFTRSGLRLGRGKGYYDNYFRKYEEKFGQKPYLIGLAYSCQMVEDLP
ADQFDIPLDQVLFP
Run BLAST on NCBI

transcript from alignment at sc0000107:129729..131138-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010542 ID=TCONS_00010542|Name=TCONS_00010542|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at sc0000107:129729..131138- (Clytia hemisphaerica)
GTTAAAGATTAAAAATTGAAATCAAATATATATCAACGGAAAAATATGTC
CGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTTCGGAAAGATCTTA
AAGCTCGATTACGAAAAATGACTAAAGAGGAGCGCATCAACCAATCAAAA
ACGATCTTCGAAAAACTCACTTCGACAGAGGTGTTCAAGAAAAGTCGAAC
ACTTTCATTATACCTTAGTATGTCATCAGAAGTCCATACAAACGATATAC
TTATGCATTGTTTCGATACCGGTAAAAAATGTTATATTCCCCATTACACA
GAAGATTATATGAAAATGGTTTTCATCAAAGACAAGGCTGATTATGATAG
TTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCCGACNTCACACGAA
ATACGACTTAGAAGTGATAAATGCTTTCTGAATTTGATTAAAACTGGGTA
TTTTATCACTTTATTGAGGCTTTTGAATGCTACAATTACTAGTTTTTATT
TTGATTTCGAAGCTTTACAGATTTACCGCCTAAAGTAGATCTCTCTTTCC
TTTATCCTCTTCCTATGTAGGTATTTCTTTCATCTACTCATGTATTTTAT
AGGCACGCTTTTTTTGTTCGTCGTTTTTCAAAAAAGTTCCTTGGGTAAAC
TCATGACAGAAATTTTCTCTAAAAATATTGTATACAGTACACGAAATATA
ATCTTTACTTCTTTATTGTAGTTAAAGATTAAAAATTGAAATCAAATATA
TATCAACGGAAAAATATGTCAGCAACTCGAAGCTTACAATCCGCAAAGCA
AGCACTTCGGAAAGATCTTAAAGCTAGATTACGAAAAATGACTAAAGAGG
AGCGCATCAACCAATCAAAAACGATCTTCGAAAAACTCACTTCGACAGAG
GTGTTCAAGAAAAGTCGAACACTTTCATTATACCTTAGTATGTCATCAGA
AGTCCATACAAACGATATACTTATGCATTGTTTCGATACCGGTAAAAAAT
GTTATATTCCCCATTACACAGAAGATTATATGAAAATGGTTTTCATCAAA
GACAAGGCTGATTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACA
ACCAGCCGACGATGATGATCAAAGACTAGATATTATGGATAAAGGCAATT
TAGATTTAATTATAGTTCCTGGTCTGGGTTTTACACGCTCTGGTTTGAGA
CTTGGGCGTGGCAAGGGATATTATGATAATTATTTTCGAAAATATGAAGA
GAAATTTGGACAGAAACCTTATCTTATTGGTTTAGCGTATTCATGTCAAA
TGGTTGAAGATTTGCCGGCAGACCAATTTGATATCCCGCTGGATCAAGTT
TTATTTCCGTAATATTTCGCCTAAAACTCTAACCCGAAAGATGTAAAGAC
GAATCAAGGG

Coding sequence (CDS) from alignment at sc0000107:129729..131138-

>TCONS_00010542 ID=TCONS_00010542|Name=TCONS_00010542|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0000107:129729..131138- (Clytia hemisphaerica)
GCTGATTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCAGC
CGACGATGATGATCAAAGACTAGATATTATGGATAAAGGCAATTTAGATT
TAATTATAGTTCCTGGTCTGGGTTTTACACGCTCTGGTTTGAGACTTGGG
CGTGGCAAGGGATATTATGATAATTATTTTCGAAAATATGAAGAGAAATT
TGGACAGAAACCTTATCTTATTGGTTTAGCGTATTCATGTCAAATGGTTG
AAGATTTGCCGGCAGACCAATTTGATATCCCGCTGGATCAAGTTTTATTT
CCGTAAATGTCCGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTTCG
GAAAGATCTTAAAGCTCGATTACGAAAAATGACTAAAGAGGAGCGCATCA
ACCAATCAAAAACGATCTTCGAAAAACTCACTTCGACAGAGGTGTTCAAG
AAAAGTCGAACACTTTCATTATACCTTAGTATGTCATCAGAAGTCCATAC
AAACGATATACTTATGCATTGTTTCGATACCGGTAAAAAATGTTATATTC
CCCATTACACAGAAGATTATATGAAAATGGTTTTCATCAAAGACAAGGCT
GATTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCTGA
TTATGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCAGCCGACG
ATGATGATCAAAGACTAGATATTATGGATAAAGGCAATTTAGATTTAATT
ATAGTTCCTGGTCTGGGTTTTACACGCTCTGGTTTGAGACTTGGGCGTGG
CAAGGGATATTATGATAATTATTTTCGAAAATATGAAGAGAAATTTGGAC
AGAAACCTTATCTTATTGGTTTAGCGTATTCATGTCAAATGGTTGAAGAT
TTGCCGGCAGACCAATTTGATATCCCGCTGGATCAAGTTTTATTTCCGTA
AATGTCCGCAACTCGAAGCTTACAATCCGCAAAGCAAGCACTTCGGAAAG
ATCTTAAAGCTCGATTACGAAAAATGACTAAAGAGGAGCGCATCAACCAA
TCAAAAACGATCTTCGAAAAACTCACTTCGACAGAGGTGTTCAAGAAAAG
TCGAACACTTTCATTATACCTTAGTATGTCATCAGAAGTCCATACAAACG
ATATACTTATGCATTGTTTCGATACCGGTAAAAAATGTTATATTCCCCAT
TACACAGAAGATTATATGAAAATGGTTTTCATCAAAGACAAGGCTGATTA
TGATAGTTTGCCTTTAACAGCCTGGAACATCAAACAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005911XLOC_005911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010542-proteinTCONS_00010542-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010542-exon-sc0000107-1575043694:130755..131138TCONS_00010542-exon-sc0000107-1575043694:130755..131138Clytia hemisphaericaexon
TCONS_00010542-exon-sc0000107-1575043694:129729..130082TCONS_00010542-exon-sc0000107-1575043694:129729..130082Clytia hemisphaericaexon
TCONS_00010542-exon-sc0000107-1510915933:130755..131138TCONS_00010542-exon-sc0000107-1510915933:130755..131138Clytia hemisphaericaexon
TCONS_00010542-exon-sc0000107-1510915933:129729..130082TCONS_00010542-exon-sc0000107-1510915933:129729..130082Clytia hemisphaericaexon
TCONS_00010542-exon-sc0000107-1491911889:130755..131138TCONS_00010542-exon-sc0000107-1491911889:130755..131138Clytia hemisphaericaexon
TCONS_00010542-exon-sc0000107-1491911889:129729..130082TCONS_00010542-exon-sc0000107-1491911889:129729..130082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:129729..131138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4416	15.6105	6.99416	5.14597	5.53457	4.76707	9.55416	11.0268	6.92462	5.41717	3.9823	4.14981	2.29663	1.16741	3.74221	5.91745	4.56508	6.2366	0.771688	1.03435	2.5269	0.868858	21.0937	17.2032	4.86188	5.13481	1.02739	0.688354	5.83531	7.39278
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002698FTHF_cligase
Blast
[Close]
BLAST of TCONS_00010542 vs. Swiss-Prot (Human)
Match: MTHFS (5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.436e-48
Identity = 81/213 (38.03%), Postives = 126/213 (59.15%), Query Frame = 1 
Query:   52 ATRSLQSAKQALRKDLKARLRKMTKEERINQSKTIFEKLTSTEVFKKSRTLSLYLSMSSEVHTNDILMHCFDTGKKCYIPHY--TEDYMKMVFIKDKADYDSLPLTAWNIKQPADYDSLPLTAWNIKQPADDDDQRLDIMDKGNLDLIIVPGLGFTRSGLRLGRGKGYYDNYFRKYEEKFGQKPYLIGLAYSCQMVEDLPADQFDIPLDQVLF 684
            A  ++ SAK++LR +LK RLR M+ EER+ QS+ + +K+ +   ++KS+ +S++LSM  E+ T +I+   F  GK C+IP Y    ++M MV I+   +   LP T+WNI QP                  + D R + +  G LDLI +PGLGF + G RLGRGKGYYD Y ++  +    KPY + LA+  Q+   +P ++ D+ +D+VL+
Sbjct:    2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG-----------------EGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLY 197
The following BLAST results are available for this feature:
BLAST of TCONS_00010542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTHFS8.436e-4838.035-formyltetrahydrofolate cyclo-ligase OS=Homo sapi... [more]
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