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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010087 ID=TCONS_00010087|Name=TCONS_00010087|organism=Clytia hemisphaerica|type=transcript|length=403bp
CTCCGAGTCATGGAGCTGTCCAATATGTGAATCCAACAAATATATTGGAA
TGATTGAATGTGATTTATGCAACGTCTGGTATCACATATTCAAACTGGAG
TTTATTATTGGTTTCCTTATTGCGACTATCCTCAGCTGACTTTGTGTGGT
CGCCAGCAGAAAGTACCGAAAATATGCTAGTAAAGgatcGCAAATATGTG
AAGGAGACCAAAGAAATCGCAATCAAGATATCGTTTTTTAACACTTCGAA
TAGCAATCATACTGGAAAAGTTTGGAATCATTATCACAAAGATGCCAGAA
AGGAAGGACGGAAGAGaaagaacatcaaatttttgatttcattgcgttta
atttatactgattgtagattttcatacccagaaaattatatagaaaagag
cat Run BLAST on NCBI transcript from alignment at sc0000102:421307..425436+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010087 ID=TCONS_00010087|Name=TCONS_00010087|organism=Clytia hemisphaerica|type=transcript|length=4130bp|location=Sequence derived from alignment at sc0000102:421307..425436+ (Clytia hemisphaerica)
CTCCGAGTCATGGAGCTGTCCAATATGTGAATCCAACAAATATATTGGAA
TGATTGAATGTGATTTATGCAACGTCTGGTATCACATGTAAGTTAAAAGC
ATTATACTGGGTACACATTTTtcttaagaaactagttttaccaagcaacC
TTAAGAAATGGGCCTTTTGAGCCATAATGTTTCTGAACTTTTTGACATAa
ccagcctcagcatgtttcttagtttttagggattctgagcctcgtgtttc
ttaaaactgaagtgtgtttcttaaaaagaaaaaaacgtgtaacccaAAAA
TATGAGGGCTTGATGGCTTGATGACTAAATTGAAACTTGGTTTATAATTT
TCAGACTTTTCGGTTCAGTTGCTCTCAAGTTAAGTTTTTGaagtcaaatt
ttgaaaaagccagaaaacaaaacaaaatcaaattaaGAATCTTTAGCAAA
TTTTGACACAAAATTCCTTTCCTCGTTAAAATCTTTAGTTTCGCTATACT
AATTTGAGGTCGTTGTACTGTTTTCCAATCTTCGTACTATGATGATAAAA
TTGATAATCGATTTATTTGCACAGGGATTGCGTCAAGCTGCAACACGAAG
AGGAATATTAGGTCTGCGAAAAATGCCCAAGTCTCAGAAAAAGACCTCGC
AAATAGACTAATGATAGTTCTTTATGATAGTTTACAAAGAAAGAATAACC
AGTTATTTACAACTTATTCGTTTTTCCGTTTTCTCTCTTGTTCAAAGAAC
TGCCTGGTTCAGATTAGTACTTTTTTATTCAGAATATTGTTCCAATCATC
TCTTGGTTTACCATTGAGCCCTTCTTTTTTTAAGTGTCCGAAAACTAGGT
TTATCACCCAAAGTTAACAATTTAGCCTCACTCTGTATAATTCAGGATTT
TCTCTGTCACACGTATACGTCGAGCCAATGTTGAAGTTAACCACGTTATA
GTTATTTTATAATAAAAAGCATGTAAATAGTAATTTGCGTCTTCTCGTGA
TTTAACTTTATACTTGATTAAAAGCTAAGATCTGAGATGACGCAAACTCT
CGCGAACaagtccgaaaacgaaagtgaatccCGAAATGATATACTACCCG
ATTTCGGATttaatcgggaaatcgggaaattcgGGGAAATGACGACTTGC
GTTTTCNGCAGATTCGtacttttttcttcagaatATTGTTCCAATCATCT
CTTGGTTTACCATCGAGCCCTTCTTTTTTTAAGTGTCCGAGAACTAGGTT
TATCACCCAAAGTTAACAATTTAGCCTCACTCTGTATAATTCAGGATTTT
CTCTGTCGCACGAATACGTCGAGCCAATGTTGAAGTTAAGCACGTTATAG
TTATTTTATAATGAAAAGCATGTAAATAGTAATTTGCGTCCTCTCGTGAT
TTAACTTTCTCTTTGATTAAAAGCTAAGATCTGAGATGACGCAAACTCTC
GCGAACAActccaaaaacgaaagtgaaacccGAAATGATATACTACCCga
tttcggattttttttttttttttttttttttttttttttaaacaaaaaca
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNatataataaaagccgacagaaaaaaggagggttaagtggcggatgaaa
aataatgcctagggtctgaagtttgtcgaacaaagattgtcttgcatggg
aatatatagctcagtgcagaagaaagtgttgagtgttttcaacagagtta
gttcggcaaccacagaaagggtctaaagtgtcgcggaagccatgtctaaa
tttatgctcgttgagatggctgaaaccgagacgaagtcgattaagaaaga
tcactccttgaatgtcaggaacatcaaaaacattcGGATTtaattggaaa
atcgggaaattcgGGGAAAATGACGACTTGCGTTTTCTCGGCATTTAGCT
GCTTCTTTACGTATTAAGAGCAAGCCTGAAGCCCTCAATTTAGATTACCC
AGCCGGTacacaacgttttcaaaacgttttttttaggtttaaattaCGTT
GTGAAGAAACGCGTTGCCacaaaacgttttaaaaacgttttttcaacgtt
gtaGAGAAAACGCGTTATTTcataacgtttataaaacgTTGTTGAAACGT
TTTAATCCAAacgtttttcaaaggttttgctaACAACGTTTAATAAgcgt
tttttctaaacttgatttaaacgtgattttgatcaacgttttttaaacgt
ctaTAAAATNNAACCTCATCGACTCTCAGCTTTTATCCCAAGAAAATTTC
TGAGACTTTACCTACCTCTGCTCTGAGATATAGGAGAGATATTCTATATA
TCTTTTTCTATTTtactttattgacttctctctaAGTGTTAAATATATTT
CAATAAAACGCCCACTCCCTGTTTGAATACCTCGTAAGATAGCCCACCCN
ctaaatatattttaataaaacgcCCACTCCCTGTTTGAATACCTCGTAAG
ATAGCCGACCCGTAGAATAGAAACTTGTGAAATTATCTCTGTCACGCCCT
TTCCAAATTACAAACCACGCACCCGCTCCCCGGCCCACTCGCCGCCCCCA
TCGTCCGCCGAATTAACAATGGAATGGCTTCTTTTCTGGACagctttcga
acgttcgaacgttcaaAGGTTCGAATTCGAAATCACTTGtagttcaaaat
aaaaatcaaacaaagtaaAGGTTCTGTAAAAGTTGGATGTTTCATGCACG
AAGACTGGAAGAAGCTGGTTCTGTTACAAAAATCAACTAGATAATGTAAG
TAGTTTACATTAAactgaaaatgcttttgatatTTAAGTTAATTCTTAGA
GGCTTTATCGGTGTAGCTTATTTCAGGTTTCAATTTCTgatgatatttat
ttttgagagcaaaccctggaaaaattacataatcttcagtaaactttatg
ttaaaactttttattttaacttctttTCCCTCAGATTCAAACTGGAGTTT
ATTATTGGTTTCCTTATTGCGACTATCCTCAGCTGACTTTGTGTGGTCGC
CAGCAGAAAGTACCGAAAATATGCTAGTAAAGGTAGGTGAAATGTAACAA
AACTTtaataatatctttccaaaactatGCTAATTTCTTGTTAATACCCC
TGCATCACTGACTGAGCTTGGTACTTCAAACTACTGAAATTTGACTTGGA
AACACCCATGTCTCAACGACAATAATTTAGCAAAGTCCTTGGTAGAATAC
TTTTGTGAAACATGaagtttggccatgaaatttaagaagttttttcttta
tccttCTGGAGTATTCTTTTTTCCGTGGAATAAGAACGTAGTTTTCAACG
TCTCAACCGcagctaaaaaatctttaaacatcaaatttactattagtctt
ttattttttcaggatcGCAAATATGTGAAGGAGACCAAAGAAATCGCAAT
CAAGATATCGTTTTTTAACACTTCGAATAGCAATCATACTGGAAAAGTTT
GGAATCATTATCACAAAGATGCCAGAAAGGAAGGACGGAAGAGaaagaac
atcaaatttttgatttcattgcgtttaatttatactgattgtagattttc
atacccagaaaattatatagaaaagagcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010087-exon-sc0000102-1491911889:421307..421393 | TCONS_00010087-exon-sc0000102-1491911889:421307..421393 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1510915933:421307..421393 | TCONS_00010087-exon-sc0000102-1510915933:421307..421393 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1575043694:421307..421393 | TCONS_00010087-exon-sc0000102-1575043694:421307..421393 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1491911889:424791..424888 | TCONS_00010087-exon-sc0000102-1491911889:424791..424888 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1510915933:424791..424888 | TCONS_00010087-exon-sc0000102-1510915933:424791..424888 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1575043694:424791..424888 | TCONS_00010087-exon-sc0000102-1575043694:424791..424888 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1491911889:425219..425436 | TCONS_00010087-exon-sc0000102-1491911889:425219..425436 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1510915933:425219..425436 | TCONS_00010087-exon-sc0000102-1510915933:425219..425436 | Clytia hemisphaerica | exon |
| TCONS_00010087-exon-sc0000102-1575043694:425219..425436 | TCONS_00010087-exon-sc0000102-1575043694:425219..425436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:421307..425436 + |
Blast
The following BLAST results are available for this feature:
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