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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=transcript|length=390bp
TAGATATTATGAAAATAGAAGTGTCGACAGATTTAATAATAACATGAAAG
TTTGATAATTTTACTTGGTATGGAAGGAATCTACAATTGTTCATCTTCAG
AAAAAGTTCTTAATCTGGAGAAAGAGCTTGAGAAGGAACTGAAGGATTTG
CAAAATGAAATCGAAGCTGGTGGAGTCATTGGGAAAACAGAACATCAAAG
TTTTAGCTCTGTCCCAATTCCTAATGATGCTAAATTCTTCAGAAAACAAC
GAAAGATTGCTGTTAAAAACTGTTTAAAGGTTCGAGAAGCTAAACCATTG
TTGTTGCAAAGCGAACTGATGAAAGAAGAGGTTGATTCTTGTCTGAAGAG
TGAATACACAAATGAATCAATCCCTGTACTGTTACATCAG Run BLAST on NCBI protein sequence of TCONS_00010519-protein >TCONS_00010519-protein ID=TCONS_00010519-protein|Name=TCONS_00010519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MEGIYNCSSSEKVLNLEKELEKELKDLQNEIEAGGVIGKTEHQSFSSVPI
PNDAKFFRKQRKIAVKNCLKVREAKPLLLQSELMKEEVDSCLKSEYTNES
IPVLLHQ Run BLAST on NCBI transcript from alignment at sc0000107:275625..276554+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at sc0000107:275625..276554+ (Clytia hemisphaerica)
TAGATATTATGAAAATAGAAGTGTCGACAGATTTAATAATAACATGAAAG
TTTGATAATTTTACTTGGTATGGAAGGAATCTACAATTGTTCATCTTCAG
AAAAAGTTCTTAATCTGGAGAAAGAGCTTGAGAAGGAACTGAAGGATTTG
CAAAATGAAATCGAAGCTGGTGGAGTCATTGGGAAAACAGAACATCAAAG
TTTTAGGTATGTCTTTGcttaatataataataatatttaacCTTTCTCAG
TGTTCCaaatttattatcattattatcatATTACATTTCTTCATTAGGAC
GACTATACCTTTATGAATCTTGaactattttgttttttcttcaactttag
caaatgttgttttttttcatacaGCAAACAAAcctcaattattttcaaat
aaattgatttaaattCCTTTCTTTTTCAGCTCTGTCCCAATTCCTAATGA
TGCTAAATTCTTCAGAAAACAACGAAAGATTGCTGTTAAAAACTGTTTAA
AGGTTAATGTGCTTCATTCATTTGTGCTATGAAATAAAGTTTGGTTGAAA
TAATTAGATGAGTTTGCTTAAAAGGACATCATTTAATCCATCTTCAATta
cttacacagcatttttagacaaaagaaagaacaactttctctcaattttt
tagaaattcttttgtttagaaTATCTTTAAGGTTAGGAAATATTCAAGCC
TAATGGGaaagaaatagaatgaaaagttTGTGAGTGATATTCATGTTATA
CTATTCTTCCAGGAATAGGCTTGTATGATTTAAGAATACTAATCATGATA
TTTCATTAAAAATCAATAGGTTCGAGAAGCTAAACCATTGTTGTTGCAAA
GCGAACTGATGAAAGAAGAGGTTGATTCTTGTCTGAAGAGTGAATACACA
AATGAATCAATCCCTGTACTGTTACATCAG Coding sequence (CDS) from alignment at sc0000107:275625..276554+ >TCONS_00010519 ID=TCONS_00010519|Name=TCONS_00010519|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000107:275625..276554+ (Clytia hemisphaerica)
ATGGAAGGAATCTACAATTGTTCATCTTCAGAAAAAGTTCTTAATCTGGA
GAAAGAGCTTGAGAAGGAACTGAAGGATTTGCAAAATGAAATCGAAGCTG
GTGGAGTCATTGGGAAAACAGAACATCAAAGTTTTAGCTCTGTCCCAATT
CCTAATGATGCTAAATTCTTCAGAAAACAACGAAAGATTGCTGTTAAAAA
CTGTTTAAAGGTTCGAGAAGCTAAACCATTGTTGTTGCAAAGCGAACTGA
TGAAAGAAGAGGTTGATTCTTGTCTGAAGAGTGAATACACAAATGAATCA
ATCCCTGTACTGTTACATCAGATGGAAGGAATCTACAATTGTTCATCTTC
AGAAAAAGTTCTTAATCTGGAGAAAGAGCTTGAGAAGGAACTGAAGGATT
TGCAAAATGAAATCGAAGCTGGTGGAGTCATTGGGAAAACAGAACATCAA
AGTTTTAGCTCTGTCCCAATTCCTAATGATGCTAAATTCTTCAGAAAACA
ACGAAAGATTGCTGTTAAAAACTGTTTAAAGGTTCGAGAAGCTAAACCAT
TGTTGTTGCAAAGCGAACTGATGAAAGAAGAGGTTGATTCTTGTCTGAAG
AGTGAATACACAAATGAATCAATCCCTGTACTGTTACATCAGATGGAAGG
AATCTACAATTGTTCATCTTCAGAAAAAGTTCTTAATCTGGAGAAAGAGC
TTGAGAAGGAACTGAAGGATTTGCAAAATGAAATCGAAGCTGGTGGAGTC
ATTGGGAAAACAGAACATCAAAGTTTTAGCTCTGTCCCAATTCCTAATGA
TGCTAAATTCTTCAGAAAACAACGAAAGATTGCTGTTAAAAACTGTTTAA
AGGTTCGAGAAGCTAAACCATTGTTGTTGCAAAGCGAACTGATGAAAGAA
GAGGTTGATTCTTGTCTGAAGAGTGAATACACAAATGAATCAATCCCTGT
ACTGTTACATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010519-exon-sc0000107-1491911889:275625..275830 | TCONS_00010519-exon-sc0000107-1491911889:275625..275830 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1510915933:275625..275830 | TCONS_00010519-exon-sc0000107-1510915933:275625..275830 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1575043694:275625..275830 | TCONS_00010519-exon-sc0000107-1575043694:275625..275830 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1491911889:276054..276126 | TCONS_00010519-exon-sc0000107-1491911889:276054..276126 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1510915933:276054..276126 | TCONS_00010519-exon-sc0000107-1510915933:276054..276126 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1575043694:276054..276126 | TCONS_00010519-exon-sc0000107-1575043694:276054..276126 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1491911889:276444..276554 | TCONS_00010519-exon-sc0000107-1491911889:276444..276554 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1510915933:276444..276554 | TCONS_00010519-exon-sc0000107-1510915933:276444..276554 | Clytia hemisphaerica | exon |
| TCONS_00010519-exon-sc0000107-1575043694:276444..276554 | TCONS_00010519-exon-sc0000107-1575043694:276444..276554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:275625..276554 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029376 | DUF4549 |
Blast
BLAST of TCONS_00010519 vs. Swiss-Prot (Human)
Match: CF183 (Putative uncharacterized protein C6orf183 OS=Homo sapiens GN=C6orf183 PE=5 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 1.532e-18 Identity = 45/107 (42.06%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 70 MEGIYNCSSSXXXXXXXXXXXXXXXXXQNEIEAGGVIGKTEHQSFSSVPIPNDAKFFRKQRKIAVKNCLKVREAKPLLLQSELMKEEVDSCLKSEYTNESIPVLLHQ 390
M+ IY +S+E+V LEK+L +L +L++EIE G + T ++ +SS+ +P D +FR++R++A+K L+V E+KPL++Q++ ++ E++SCL+ EYT E++P+LL Q
Sbjct: 1 MDEIYKITSTERVQLLEKKLAVQLTELKSEIEEQGALQGTANRVYSSIQMPKDIYYFRRERELALKKTLQVAESKPLVVQADAVQRELESCLRREYTPENLPLLLLQ 107
The following BLAST results are available for this feature:
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