TCONS_00010025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010025
Unique NameTCONS_00010025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010025 ID=TCONS_00010025|Name=TCONS_00010025|organism=Clytia hemisphaerica|type=transcript|length=1162bp
CATGAAATatgtcaagaaattggattggtttgattttagaataattatat
tatgaaataattttatttgaatGAGGAAATCTGGTCAAAACAtcgatatt
ttataaaaacaagatGGACGCTTGTCTTTGGTGATAAAGTTCAACAGTTA
CTCGATTAGCTGGGGTCATCTTGTCTCACTAAAGAATTATGATTCAAATC
CAACAACTCCTGGTCTATACATGACAAAGCTTAGAAAAGAACATGTAAAG
CTGACACCTTCTTCAAGAATGAAAGTTAGGCTTGCTGCACAGGTTCTCAG
TACAACTGTTGCAAACTGTTTGAAGTATAGAAACAATCCAGAAACAAAGG
GTACAGAAGAATTCTGTCGAAACTTCGATTATTTTTTCGACTGCCTCAAT
GGGCAATATGAAAGGCAAGGCATTGTTACAAAGAAGCCAGCACTAAACCC
ATACAAATCAGTCAACGATCCTCGTTTTGATTGGCTAGAGAAGGACTTCA
TTAAAGATTACATTATACAATGGCAAGAAGAAGCAAAATCACAAATACAC
TTGACAAAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTGA
AGGATTGCAGATCACAGTCAAGTCAACAGTGCGACTAATCAAAGATCTTC
TTTTGGAATACCCTGGCTTTTATGTATTAAGTGGCAAATTTTCTCAGGAT
CCCCTTGAACAGCACTTTTCAGCACAACGAAGGAAGTGTGGTTTCAATAC
AAATCCAACAGAGGACCAATATGCTCACAGTGAACTTGGTTTGCACAGTG
CAAAATCTAAGAATGTTGCAAGTTTGAATGGAAACTGTACCATACCTAAG
GAAAATCAACAACAGTTCATGGAAGATGTCGGCATACCCTTGAAGCGTCG
AAAGCGCAAATAAAGGtctttctgttctttttttagtttttaactTAGAG
ATTTTTGCAGGGATCTAGGTTCAAAATCTCAAATTACCATTTTATTAGGT
GTTTTGAAAATCAGAATCATACAATACAACTTTTTTAAACTATTCTTACA
CCATTCACTTATACAACTATTCTTACACTATTCACtatacaacttttttt
atactATTCTTACACTATTCACGCTTTTTACAACAACACAACactgtttt
gtttcattttca
Run BLAST on NCBI

protein sequence of TCONS_00010025-protein

>TCONS_00010025-protein ID=TCONS_00010025-protein|Name=TCONS_00010025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MTKLRKEHVKLTPSSRMKVRLAAQVLSTTVANCLKYRNNPETKGTEEFCR
NFDYFFDCLNGQYERQGIVTKKPALNPYKSVNDPRFDWLEKDFIKDYIIQ
WQEEAKSQIHLTKKERNKLCLSQPTFEGLQITVKSTVRLIKDLLLEYPGF
YVLSGKFSQDPLEQHFSAQRRKCGFNTNPTEDQYAHSELGLHSAKSKNVA
SLNGNCTIPKENQQQFMEDVGIPLKRRKRK
Run BLAST on NCBI

transcript from alignment at sc0000101:481464..489118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010025 ID=TCONS_00010025|Name=TCONS_00010025|organism=Clytia hemisphaerica|type=transcript|length=7655bp|location=Sequence derived from alignment at sc0000101:481464..489118- (Clytia hemisphaerica)
CATGAAATATGTCAAGAAATTGGATTGGTTTGATTTTAGAATAATTATAT
TATGAAATAATTTTATTTGAATGAGGAAATCTGGTCAAAACATCGATATT
TTATAAAAACAAGATGGACGCTTGTCTTTGGTGATAAAGGTAAGGTACTA
CTTAAAATGGGTCTGAAATAGATATTTAAAGTTTTTTTTTGTGATTGAAA
ATAATTTTCTAGCATTGCAAAAGGGTTAAAGTTTCAAATTATGAAGGACT
CTTTTGTGGCCTGGCTCTTTTCAGACTGGCCTGGCTCACTTTTTACATGG
GTTAAATTTGGGCTTATATGTTGAAAGAGAGACAAATGGCTGTATATTTT
GATGGTAAAGCTGCTTATTTCTTATTCGAAATCTCTCTAAAAGTTATAAA
TTATGAGTACCTGTTAGAAAGAAATAATTATTAGAGGTTTAGGGCGCCTA
AAATTTTGAATTTTAAAAGTTTTTTGGAACAAAAATCTCAGCATTTTACT
TCCATCATGGAGGGCCATGTGAAGCTGCTTGAAAGTTTATGTAGAATCTG
TGGAAAAACAATCAAATGTGACAAGGGGAGGAATGCTAAAAATGCCATAG
ACTATGTAGAAGCTGCAAAGCATTTAGATGTATTTCTTAATGATGATGTT
GAAAGTGTCCATCCAAAGAAAGTTTGTGAAAGTTGCCGAAAGACCCTTTC
AAAGATAAACATTGCTTTGAAAAAAGAACAACAGTATTGCCCAAAAGTTG
AAGTGTTTTGTTTTAAACCACATACTGAAAAGGGATGTTTGATTTGCCAC
CATAAGAAATCATCTGTAGCTGCTATATGTAGGAATAGAGTGCTGAAGCA
GGTTAACCAGTACTCTGAGTCAAGTTACTGTGTAAATGGTGATAAAACAA
GCCTTTTTGAACCTGCTGAACAACATGTTGATAGTAAAGATGCATTTTCA
CCCATCACAGTTAAAGATTTTGCTGAGCAATTGGGCTTTGCTTTGGTTAC
GTCTGATGATAATACACGTGTCATGTATGCAATATTTGTTAGGCGAGATT
CACCCTATTTGCAAATTCGTAGTCTTTTAACAGTCACTGTGACTAATGAC
TGTTGCTGGAAAGTTCACATCGATGACAAAGATGTAACTTCAGAAGAGAT
TTTCAGTAGTTTTAATGAAGTCCTAGATGAAGATAGCTGTAAATCAATCC
TCTCTTTATGTACTGAGGCAGTATTCTGTTCTGGAAACGAAGATTTTGCT
GATTTGTGTGAGAGCAGAAGGGAAGAAGGGAACAAAGTTATGTTTAAAGA
TAGACAGGACACAATAATTGCACGTGAATGTCAAGATGTCATTTGTATGG
CATTGGGGTTAGAATCAACAATTAGACACAATTCTTGCAAAATGCTAATT
GCACCTTCGAAAAACCAATCACGATGTGACATTTGTACCCAATATCGTTT
GACACTGGCTGCTTTAAAATCAAAAAACAAAAAAGGAAACGTCCCTTTTG
CTAAAAGAGACTTTGAAGTACCTGCTTCTTCTTCAGTTCCTCATAAGTTT
ATGAACAATAAACAAATGCAAAGTAAGCTTACTAACAGAAAAATTGAAAA
TCATGCGTTGAAAAAGGAAAACAAACAATTAAGAGAGAGAATAAAAAATC
TCATCGAAAATGAAGGAGTTGGTACTGGTGACGACATGCACAATGCCTTA
AATGAAATACTAAATGAAAAGAAAGCCTCGAGAGCAAAAGACTTTCAATT
TCCTGAAGGATCTGCAATGGAAATATTATTTGAAGAACAAATGAAAACTT
CTAAATTGTCAAGTGCCAAACAAATGCGATGGCACCCACTTGTTATAAGA
TGGTGTCTTGGCATTTACCACACTTCACCAGCTGCATATGAGTTTATCAA
AAAGTCTTCTTTTTTAAAGTTACCTCATAAAACAACCCTGTTAGACTACA
CGCTATACACCACACCTGGCTCTGGTTTTAATGCAGATGTTCTACAGCGC
TTGTACGATGAAGCAAATGTTGAAAATTTACAACTACACCAAAAAAACAT
TTCATTACTATTTGATGAAATGAAAATAAAGGCTGATCTTGTCTACAACA
AGACAACGGGTAAATTGATTGGTTTTGTTGACCTTGACAAAATAACAAAT
GAAATTGAAAAGTTAGAAAGAGTCTGCTCCAAAGATGTTTCACAAGATAA
GGAAATTGCGACCCACGTCATGGCTGTAATGGTTTGTGGAATCTACACAA
ACTTTCAGTTCACCATTGCATATTTCCCAACTAAAGCAATAACCTGTGAT
GTGATATTCTAGTAGGGGGAAATTTGTAAAATCGCTCGATTTTTTTAGTC
AAAGCACTTGTTATACATTTTAGGAAAGCTAAGGGGTAGGGGAATCAAAA
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AAGCAATAACCTGTGATGTGATATTCCCTATTGCTTGGAATGCAGTTTGT
TCAGTAGAGTCGATTGGTCTACTTGTCAGGTGCTTCATATCTGATGGTGC
ATCATCTAATAGGAAGTTCTATAAGTTACATTTGAAACCTGGTTCCAAAG
AGCTTCCTTACTTTGCAATCAACCTGTGCAATAAGTCAAGAAAAATTTAC
CTAATCTGCGATGTGCCCCATTTGATAAAAACAGTTAGAAACAATTGGGA
AAATTCTCATGGCAACAGGAATTCTAGAAATTTGATTGTAAGTGTTTATG
ACATAAAAGTATCAAAATTTTATACCTTGCTGAAAAAGTCCTAAGATTTC
ATTATATTTGAAAATAGGCTTTGAGAGTCAAAAATTGCATTAATTAACAT
TTAATTCAAGTCTTACAGTACAGAATTTGTTATTATGTTCGTCATTACAG
ATTAAGATTATTACTACCTTTCAGTTCAACAGTTACTCGATTAGCTGGGG
TCATCTTGTCTCACTAAAGAATTATGATTCAAATCCAACAACTCCTGGTC
TATACATGACAAAGCTTAGAAAAGAACATGTAAAGCTGACACCTTCTTCA
AGAATGAAAGTTAGGCTTGCTGCACAGGTTAGTTTGAATAGTTCACAAGA
TTTTTATTTGAAATGTTGTGCAATTGAAAATTTAGACCAACTGCCCATAT
GCTATACCAAACTAAGCATAGTCATATTTTCTCAATAGTAATTTTGATTA
TTTTAATTCTTTTAAATCAACATTAACTGCAACTGGTTATTTCTGTTTCA
GGTTCTCAGTACAACTGTTGCAAACTGTTTGAAGTATAGAAACAATCCAG
AAACAAAGGGTACAGAAGAATTCTGTCGAAACTTCGATTATTTTTTCGAC
TGCCTCAATGGGCAATATGAAAGGCAAGGCATTGTTACAAAGAAGCCAGC
ACTAAACCCATACAAATCAGTCAACGATCCTCGTTTTGATGTGAGTGAAA
TTTTAGATAGTCACAATTGACATTTTCAGATTAAAGTACTTTTCTTCACA
TAGGATGTTCGGATTTTGGAGTTAAAATGTTCAAGAAATTTTAGTTTTTC
TGTTATTTATTAACATTCTATAAACTTTTTTCTACCTAGTGGCTAGAGAA
GGACTTCATTAAAGATTACATTATACAATGGCAAGAAGAAGCAAAATCAC
AAATACACTTGACAAAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCC
ACATTTGAAGGATTGCAGATCACAGGTTAAATTTCCTTGACCAAGTTTTT
GGTATCATATGATTATTTTTCTTCAGTTTTTTTCTACCGTGGTATAATAT
CAATAATCAAAATTCTTTTTTCATGATATTTCAAGAAAAATGTTTTCAAC
AGCTGAGTACAAAAGGTAAAAAAATTCAATGTTTTAAAATTTTGACGAGT
TATAGAGATTATTGAATTGTTTATAATTGTTTAATTTTTGTTCATTCTAC
AAATATTTAGTCAAGTCAACAGTGCGACTAATCAAAGATCTTCTTTTGGA
ATACCCTGGCTTTTATGTATTAAGTGGCAAATTTTCTCAGGATCCCCTTG
AACAGCACTTTTCAGCACAACGAAGGAAGTGTGGTTTCAATACAAATCCA
ACAGAGGACCAATATGCTCACAGTGAACTTGGTTTGCACAGTGCAAAATC
TAAGAATGTTGCAAGTTTGAATGGAAACTGTACCATACCTAAGGAAAATC
AACAACAGTTCATGGAAGATGTCGGCATACCCTTGAAGCGTCGAAAGCGC
AAATAAAGGTCTTTCTGTTCTTTTTTTAGTTTTTAACTTAGAGATTTTTG
CAGGGATCTAGGTTCAAAATCTCAAATTACCATTTTATTAGGTGTTTTGA
AAATCAGAATCATACAATACAACTTTTTTAAACTATTCTTACACCATTCA
CTTATACAACTATTCTTACACTATTCACTATACAACTTTTTTTATACTAT
TCTTACACTATTCACGCTTTTTACAACAACACAACACTGTTTTGTTTCAT
TTTCA

Coding sequence (CDS) from alignment at sc0000101:481464..489118-

>TCONS_00010025 ID=TCONS_00010025|Name=TCONS_00010025|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0000101:481464..489118- (Clytia hemisphaerica)
TCAAGTCAACAGTGCGACTAATCAAAGATCTTCTTTTGGAATACCCTGGC
TTTTATGTATTAAGTGGCAAATTTTCTCAGGATCCCCTTGAACAGCACTT
TTCAGCACAACGAAGGAAGTGTGGTTTCAATACAAATCCAACAGAGGACC
AATATGCTCACAGTGAACTTGGTTTGCACAGTGCAAAATCTAAGAATGTT
GCAAGTTTGAATGGAAACTGTACCATACCTAAGGAAAATCAACAACAGTT
CATGGAAGATGTCGGCATACCCTTGAAGCGTCGAAAGCGCAAATAATGGC
TAGAGAAGGACTTCATTAAAGATTACATTATACAATGGCAAGAAGAAGCA
AAATCACAAATACACTTGACAAAGAAGGAGAGAAACAAGCTATGTTTGAG
CCAACCCACATTTGAAGGATTGCAGATCACAGGTTCTCAGTACAACTGTT
GCAAACTGTTTGAAGTATAGAAACAATCCAGAAACAAAGGGTACAGAAGA
ATTCTGTCGAAACTTCGATTATTTTTTCGACTGCCTCAATGGGCAATATG
AAAGGCAAGGCATTGTTACAAAGAAGCCAGCACTAAACCCATACAAATCA
GTCAACGATCCTCGTTTTGATATGACAAAGCTTAGAAAAGAACATGTAAA
GCTGACACCTTCTTCAAGAATGAAAGTTAGGCTTGCTGCACAGTCAAGTC
AACAGTGCGACTAATCAAAGATCTTCTTTTGGAATACCCTGGCTTTTATG
TATTAAGTGGCAAATTTTCTCAGGATCCCCTTGAACAGCACTTTTCAGCA
CAACGAAGGAAGTGTGGTTTCAATACAAATCCAACAGAGGACCAATATGC
TCACAGTGAACTTGGTTTGCACAGTGCAAAATCTAAGAATGTTGCAAGTT
TGAATGGAAACTGTACCATACCTAAGGAAAATCAACAACAGTTCATGGAA
GATGTCGGCATACCCTTGAAGCGTCGAAAGCGCAAATAATGGCTAGAGAA
GGACTTCATTAAAGATTACATTATACAATGGCAAGAAGAAGCAAAATCAC
AAATACACTTGACAAAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCC
ACATTTGAAGGATTGCAGATCACAGGTTCTCAGTACAACTGTTGCAAACT
GTTTGAAGTATAGAAACAATCCAGAAACAAAGGGTACAGAAGAATTCTGT
CGAAACTTCGATTATTTTTTCGACTGCCTCAATGGGCAATATGAAAGGCA
AGGCATTGTTACAAAGAAGCCAGCACTAAACCCATACAAATCAGTCAACG
ATCCTCGTTTTGATATGACAAAGCTTAGAAAAGAACATGTAAAGCTGACA
CCTTCTTCAAGAATGAAAGTTAGGCTTGCTGCACAGTCAAGTCAACAGTG
CGACTAATCAAAGATCTTCTTTTGGAATACCCTGGCTTTTATGTATTAAG
TGGCAAATTTTCTCAGGATCCCCTTGAACAGCACTTTTCAGCACAACGAA
GGAAGTGTGGTTTCAATACAAATCCAACAGAGGACCAATATGCTCACAGT
GAACTTGGTTTGCACAGTGCAAAATCTAAGAATGTTGCAAGTTTGAATGG
AAACTGTACCATACCTAAGGAAAATCAACAACAGTTCATGGAAGATGTCG
GCATACCCTTGAAGCGTCGAAAGCGCAAATAATGGCTAGAGAAGGACTTC
ATTAAAGATTACATTATACAATGGCAAGAAGAAGCAAAATCACAAATACA
CTTGACAAAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTG
AAGGATTGCAGATCACAGGTTCTCAGTACAACTGTTGCAAACTGTTTGAA
GTATAGAAACAATCCAGAAACAAAGGGTACAGAAGAATTCTGTCGAAACT
TCGATTATTTTTTCGACTGCCTCAATGGGCAATATGAAAGGCAAGGCATT
GTTACAAAGAAGCCAGCACTAAACCCATACAAATCAGTCAACGATCCTCG
TTTTGATATGACAAAGCTTAGAAAAGAACATGTAAAGCTGACACCTTCTT
CAAGAATGAAAGTTAGGCTTGCTGCACAGTCAAGTCAACAGTGCGACTAA
TCAAAGATCTTCTTTTGGAATACCCTGGCTTTTATGTATTAAGTGGCAAA
TTTTCTCAGGATCCCCTTGAACAGCACTTTTCAGCACAACGAAGGAAGTG
TGGTTTCAATACAAATCCAACAGAGGACCAATATGCTCACAGTGAACTTG
GTTTGCACAGTGCAAAATCTAAGAATGTTGCAAGTTTGAATGGAAACTGT
ACCATACCTAAGGAAAATCAACAACAGTTCATGGAAGATGTCGGCATACC
CTTGAAGCGTCGAAAGCGCAAATAATGGCTAGAGAAGGACTTCATTAAAG
ATTACATTATACAATGGCAAGAAGAAGCAAAATCACAAATACACTTGACA
AAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTGAAGGATT
GCAGATCACAGGTTCTCAGTACAACTGTTGCAAACTGTTTGAAGTATAGA
AACAATCCAGAAACAAAGGGTACAGAAGAATTCTGTCGAAACTTCGATTA
TTTTTTCGACTGCCTCAATGGGCAATATGAAAGGCAAGGCATTGTTACAA
AGAAGCCAGCACTAAACCCATACAAATCAGTCAACGATCCTCGTTTTGAT
ATGACAAAGCTTAGAAAAGAACATGTAAAGCTGACACCTTCTTCAAGAAT
GAAAGTTAGGCTTGCTGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005620XLOC_005620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010025-exon-sc0000101-1575043694:488980..489118TCONS_00010025-exon-sc0000101-1575043694:488980..489118Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1575043694:482892..483044TCONS_00010025-exon-sc0000101-1575043694:482892..483044Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1575043694:482529..482717TCONS_00010025-exon-sc0000101-1575043694:482529..482717Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1575043694:482244..482379TCONS_00010025-exon-sc0000101-1575043694:482244..482379Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1575043694:481464..482008TCONS_00010025-exon-sc0000101-1575043694:481464..482008Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1510915933:488980..489118TCONS_00010025-exon-sc0000101-1510915933:488980..489118Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1510915933:482892..483044TCONS_00010025-exon-sc0000101-1510915933:482892..483044Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1510915933:482529..482717TCONS_00010025-exon-sc0000101-1510915933:482529..482717Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1510915933:482244..482379TCONS_00010025-exon-sc0000101-1510915933:482244..482379Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1510915933:481464..482008TCONS_00010025-exon-sc0000101-1510915933:481464..482008Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1491911889:488980..489118TCONS_00010025-exon-sc0000101-1491911889:488980..489118Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1491911889:482892..483044TCONS_00010025-exon-sc0000101-1491911889:482892..483044Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1491911889:482529..482717TCONS_00010025-exon-sc0000101-1491911889:482529..482717Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1491911889:482244..482379TCONS_00010025-exon-sc0000101-1491911889:482244..482379Clytia hemisphaericaexon
TCONS_00010025-exon-sc0000101-1491911889:481464..482008TCONS_00010025-exon-sc0000101-1491911889:481464..482008Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010025-proteinTCONS_00010025-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:481464..489118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.29164	4.48218	7.23479	5.91772	0.646174	0.286889	0.519881	0.905863	1.39104	0.20602	0.829581	0.801917	0.913646	1.25304	0.570596	0.705285	0.104705	0.96738	0.298777	0.740128	0.168227	0	0.83579	0.332165	0.658503	0.441299	0.12744	0.45673	0.637555	0.355594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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